Wall clock time and date at job start Tue Mar 31 2020 13:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99641 * 2 1 4 4 C 1.38811 * 120.01628 * 90.00235 * 3 2 1 5 5 C 1.50697 * 119.95926 * 359.97438 * 4 3 2 6 6 C 1.38184 * 120.08842 * 180.02562 * 4 3 2 7 7 C 1.38153 * 120.12806 * 359.97438 * 6 4 3 8 8 C 1.38927 * 120.03797 * 0.02562 * 7 6 4 9 9 N 1.39794 * 120.04689 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00071 * 328.83411 * 9 8 7 11 11 O 1.21630 * 120.00328 * 5.23251 * 10 9 8 12 12 C 1.47385 * 120.00123 * 185.22744 * 10 9 8 13 13 C 1.39246 * 120.28624 * 353.96989 * 12 10 9 14 14 C 1.38211 * 120.09211 * 180.29888 * 13 12 10 15 15 C 1.38837 * 120.67674 * 359.71181 * 14 13 12 16 16 C 1.37590 * 120.57982 * 0.02562 * 15 14 13 17 17 C 1.40719 * 119.87817 * 0.02562 * 16 15 14 18 18 C 1.40876 * 120.32655 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99697 * 145.10275 * 18 17 16 20 20 C 1.40275 * 119.99907 * 325.09946 * 18 17 16 21 21 N 1.30624 * 120.00337 * 340.34421 * 20 18 17 22 22 Si 1.86807 * 119.99704 * 160.33755 * 20 18 17 23 23 H 1.48503 * 109.47086 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.47291 * 300.00390 * 22 20 18 25 25 H 1.48502 * 109.46574 * 60.00429 * 22 20 18 26 26 C 1.38574 * 120.01539 * 270.26769 * 3 2 1 27 27 C 1.50699 * 120.06732 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47415 * 300.00301 * 1 2 3 30 30 H 1.08999 * 109.47087 * 60.00132 * 1 2 3 31 31 H 1.09005 * 109.47173 * 270.02403 * 5 4 3 32 32 H 1.09002 * 109.47068 * 30.02354 * 5 4 3 33 33 H 1.08999 * 109.47594 * 150.02118 * 5 4 3 34 34 H 1.08002 * 119.93381 * 179.97438 * 6 4 3 35 35 H 1.08000 * 119.98207 * 179.97438 * 7 6 4 36 36 H 0.97002 * 120.00353 * 148.83748 * 9 8 7 37 37 H 1.08005 * 119.95729 * 0.02562 * 13 12 10 38 38 H 1.07995 * 119.66331 * 179.73483 * 14 13 12 39 39 H 1.08001 * 119.71278 * 180.02562 * 15 14 13 40 40 H 1.07994 * 120.06380 * 180.02562 * 16 15 14 41 41 H 0.97000 * 119.99794 * 353.67786 * 21 20 18 42 42 H 1.08998 * 109.46861 * 270.27217 * 27 26 3 43 43 H 1.08999 * 109.46883 * 30.27764 * 27 26 3 44 44 H 1.09002 * 109.47042 * 150.27475 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3611 1.8296 1.2019 5 6 2.0184 1.1580 2.5067 6 6 2.9879 3.0612 1.2037 7 6 3.3033 3.6804 0.0097 8 6 2.9902 3.0659 -1.1964 9 7 3.3088 3.6926 -2.4047 10 6 3.3158 5.0380 -2.4847 11 8 3.1387 5.7077 -1.4850 12 6 3.5380 5.6978 -3.7838 13 6 3.8653 4.9436 -4.9076 14 6 4.0789 5.5671 -6.1225 15 6 3.9651 6.9457 -6.2408 16 6 3.6377 7.7172 -5.1496 17 6 3.4161 7.1074 -3.9009 18 6 3.0810 7.8883 -2.7774 19 1 2.4002 7.5007 -2.0341 20 6 3.6317 9.1693 -2.6241 21 7 4.7156 9.4965 -3.2755 22 14 2.8148 10.4073 -1.4884 23 1 3.5869 11.6758 -1.5017 24 1 1.4285 10.6660 -1.9534 25 1 2.7804 9.8639 -0.1068 26 6 2.3555 1.8311 -1.1999 27 6 2.0094 1.1639 -2.5061 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.0200 1.4626 2.8209 32 1 2.0439 0.0761 2.3761 33 1 2.7432 1.4494 3.2668 34 1 3.2317 3.5405 2.1403 35 1 3.7928 4.6431 0.0138 36 1 3.5249 3.1592 -3.1855 37 1 3.9568 3.8703 -4.8289 38 1 4.3366 4.9758 -6.9886 39 1 4.1349 7.4167 -7.1977 40 1 3.5510 8.7889 -5.2512 41 1 5.1911 8.8278 -3.7927 42 1 2.8399 0.5332 -2.8231 43 1 1.1171 0.5517 -2.3760 44 1 1.8210 1.9245 -3.2638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625458637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:07 Heat of formation + Delta-G solvation = -50.521422 kcal Electronic energy + Delta-G solvation = -27169.492886 eV Core-core repulsion = 23436.779209 eV Total energy + Delta-G solvation = -3732.713677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85210 -40.66036 -39.15619 -37.97144 -36.24107 -35.67540 -33.57246 -32.33780 -31.53345 -31.13648 -28.95109 -27.66255 -27.07631 -26.65798 -24.45591 -23.24836 -22.81898 -21.80733 -21.13591 -20.09990 -19.01810 -18.47972 -17.23963 -16.79712 -16.63540 -16.53401 -16.35276 -16.07472 -15.72394 -15.59195 -15.34203 -14.72451 -14.61567 -14.41344 -14.38945 -14.08704 -14.02568 -13.83539 -13.64731 -13.05293 -12.97424 -12.89320 -12.77071 -12.69569 -12.56783 -12.49162 -12.11080 -12.00814 -11.94028 -11.48805 -11.15147 -10.98621 -10.94963 -10.36194 -9.70882 -9.57593 -9.52614 -9.17981 -8.87237 -6.50421 0.08377 0.20762 0.46896 0.87278 1.45499 1.59830 1.75046 2.08873 2.09474 2.28450 2.52033 2.70823 2.99628 3.50613 3.76636 3.91557 3.99870 4.11812 4.16807 4.32021 4.38733 4.41535 4.49229 4.52457 4.55114 4.63999 4.69142 4.73988 4.77201 4.81687 4.83639 4.86283 5.07066 5.09813 5.16588 5.33371 5.34787 5.39141 5.49140 5.55671 5.60284 5.66420 5.80438 5.89654 5.94376 6.14253 6.28478 6.50744 6.57794 6.76785 6.83991 7.40527 8.00842 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.003736 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.935388 B = 7492.430397 C = 8993.718465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C 0.103 3.897 4 C -0.127 4.127 5 C -0.102 4.102 6 C -0.097 4.097 7 C -0.152 4.152 8 C 0.148 3.852 9 N -0.666 5.666 10 C 0.557 3.443 11 O -0.550 6.550 12 C -0.285 4.285 13 C -0.042 4.042 14 C -0.241 4.241 15 C -0.070 4.070 16 C -0.222 4.222 17 C 0.100 3.900 18 C -0.506 4.506 19 H 0.079 0.921 20 C 0.001 3.999 21 N -0.813 5.813 22 Si 1.112 2.888 23 H -0.264 1.264 24 H -0.259 1.259 25 H -0.272 1.272 26 C -0.139 4.139 27 C -0.106 4.106 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.416 0.584 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.283 0.717 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 -16.672 4.130 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.254 6.254 3 C 0.059 3.941 4 C -0.128 4.128 5 C -0.158 4.158 6 C -0.116 4.116 7 C -0.172 4.172 8 C 0.053 3.947 9 N -0.312 5.312 10 C 0.353 3.647 11 O -0.429 6.429 12 C -0.289 4.289 13 C -0.061 4.061 14 C -0.259 4.259 15 C -0.088 4.088 16 C -0.241 4.241 17 C 0.096 3.904 18 C -0.534 4.534 19 H 0.097 0.903 20 C -0.215 4.215 21 N -0.437 5.437 22 Si 0.930 3.070 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.197 1.197 26 C -0.142 4.142 27 C -0.162 4.162 28 H 0.138 0.862 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.254 0.746 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.855 -14.758 5.255 16.724 hybrid contribution 0.194 -1.154 -1.082 1.593 sum -5.661 -15.912 4.173 17.397 Atomic orbital electron populations 1.23208 0.77599 1.04769 1.01030 1.85960 1.21160 1.23947 1.94338 1.18071 0.98456 0.86700 0.90901 1.20408 1.01349 0.94826 0.96252 1.20669 1.02342 1.00637 0.92154 1.21003 0.98476 0.94395 0.97703 1.21495 1.02409 1.01220 0.92122 1.17643 0.98023 0.93015 0.86049 1.43363 1.69520 1.06411 1.11936 1.18580 0.75623 0.81112 0.89427 1.90654 1.49705 1.64178 1.38389 1.19631 1.21624 0.94748 0.92946 1.21143 0.94363 0.98650 0.91915 1.20819 1.12965 0.94203 0.97959 1.21188 0.95540 0.94655 0.97451 1.21228 1.11070 0.98654 0.93181 1.17839 0.87819 0.91476 0.93270 1.21043 1.24506 1.00984 1.06877 0.90324 1.28403 0.94791 0.99951 0.98334 1.70488 1.12719 1.38884 1.21569 0.83062 0.76237 0.73468 0.74243 1.18812 1.18374 1.19665 1.20086 1.01961 0.94749 0.97399 1.20659 1.03161 1.00227 0.92191 0.86209 0.93117 0.93666 0.90553 0.90651 0.90360 0.83905 0.86392 0.74554 0.84920 0.84382 0.85567 0.89100 0.90466 0.89589 0.90041 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.76 113.37 1.22 1.66 16 2 O -0.34 -7.65 8.68 -92.45 -0.80 -8.45 16 3 C 0.10 2.79 5.66 22.49 0.13 2.92 16 4 C -0.13 -3.35 5.90 -19.74 -0.12 -3.46 16 5 C -0.10 -1.90 9.79 71.23 0.70 -1.21 16 6 C -0.10 -2.93 9.69 22.24 0.22 -2.71 16 7 C -0.15 -5.69 8.73 22.41 0.20 -5.49 16 8 C 0.15 5.24 6.35 38.18 0.24 5.48 16 9 N -0.67 -24.32 4.78 -306.52 -1.46 -25.78 16 10 C 0.56 26.02 7.58 86.65 0.66 26.68 16 11 O -0.55 -29.58 10.79 -4.13 -0.04 -29.62 16 12 C -0.28 -13.57 5.92 -19.70 -0.12 -13.68 16 13 C -0.04 -1.62 9.53 22.51 0.21 -1.40 16 14 C -0.24 -8.84 10.03 22.41 0.22 -8.62 16 15 C -0.07 -2.86 10.01 22.26 0.22 -2.63 16 16 C -0.22 -10.99 7.92 22.72 0.18 -10.81 16 17 C 0.10 5.37 5.14 -21.10 -0.11 5.26 16 18 C -0.51 -28.79 7.58 23.41 0.18 -28.61 16 19 H 0.08 4.73 6.05 -2.91 -0.02 4.72 16 20 C 0.00 0.06 5.03 85.37 0.43 0.49 16 21 N -0.81 -44.87 12.57 21.88 0.28 -44.59 16 22 Si 1.11 46.58 29.98 68.60 2.06 48.64 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 C -0.14 -4.05 5.91 -19.64 -0.12 -4.16 16 27 C -0.11 -2.39 9.23 71.24 0.66 -1.73 16 28 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.74 7.23 -2.39 -0.02 0.72 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 1.33 7.53 -2.39 -0.02 1.32 16 33 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 34 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.12 5.21 5.89 -2.91 -0.02 5.20 16 36 H 0.42 12.33 5.75 -92.71 -0.53 11.79 16 37 H 0.13 3.89 6.42 -2.91 -0.02 3.88 16 38 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.09 4.71 7.02 -2.91 -0.02 4.69 16 41 H 0.28 16.09 6.68 -92.71 -0.62 15.47 16 42 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.61 6.30 -2.39 -0.02 1.59 16 44 H 0.06 1.46 7.11 -2.39 -0.02 1.44 16 Total: -1.00 -68.45 359.67 5.68 -62.76 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: 0.66 Total: 39.09 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 5.00 Total: -42.04 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.19 Total: -70.38 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.85 Total: -38.08 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.06 Total: 48.64 kcal Total: -68.45 5.68 -62.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625458637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.240 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds