Wall clock time and date at job start Tue Mar 31 2020 13:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38211 * 119.95377 * 2 1 4 4 C 1.38125 * 120.12100 * 180.02562 * 3 2 1 5 5 C 1.38925 * 120.04207 * 0.04038 * 4 3 2 6 6 N 1.39925 * 120.04464 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99694 * 325.97081 * 6 5 4 8 8 O 1.21280 * 119.99900 * 4.81862 * 7 6 5 9 9 C 1.50702 * 119.99783 * 184.82085 * 7 6 5 10 10 H 1.08998 * 109.46865 * 299.99873 * 9 7 6 11 11 C 1.50701 * 109.46942 * 59.99593 * 9 7 6 12 12 H 1.08000 * 119.99990 * 234.51261 * 11 9 7 13 13 C 1.37879 * 119.99950 * 54.51432 * 11 9 7 14 14 N 1.31515 * 119.99929 * 1.98703 * 13 11 9 15 15 Si 1.86805 * 120.00020 * 181.98460 * 13 11 9 16 16 H 1.48503 * 109.46929 * 90.00277 * 15 13 11 17 17 H 1.48497 * 109.47087 * 209.99801 * 15 13 11 18 18 H 1.48493 * 109.46926 * 330.00306 * 15 13 11 19 19 C 1.50698 * 109.47215 * 179.97438 * 9 7 6 20 20 C 1.38226 * 120.00530 * 228.21614 * 19 9 7 21 21 C 1.38227 * 120.00441 * 179.78943 * 20 19 9 22 22 C 1.38240 * 119.99618 * 0.44164 * 21 20 19 23 23 C 1.38226 * 120.00177 * 359.80729 * 22 21 20 24 24 C 1.38239 * 119.99422 * 48.48571 * 19 9 7 25 25 C 1.38761 * 119.91737 * 0.23290 * 5 4 3 26 26 C 1.50694 * 120.06415 * 179.74481 * 25 5 4 27 27 C 1.38627 * 119.87157 * 359.47232 * 25 5 4 28 28 O 1.35893 * 120.01842 * 180.25230 * 27 25 5 29 29 H 1.09003 * 109.47424 * 90.00194 * 1 2 3 30 30 H 1.09000 * 109.46730 * 209.99987 * 1 2 3 31 31 H 1.09001 * 109.47229 * 329.99792 * 1 2 3 32 32 H 1.07996 * 119.94074 * 0.02562 * 3 2 1 33 33 H 1.08009 * 119.97941 * 180.02562 * 4 3 2 34 34 H 0.96996 * 119.99994 * 145.96026 * 6 5 4 35 35 H 0.97002 * 119.99760 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99731 * 359.97438 * 20 19 9 37 37 H 1.08002 * 120.00646 * 180.26915 * 21 20 19 38 38 H 1.08009 * 119.99657 * 179.83510 * 22 21 20 39 39 H 1.07996 * 120.00446 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.00295 * 359.97438 * 24 19 9 41 41 H 1.09002 * 109.46973 * 90.00379 * 26 25 5 42 42 H 1.09000 * 109.47637 * 209.99955 * 26 25 5 43 43 H 1.08996 * 109.47488 * 330.00572 * 26 25 5 44 44 H 0.96710 * 113.99676 * 270.29571 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1975 0.0000 4 6 3.5783 1.2015 -0.0005 5 6 4.2773 0.0009 -0.0019 6 7 5.6766 0.0050 -0.0030 7 6 6.3472 0.9747 -0.6561 8 8 5.7409 1.8916 -1.1685 9 6 7.8503 0.9197 -0.7495 10 1 8.2773 0.9336 0.2533 11 6 8.2637 -0.3468 -1.4539 12 1 8.9619 -1.0232 -0.9834 13 6 7.7506 -0.6419 -2.6992 14 7 6.9309 0.2005 -3.2892 15 14 8.2200 -2.2382 -3.5485 16 1 7.2538 -3.3014 -3.1725 17 1 8.1926 -2.0425 -5.0202 18 1 9.5863 -2.6395 -3.1276 19 6 8.3494 2.1114 -1.5252 20 6 9.2645 1.9374 -2.5465 21 6 9.7190 3.0300 -3.2609 22 6 9.2652 4.2978 -2.9479 23 6 8.3540 4.4723 -1.9233 24 6 7.8962 3.3792 -1.2117 25 6 3.5862 -1.2023 -0.0077 26 6 4.3411 -2.5065 -0.0150 27 6 2.2000 -1.2023 -0.0009 28 8 1.5201 -2.3789 -0.0013 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6554 2.1318 0.0004 33 1 4.1153 2.1387 -0.0001 34 1 6.1639 -0.6900 0.4663 35 1 6.5703 -0.0070 -4.1655 36 1 9.6221 0.9474 -2.7882 37 1 10.4307 2.8936 -4.0617 38 1 9.6223 5.1518 -3.5044 39 1 7.9991 5.4627 -1.6791 40 1 7.1841 3.5155 -0.4112 41 1 4.5238 -2.8263 1.0109 42 1 3.7526 -3.2642 -0.5323 43 1 5.2930 -2.3725 -0.5287 44 1 1.3230 -2.7190 -0.8850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631311378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:24 Heat of formation + Delta-G solvation = -32.891908 kcal Electronic energy + Delta-G solvation = -27880.501856 eV Core-core repulsion = 24148.552652 eV Total energy + Delta-G solvation = -3731.949204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16172 -38.95009 -37.71986 -36.18305 -34.32415 -33.74592 -31.82045 -30.96425 -30.39119 -29.73473 -27.55841 -26.66467 -25.63876 -23.92444 -22.08114 -21.35073 -20.95128 -20.14703 -19.42208 -17.93227 -17.19235 -16.44364 -15.75331 -15.51511 -15.13121 -14.92395 -14.61022 -14.51109 -14.01447 -13.67974 -13.52725 -13.30397 -12.98582 -12.88972 -12.66158 -12.45411 -12.30828 -12.23430 -12.12234 -11.73753 -11.71868 -11.39335 -11.25173 -11.04104 -10.99359 -10.83381 -10.51529 -10.25245 -10.11010 -9.79308 -9.50114 -9.31547 -8.79570 -8.47472 -8.11984 -7.75520 -7.48639 -7.31003 -6.23061 -4.40073 1.66253 1.69539 2.47896 2.55574 3.13407 3.24069 3.24443 3.79223 3.86372 4.19052 4.36810 4.58592 4.95687 5.04428 5.09021 5.19050 5.41403 5.56621 5.72486 5.78411 5.81228 5.86267 5.92154 5.95052 6.00087 6.02136 6.13127 6.19141 6.31869 6.42059 6.49981 6.60565 6.67788 6.70582 6.79651 6.87305 6.90464 7.02481 7.06316 7.15586 7.48475 7.55736 7.59733 7.61124 7.70551 7.89304 8.08512 8.19840 8.37572 8.65521 9.27195 9.42528 10.77286 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.004702 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.021071 B = 5953.592561 C = 7418.176676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.144 4.144 3 C -0.095 4.095 4 C -0.129 4.129 5 C 0.189 3.811 6 N -0.673 5.673 7 C 0.550 3.450 8 O -0.522 6.522 9 C 0.058 3.942 10 H 0.060 0.940 11 C -0.544 4.544 12 H 0.069 0.931 13 C 0.075 3.925 14 N -0.840 5.840 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.270 1.270 19 C -0.016 4.016 20 C -0.064 4.064 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.102 4.102 25 C -0.144 4.144 26 C -0.106 4.106 27 C 0.113 3.887 28 O -0.495 6.495 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.407 0.593 35 H 0.266 0.734 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 -1.030 5.357 7.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.146 4.146 3 C -0.114 4.114 4 C -0.149 4.149 5 C 0.092 3.908 6 N -0.317 5.317 7 C 0.341 3.659 8 O -0.397 6.397 9 C 0.037 3.963 10 H 0.078 0.922 11 C -0.581 4.581 12 H 0.087 0.913 13 C -0.134 4.134 14 N -0.472 5.472 15 Si 0.713 3.287 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.017 4.017 20 C -0.081 4.081 21 C -0.165 4.165 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.120 4.120 25 C -0.147 4.147 26 C -0.163 4.163 27 C 0.068 3.932 28 O -0.304 6.304 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.242 0.758 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.746 -0.241 5.372 7.870 hybrid contribution 0.191 -1.321 -1.287 1.854 sum -5.556 -1.562 4.084 7.070 Atomic orbital electron populations 1.20562 0.91392 1.02373 1.01571 1.19972 0.96106 0.92537 1.05977 1.20732 0.93761 0.96721 1.00191 1.21349 0.93682 0.98371 1.01534 1.17535 0.84177 0.92382 0.96703 1.43646 1.02971 1.31284 1.53756 1.21356 0.91405 0.79254 0.73880 1.90528 1.70162 1.34590 1.44376 1.17881 0.87742 0.94513 0.96145 0.92166 1.20697 1.29627 1.04937 1.02881 0.91259 1.25060 0.94675 0.96470 0.97165 1.70045 1.28208 1.33864 1.15077 0.86673 0.79225 0.83766 0.79068 1.20418 1.21071 1.19488 1.19766 0.93741 0.92881 0.95318 1.21155 0.95497 0.98171 0.93322 1.21006 1.01688 0.93294 1.00518 1.20790 0.99886 0.96564 0.98903 1.20815 0.99463 0.97840 0.97998 1.20949 0.98331 0.92684 1.00073 1.19937 0.93037 0.95081 1.06689 1.20554 1.00328 0.93543 1.01857 1.17731 0.88557 0.84556 1.02341 1.84760 1.76177 1.36562 1.32943 0.92104 0.91507 0.92066 0.86123 0.84028 0.75802 0.92345 0.85343 0.87982 0.88150 0.88037 0.87605 0.91666 0.91905 0.90761 0.76313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.79 36.01 0.35 -0.86 16 2 C -0.14 -2.21 5.90 -104.44 -0.62 -2.82 16 3 C -0.10 -1.55 9.69 -39.63 -0.38 -1.93 16 4 C -0.13 -2.43 8.70 -39.37 -0.34 -2.77 16 5 C 0.19 3.61 6.30 -83.72 -0.53 3.09 16 6 N -0.67 -13.20 4.64 -9.88 -0.05 -13.25 16 7 C 0.55 12.37 5.26 -10.98 -0.06 12.31 16 8 O -0.52 -13.03 11.40 5.56 0.06 -12.96 16 9 C 0.06 1.30 2.77 -94.07 -0.26 1.04 16 10 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.54 -12.62 7.17 -34.44 -0.25 -12.87 16 12 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.07 1.82 3.98 -17.82 -0.07 1.74 16 14 N -0.84 -22.17 10.88 55.43 0.60 -21.57 16 15 Si 0.89 19.23 29.54 -169.99 -5.02 14.21 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 C -0.02 -0.37 4.53 -104.63 -0.47 -0.84 16 20 C -0.06 -1.44 8.22 -39.59 -0.33 -1.76 16 21 C -0.15 -2.99 10.05 -39.58 -0.40 -3.39 16 22 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 23 C -0.14 -2.83 10.05 -39.59 -0.40 -3.23 16 24 C -0.10 -2.21 8.22 -39.58 -0.33 -2.54 16 25 C -0.14 -2.49 5.91 -104.29 -0.62 -3.11 16 26 C -0.11 -1.64 9.25 36.00 0.33 -1.30 16 27 C 0.11 1.80 6.64 -39.24 -0.26 1.54 16 28 O -0.50 -6.68 11.59 -19.40 -0.22 -6.90 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 31 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.14 2.86 6.13 -52.48 -0.32 2.54 16 34 H 0.41 7.12 7.78 -40.82 -0.32 6.81 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.13 3.00 5.98 -52.49 -0.31 2.69 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.11 2.24 7.12 -52.48 -0.37 1.87 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.88 7.54 -51.93 -0.39 0.49 16 43 H 0.07 1.26 7.16 -51.93 -0.37 0.89 16 44 H 0.38 3.64 9.06 45.56 0.41 4.06 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -29.21 361.00 -9.19 -38.40 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -4.99 Total: 17.49 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -5.02 Total: -20.85 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.56 Total: -34.82 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.16 Total: -19.87 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.21 -9.19 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631311378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.512 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds