Wall clock time and date at job start Tue Mar 31 2020 13:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38211 * 119.95377 * 2 1 4 4 C 1.38125 * 120.12100 * 180.02562 * 3 2 1 5 5 C 1.38925 * 120.04207 * 0.04038 * 4 3 2 6 6 N 1.39925 * 120.04464 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99694 * 325.97081 * 6 5 4 8 8 O 1.21280 * 119.99900 * 4.81862 * 7 6 5 9 9 C 1.50702 * 119.99783 * 184.82085 * 7 6 5 10 10 H 1.08998 * 109.46865 * 299.99873 * 9 7 6 11 11 C 1.50701 * 109.46942 * 59.99593 * 9 7 6 12 12 H 1.08000 * 119.99990 * 234.51261 * 11 9 7 13 13 C 1.37879 * 119.99950 * 54.51432 * 11 9 7 14 14 N 1.31515 * 119.99929 * 1.98703 * 13 11 9 15 15 Si 1.86805 * 120.00020 * 181.98460 * 13 11 9 16 16 H 1.48503 * 109.46929 * 90.00277 * 15 13 11 17 17 H 1.48497 * 109.47087 * 209.99801 * 15 13 11 18 18 H 1.48493 * 109.46926 * 330.00306 * 15 13 11 19 19 C 1.50698 * 109.47215 * 179.97438 * 9 7 6 20 20 C 1.38226 * 120.00530 * 228.21614 * 19 9 7 21 21 C 1.38227 * 120.00441 * 179.78943 * 20 19 9 22 22 C 1.38240 * 119.99618 * 0.44164 * 21 20 19 23 23 C 1.38226 * 120.00177 * 359.80729 * 22 21 20 24 24 C 1.38239 * 119.99422 * 48.48571 * 19 9 7 25 25 C 1.38761 * 119.91737 * 0.23290 * 5 4 3 26 26 C 1.50694 * 120.06415 * 179.74481 * 25 5 4 27 27 C 1.38627 * 119.87157 * 359.47232 * 25 5 4 28 28 O 1.35893 * 120.01842 * 180.25230 * 27 25 5 29 29 H 1.09003 * 109.47424 * 90.00194 * 1 2 3 30 30 H 1.09000 * 109.46730 * 209.99987 * 1 2 3 31 31 H 1.09001 * 109.47229 * 329.99792 * 1 2 3 32 32 H 1.07996 * 119.94074 * 0.02562 * 3 2 1 33 33 H 1.08009 * 119.97941 * 180.02562 * 4 3 2 34 34 H 0.96996 * 119.99994 * 145.96026 * 6 5 4 35 35 H 0.97002 * 119.99760 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99731 * 359.97438 * 20 19 9 37 37 H 1.08002 * 120.00646 * 180.26915 * 21 20 19 38 38 H 1.08009 * 119.99657 * 179.83510 * 22 21 20 39 39 H 1.07996 * 120.00446 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.00295 * 359.97438 * 24 19 9 41 41 H 1.09002 * 109.46973 * 90.00379 * 26 25 5 42 42 H 1.09000 * 109.47637 * 209.99955 * 26 25 5 43 43 H 1.08996 * 109.47488 * 330.00572 * 26 25 5 44 44 H 0.96710 * 113.99676 * 270.29571 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1975 0.0000 4 6 3.5783 1.2015 -0.0005 5 6 4.2773 0.0009 -0.0019 6 7 5.6766 0.0050 -0.0030 7 6 6.3472 0.9747 -0.6561 8 8 5.7409 1.8916 -1.1685 9 6 7.8503 0.9197 -0.7495 10 1 8.2773 0.9336 0.2533 11 6 8.2637 -0.3468 -1.4539 12 1 8.9619 -1.0232 -0.9834 13 6 7.7506 -0.6419 -2.6992 14 7 6.9309 0.2005 -3.2892 15 14 8.2200 -2.2382 -3.5485 16 1 7.2538 -3.3014 -3.1725 17 1 8.1926 -2.0425 -5.0202 18 1 9.5863 -2.6395 -3.1276 19 6 8.3494 2.1114 -1.5252 20 6 9.2645 1.9374 -2.5465 21 6 9.7190 3.0300 -3.2609 22 6 9.2652 4.2978 -2.9479 23 6 8.3540 4.4723 -1.9233 24 6 7.8962 3.3792 -1.2117 25 6 3.5862 -1.2023 -0.0077 26 6 4.3411 -2.5065 -0.0150 27 6 2.2000 -1.2023 -0.0009 28 8 1.5201 -2.3789 -0.0013 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6554 2.1318 0.0004 33 1 4.1153 2.1387 -0.0001 34 1 6.1639 -0.6900 0.4663 35 1 6.5703 -0.0070 -4.1655 36 1 9.6221 0.9474 -2.7882 37 1 10.4307 2.8936 -4.0617 38 1 9.6223 5.1518 -3.5044 39 1 7.9991 5.4627 -1.6791 40 1 7.1841 3.5155 -0.4112 41 1 4.5238 -2.8263 1.0109 42 1 3.7526 -3.2642 -0.5323 43 1 5.2930 -2.3725 -0.5287 44 1 1.3230 -2.7190 -0.8850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631311378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:23 Heat of formation + Delta-G solvation = -48.954983 kcal Electronic energy + Delta-G solvation = -27881.198403 eV Core-core repulsion = 24148.552652 eV Total energy + Delta-G solvation = -3732.645751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58725 -40.45195 -39.24826 -37.49258 -35.72397 -35.52417 -33.21525 -32.68235 -31.63796 -31.36127 -29.19477 -27.88001 -27.01929 -25.64401 -23.47429 -22.97215 -22.40950 -21.51271 -21.02149 -19.24562 -18.86745 -17.96655 -17.16557 -17.05483 -16.80603 -16.51674 -16.04098 -15.85758 -15.50851 -15.33387 -15.10067 -14.59925 -14.25899 -14.16264 -14.04366 -13.97512 -13.88627 -13.72153 -13.56828 -13.06033 -12.97055 -12.84510 -12.74059 -12.60542 -12.50924 -12.39157 -12.15553 -11.78416 -11.47877 -11.41944 -11.18827 -10.81540 -10.65059 -10.18902 -9.45060 -9.37844 -9.12605 -8.72438 -8.10191 -6.29821 0.36434 0.37126 0.86265 0.92352 1.39065 1.44838 1.51322 2.16963 2.39611 2.47829 2.87737 3.18182 3.31432 3.43363 3.88352 4.02078 4.13725 4.30842 4.34974 4.40729 4.47665 4.51666 4.64370 4.68418 4.75954 4.77971 4.83002 4.86495 4.93803 4.97406 5.03611 5.14267 5.16686 5.27162 5.43033 5.43807 5.50619 5.54535 5.63184 5.68101 5.73751 5.88460 5.91876 5.96346 6.16288 6.40426 6.51833 6.70021 6.84819 6.91958 7.39522 7.75417 8.88387 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.004702 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.021071 B = 5953.592561 C = 7418.176676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.141 4.141 3 C -0.098 4.098 4 C -0.150 4.150 5 C 0.159 3.841 6 N -0.667 5.667 7 C 0.551 3.449 8 O -0.553 6.553 9 C 0.049 3.951 10 H 0.072 0.928 11 C -0.535 4.535 12 H 0.074 0.926 13 C 0.043 3.957 14 N -0.871 5.871 15 Si 0.936 3.064 16 H -0.276 1.276 17 H -0.296 1.296 18 H -0.261 1.261 19 C -0.036 4.036 20 C -0.086 4.086 21 C -0.152 4.152 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.118 4.118 25 C -0.154 4.154 26 C -0.101 4.101 27 C 0.115 3.885 28 O -0.492 6.492 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.119 0.881 34 H 0.413 0.587 35 H 0.255 0.745 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 -1.450 5.362 8.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C -0.116 4.116 4 C -0.171 4.171 5 C 0.063 3.937 6 N -0.310 5.310 7 C 0.342 3.658 8 O -0.430 6.430 9 C 0.028 3.972 10 H 0.090 0.910 11 C -0.573 4.573 12 H 0.092 0.908 13 C -0.162 4.162 14 N -0.505 5.505 15 Si 0.762 3.238 16 H -0.202 1.202 17 H -0.223 1.223 18 H -0.185 1.185 19 C -0.037 4.037 20 C -0.104 4.104 21 C -0.170 4.170 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.137 4.137 25 C -0.157 4.157 26 C -0.158 4.158 27 C 0.070 3.930 28 O -0.304 6.304 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.137 0.863 34 H 0.250 0.750 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.760 -0.706 5.402 8.682 hybrid contribution 0.443 -1.190 -1.235 1.771 sum -6.318 -1.896 4.167 7.802 Atomic orbital electron populations 1.20618 0.88549 1.03545 1.02785 1.20380 0.98121 0.91782 1.03948 1.20984 0.92767 0.98350 0.99535 1.21305 0.94994 0.97509 1.03247 1.17747 0.83768 0.93392 0.98785 1.43435 1.03602 1.30696 1.53302 1.21290 0.91421 0.79392 0.73726 1.90498 1.70677 1.35908 1.45952 1.18002 0.88031 0.94418 0.96775 0.90978 1.20885 1.28758 1.05003 1.02631 0.90791 1.25538 0.94561 0.98393 0.97685 1.70214 1.30011 1.35458 1.14812 0.85882 0.79338 0.81134 0.77425 1.20171 1.22252 1.18507 1.19872 0.94386 0.93438 0.95978 1.21139 0.96567 0.98340 0.94365 1.21319 1.01819 0.93249 1.00602 1.21186 0.98926 0.97262 0.98482 1.21186 0.99037 0.98537 0.97540 1.21032 0.98763 0.93135 1.00743 1.20172 0.94020 0.95009 1.06531 1.20540 0.99286 0.93124 1.02835 1.17811 0.88173 0.85686 1.01368 1.84710 1.75545 1.35479 1.34685 0.90705 0.90762 0.90526 0.83936 0.86308 0.75046 0.93558 0.86935 0.85650 0.84479 0.85233 0.88148 0.89993 0.90407 0.92825 0.73948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 9.79 71.24 0.70 -1.32 16 2 C -0.14 -4.03 5.90 -19.74 -0.12 -4.15 16 3 C -0.10 -3.11 9.69 22.24 0.22 -2.89 16 4 C -0.15 -5.82 8.70 22.41 0.20 -5.63 16 5 C 0.16 6.23 6.30 38.14 0.24 6.47 16 6 N -0.67 -27.11 4.64 -303.55 -1.41 -28.51 16 7 C 0.55 25.74 5.26 87.66 0.46 26.20 16 8 O -0.55 -28.89 11.40 -3.03 -0.03 -28.92 16 9 C 0.05 2.25 2.77 -13.03 -0.04 2.22 16 10 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 11 C -0.54 -25.27 7.17 25.60 0.18 -25.09 16 12 H 0.07 3.35 7.81 -2.91 -0.02 3.32 16 13 C 0.04 2.12 3.98 84.65 0.34 2.46 16 14 N -0.87 -47.30 10.88 21.45 0.23 -47.06 16 15 Si 0.94 39.85 29.54 68.60 2.03 41.88 16 16 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.30 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 C -0.04 -1.68 4.53 -19.87 -0.09 -1.77 16 20 C -0.09 -3.95 8.22 22.26 0.18 -3.76 16 21 C -0.15 -6.05 10.05 22.27 0.22 -5.82 16 22 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 23 C -0.15 -5.59 10.05 22.27 0.22 -5.36 16 24 C -0.12 -5.23 8.22 22.27 0.18 -5.05 16 25 C -0.15 -5.26 5.91 -19.65 -0.12 -5.37 16 26 C -0.10 -3.03 9.25 71.23 0.66 -2.37 16 27 C 0.11 3.46 6.64 22.49 0.15 3.61 16 28 O -0.49 -11.84 11.59 -92.34 -1.07 -12.91 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.44 7.53 -2.39 -0.02 1.42 16 31 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.12 5.10 6.13 -2.91 -0.02 5.08 16 34 H 0.41 14.98 7.78 -92.71 -0.72 14.26 16 35 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 36 H 0.11 5.41 5.98 -2.91 -0.02 5.39 16 37 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 39 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 40 H 0.10 4.43 7.12 -2.91 -0.02 4.41 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.08 2.05 7.54 -2.39 -0.02 2.03 16 43 H 0.05 1.82 7.16 -2.39 -0.02 1.80 16 44 H 0.40 6.37 9.06 -74.05 -0.67 5.70 16 Total: -1.00 -63.97 361.00 3.22 -60.75 By element: Atomic # 1 Polarization: 47.67 SS G_CDS: -0.35 Total: 47.33 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 3.82 Total: -32.54 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -1.17 Total: -75.58 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -1.10 Total: -41.83 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -63.97 3.22 -60.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631311378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.794 kcal (2) G-P(sol) polarization free energy of solvation -63.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds