Wall clock time and date at job start Tue Mar 31 2020 13:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38224 * 119.96075 * 2 1 4 4 C 1.38115 * 120.12638 * 180.27554 * 3 2 1 5 5 C 1.38931 * 120.04078 * 359.49012 * 4 3 2 6 6 N 1.39918 * 120.04238 * 180.27508 * 5 4 3 7 7 C 1.34770 * 120.00400 * 325.47152 * 6 5 4 8 8 O 1.21293 * 119.99666 * 4.13330 * 7 6 5 9 9 C 1.50704 * 120.00475 * 184.13424 * 7 6 5 10 10 H 1.09003 * 109.46669 * 60.00223 * 9 7 6 11 11 C 1.50697 * 109.47043 * 299.99951 * 9 7 6 12 12 H 1.08001 * 120.00250 * 334.85457 * 11 9 7 13 13 C 1.37877 * 119.99930 * 154.85571 * 11 9 7 14 14 N 1.31516 * 119.99967 * 5.00316 * 13 11 9 15 15 Si 1.86797 * 119.99959 * 185.00338 * 13 11 9 16 16 H 1.48501 * 109.47313 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47349 * 120.00186 * 15 13 11 18 18 H 1.48505 * 109.47259 * 240.00045 * 15 13 11 19 19 C 1.50702 * 109.47181 * 179.97438 * 9 7 6 20 20 C 1.38234 * 119.99696 * 55.58604 * 19 9 7 21 21 C 1.38241 * 119.99562 * 179.78863 * 20 19 9 22 22 C 1.38235 * 119.99984 * 0.43862 * 21 20 19 23 23 C 1.38234 * 119.99848 * 359.81459 * 22 21 20 24 24 C 1.38231 * 119.99791 * 235.85937 * 19 9 7 25 25 C 1.38753 * 119.91640 * 0.25186 * 5 4 3 26 26 C 1.50698 * 120.06287 * 179.97438 * 25 5 4 27 27 C 1.38637 * 119.87335 * 359.97438 * 25 5 4 28 28 O 1.35900 * 120.01876 * 179.97438 * 27 25 5 29 29 H 1.09006 * 109.47414 * 270.23441 * 1 2 3 30 30 H 1.08998 * 109.47289 * 30.23396 * 1 2 3 31 31 H 1.09000 * 109.47317 * 150.23268 * 1 2 3 32 32 H 1.08007 * 119.93025 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.98011 * 179.76173 * 4 3 2 34 34 H 0.97005 * 119.99676 * 145.46665 * 6 5 4 35 35 H 0.97001 * 119.99759 * 179.97438 * 14 13 11 36 36 H 1.07993 * 120.00385 * 359.97438 * 20 19 9 37 37 H 1.08003 * 119.99662 * 180.27448 * 21 20 19 38 38 H 1.07998 * 119.99791 * 179.83389 * 22 21 20 39 39 H 1.08002 * 119.99806 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00700 * 359.97438 * 24 19 9 41 41 H 1.09002 * 109.46895 * 90.00436 * 26 25 5 42 42 H 1.09002 * 109.47194 * 209.99967 * 26 25 5 43 43 H 1.08994 * 109.47066 * 329.99676 * 26 25 5 44 44 H 0.96696 * 114.00061 * 90.00236 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1975 0.0000 4 6 3.5784 1.2015 -0.0057 5 6 4.2774 0.0009 -0.0008 6 7 5.6766 0.0049 -0.0008 7 6 6.3477 0.9657 -0.6663 8 8 5.7410 1.8689 -1.2022 9 6 7.8520 0.9178 -0.7446 10 1 8.1610 -0.0061 -1.2335 11 6 8.4292 0.9675 0.6466 12 1 7.8660 1.4206 1.4491 13 6 9.6763 0.4347 0.8949 14 7 10.4034 -0.0280 -0.0985 15 14 10.3332 0.3699 2.6424 16 1 9.3295 0.9501 3.5704 17 1 10.5990 -1.0416 3.0194 18 1 11.5938 1.1504 2.7266 19 6 8.3515 2.0972 -1.5387 20 6 8.0036 3.3810 -1.1624 21 6 8.4654 4.4631 -1.8883 22 6 9.2676 4.2608 -2.9958 23 6 9.6110 2.9766 -3.3751 24 6 9.1528 1.8948 -2.6467 25 6 3.5862 -1.2022 0.0046 26 6 4.3411 -2.5065 0.0093 27 6 2.1999 -1.2022 0.0056 28 8 1.5199 -2.3788 0.0103 29 1 -0.3634 0.0042 1.0277 30 1 -0.3634 0.8879 -0.5174 31 1 -0.3634 -0.8921 -0.5102 32 1 1.6554 2.1319 0.0004 33 1 4.1153 2.1386 -0.0096 34 1 6.1635 -0.6838 0.4782 35 1 11.2810 -0.4025 0.0762 36 1 7.3736 3.5388 -0.2995 37 1 8.1973 5.4663 -1.5916 38 1 9.6261 5.1060 -3.5644 39 1 10.2374 2.8186 -4.2406 40 1 9.4213 0.8916 -2.9431 41 1 4.5238 -2.8168 1.0381 42 1 3.7525 -3.2689 -0.5010 43 1 5.2929 -2.3773 -0.5058 44 1 1.3237 -2.7162 0.8950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631311381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:27 Heat of formation + Delta-G solvation = -40.894812 kcal Electronic energy + Delta-G solvation = -27190.638936 eV Core-core repulsion = 23458.342701 eV Total energy + Delta-G solvation = -3732.296236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41306 -39.13850 -37.89109 -36.42135 -34.59644 -33.74696 -32.08235 -31.16509 -30.56669 -29.89915 -27.69633 -26.85011 -25.80151 -23.90336 -22.30288 -21.61028 -21.18197 -20.33826 -19.50046 -18.18261 -17.12079 -16.66167 -16.06248 -15.74910 -15.58258 -14.89353 -14.65204 -14.59170 -14.14607 -13.91979 -13.76518 -13.39713 -13.13901 -13.10224 -12.95021 -12.62247 -12.43816 -12.27209 -11.99196 -11.90966 -11.73827 -11.66516 -11.44426 -11.23978 -11.08527 -11.05893 -10.46439 -10.44162 -10.28399 -10.06355 -9.69667 -9.50473 -8.81562 -8.75480 -8.34506 -7.90392 -7.64814 -7.57095 -6.33655 -4.42697 1.44929 1.45854 2.41280 2.42411 3.13644 3.22734 3.25363 3.38689 3.71272 3.91264 4.22029 4.38263 4.82855 4.89958 5.01070 5.04454 5.21955 5.39893 5.55681 5.60778 5.70458 5.71863 5.74419 5.81197 5.84691 5.90011 5.96785 6.01677 6.16911 6.21830 6.30229 6.49220 6.51116 6.59879 6.64329 6.70479 6.78767 6.83787 6.98193 7.12272 7.28636 7.40342 7.45785 7.56265 7.71347 7.73055 7.90339 7.99556 8.11788 8.60020 8.95192 9.24243 10.73517 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.004063 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.939724 B = 6889.859537 C = 8302.371406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.137 4.137 3 C -0.095 4.095 4 C -0.125 4.125 5 C 0.173 3.827 6 N -0.670 5.670 7 C 0.528 3.472 8 O -0.540 6.540 9 C 0.059 3.941 10 H 0.083 0.917 11 C -0.522 4.522 12 H 0.065 0.935 13 C 0.076 3.924 14 N -0.870 5.870 15 Si 0.898 3.102 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.013 4.013 20 C -0.085 4.085 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.135 4.135 24 C -0.105 4.105 25 C -0.143 4.143 26 C -0.111 4.111 27 C 0.114 3.886 28 O -0.493 6.493 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.417 0.583 35 H 0.267 0.733 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.757 -2.329 1.284 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C -0.114 4.114 4 C -0.145 4.145 5 C 0.077 3.923 6 N -0.314 5.314 7 C 0.319 3.681 8 O -0.417 6.417 9 C 0.038 3.962 10 H 0.101 0.899 11 C -0.560 4.560 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.505 5.505 15 Si 0.725 3.275 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.014 4.014 20 C -0.103 4.103 21 C -0.155 4.155 22 C -0.166 4.166 23 C -0.153 4.153 24 C -0.123 4.123 25 C -0.147 4.147 26 C -0.167 4.167 27 C 0.070 3.930 28 O -0.302 6.302 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -11.866 -1.721 0.210 11.992 hybrid contribution 0.867 -0.369 1.662 1.911 sum -10.998 -2.089 1.872 11.350 Atomic orbital electron populations 1.20590 0.91147 1.02705 1.01673 1.20049 0.96306 0.92497 1.05006 1.20784 0.93671 0.96935 1.00024 1.21389 0.93811 0.98420 1.00875 1.17588 0.83937 0.92659 0.98141 1.43726 1.03234 1.31996 1.52462 1.21904 0.91930 0.79587 0.74654 1.90590 1.70658 1.34282 1.46181 1.18070 0.84773 0.95618 0.97787 0.89921 1.20717 1.03034 1.40770 0.91467 0.91693 1.24957 0.96354 0.94177 0.97522 1.69939 1.11109 1.38589 1.30868 0.86427 0.79154 0.77915 0.83999 1.19483 1.20633 1.20744 1.19903 0.94585 0.94916 0.91990 1.20786 0.98505 0.92185 0.98805 1.20918 0.99774 0.98047 0.96771 1.20792 1.01108 0.96360 0.98351 1.20908 1.01230 0.93060 1.00083 1.20938 0.98098 0.98286 0.94991 1.19920 0.93135 0.94901 1.06695 1.20601 1.00101 0.93898 1.02138 1.17715 0.88458 0.84646 1.02229 1.84764 1.76118 1.36432 1.32926 0.91922 0.91874 0.91322 0.85823 0.83869 0.74608 0.92328 0.87319 0.87706 0.87812 0.87630 0.86778 0.91475 0.90925 0.91214 0.76199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.79 36.00 0.35 -0.71 16 2 C -0.14 -1.83 5.90 -104.44 -0.62 -2.45 16 3 C -0.10 -1.37 9.69 -39.63 -0.38 -1.75 16 4 C -0.12 -2.13 8.69 -39.37 -0.34 -2.48 16 5 C 0.17 2.97 6.29 -83.72 -0.53 2.44 16 6 N -0.67 -12.25 4.67 -9.88 -0.05 -12.29 16 7 C 0.53 11.26 6.79 -10.99 -0.07 11.19 16 8 O -0.54 -12.39 12.17 5.55 0.07 -12.32 16 9 C 0.06 1.34 2.22 -94.07 -0.21 1.13 16 10 H 0.08 1.99 7.43 -51.93 -0.39 1.60 16 11 C -0.52 -12.58 7.78 -34.44 -0.27 -12.85 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.08 1.86 5.45 -17.82 -0.10 1.76 16 14 N -0.87 -22.22 13.01 55.43 0.72 -21.50 16 15 Si 0.90 19.37 29.54 -169.99 -5.02 14.35 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.01 -0.30 4.45 -104.63 -0.47 -0.76 16 20 C -0.08 -1.88 8.02 -39.58 -0.32 -2.20 16 21 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 22 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 23 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 24 C -0.10 -2.31 9.67 -39.59 -0.38 -2.69 16 25 C -0.14 -2.14 5.91 -104.29 -0.62 -2.76 16 26 C -0.11 -1.41 9.25 36.00 0.33 -1.08 16 27 C 0.11 1.57 6.65 -39.24 -0.26 1.31 16 28 O -0.49 -5.61 11.58 -19.43 -0.23 -5.84 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 32 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.14 2.70 6.19 -52.49 -0.33 2.37 16 34 H 0.42 7.06 7.66 -40.82 -0.31 6.75 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.11 2.44 7.68 -52.49 -0.40 2.03 16 37 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.11 2.48 7.95 -52.49 -0.42 2.06 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 43 H 0.07 0.94 7.17 -51.93 -0.37 0.57 16 44 H 0.38 2.59 9.06 45.56 0.41 3.01 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -28.80 369.90 -9.08 -37.89 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -5.09 Total: 15.35 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -5.07 Total: -21.22 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.68 Total: -33.79 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.16 Total: -18.16 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.80 -9.08 -37.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631311381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.009 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds