Wall clock time and date at job start Tue Mar 31 2020 13:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38224 * 119.96075 * 2 1 4 4 C 1.38115 * 120.12638 * 180.27554 * 3 2 1 5 5 C 1.38931 * 120.04078 * 359.49012 * 4 3 2 6 6 N 1.39918 * 120.04238 * 180.27508 * 5 4 3 7 7 C 1.34770 * 120.00400 * 325.47152 * 6 5 4 8 8 O 1.21293 * 119.99666 * 4.13330 * 7 6 5 9 9 C 1.50704 * 120.00475 * 184.13424 * 7 6 5 10 10 H 1.09003 * 109.46669 * 60.00223 * 9 7 6 11 11 C 1.50697 * 109.47043 * 299.99951 * 9 7 6 12 12 H 1.08001 * 120.00250 * 334.85457 * 11 9 7 13 13 C 1.37877 * 119.99930 * 154.85571 * 11 9 7 14 14 N 1.31516 * 119.99967 * 5.00316 * 13 11 9 15 15 Si 1.86797 * 119.99959 * 185.00338 * 13 11 9 16 16 H 1.48501 * 109.47313 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47349 * 120.00186 * 15 13 11 18 18 H 1.48505 * 109.47259 * 240.00045 * 15 13 11 19 19 C 1.50702 * 109.47181 * 179.97438 * 9 7 6 20 20 C 1.38234 * 119.99696 * 55.58604 * 19 9 7 21 21 C 1.38241 * 119.99562 * 179.78863 * 20 19 9 22 22 C 1.38235 * 119.99984 * 0.43862 * 21 20 19 23 23 C 1.38234 * 119.99848 * 359.81459 * 22 21 20 24 24 C 1.38231 * 119.99791 * 235.85937 * 19 9 7 25 25 C 1.38753 * 119.91640 * 0.25186 * 5 4 3 26 26 C 1.50698 * 120.06287 * 179.97438 * 25 5 4 27 27 C 1.38637 * 119.87335 * 359.97438 * 25 5 4 28 28 O 1.35900 * 120.01876 * 179.97438 * 27 25 5 29 29 H 1.09006 * 109.47414 * 270.23441 * 1 2 3 30 30 H 1.08998 * 109.47289 * 30.23396 * 1 2 3 31 31 H 1.09000 * 109.47317 * 150.23268 * 1 2 3 32 32 H 1.08007 * 119.93025 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.98011 * 179.76173 * 4 3 2 34 34 H 0.97005 * 119.99676 * 145.46665 * 6 5 4 35 35 H 0.97001 * 119.99759 * 179.97438 * 14 13 11 36 36 H 1.07993 * 120.00385 * 359.97438 * 20 19 9 37 37 H 1.08003 * 119.99662 * 180.27448 * 21 20 19 38 38 H 1.07998 * 119.99791 * 179.83389 * 22 21 20 39 39 H 1.08002 * 119.99806 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00700 * 359.97438 * 24 19 9 41 41 H 1.09002 * 109.46895 * 90.00436 * 26 25 5 42 42 H 1.09002 * 109.47194 * 209.99967 * 26 25 5 43 43 H 1.08994 * 109.47066 * 329.99676 * 26 25 5 44 44 H 0.96696 * 114.00061 * 90.00236 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1975 0.0000 4 6 3.5784 1.2015 -0.0057 5 6 4.2774 0.0009 -0.0008 6 7 5.6766 0.0049 -0.0008 7 6 6.3477 0.9657 -0.6663 8 8 5.7410 1.8689 -1.2022 9 6 7.8520 0.9178 -0.7446 10 1 8.1610 -0.0061 -1.2335 11 6 8.4292 0.9675 0.6466 12 1 7.8660 1.4206 1.4491 13 6 9.6763 0.4347 0.8949 14 7 10.4034 -0.0280 -0.0985 15 14 10.3332 0.3699 2.6424 16 1 9.3295 0.9501 3.5704 17 1 10.5990 -1.0416 3.0194 18 1 11.5938 1.1504 2.7266 19 6 8.3515 2.0972 -1.5387 20 6 8.0036 3.3810 -1.1624 21 6 8.4654 4.4631 -1.8883 22 6 9.2676 4.2608 -2.9958 23 6 9.6110 2.9766 -3.3751 24 6 9.1528 1.8948 -2.6467 25 6 3.5862 -1.2022 0.0046 26 6 4.3411 -2.5065 0.0093 27 6 2.1999 -1.2022 0.0056 28 8 1.5199 -2.3788 0.0103 29 1 -0.3634 0.0042 1.0277 30 1 -0.3634 0.8879 -0.5174 31 1 -0.3634 -0.8921 -0.5102 32 1 1.6554 2.1319 0.0004 33 1 4.1153 2.1386 -0.0096 34 1 6.1635 -0.6838 0.4782 35 1 11.2810 -0.4025 0.0762 36 1 7.3736 3.5388 -0.2995 37 1 8.1973 5.4663 -1.5916 38 1 9.6261 5.1060 -3.5644 39 1 10.2374 2.8186 -4.2406 40 1 9.4213 0.8916 -2.9431 41 1 4.5238 -2.8168 1.0381 42 1 3.7525 -3.2689 -0.5010 43 1 5.2929 -2.3773 -0.5058 44 1 1.3237 -2.7162 0.8950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631311381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:26 Heat of formation + Delta-G solvation = -56.542904 kcal Electronic energy + Delta-G solvation = -27191.317489 eV Core-core repulsion = 23458.342701 eV Total energy + Delta-G solvation = -3732.974788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75836 -40.53892 -39.39997 -37.59653 -35.89299 -35.53335 -33.35906 -32.85927 -31.69381 -31.51271 -29.32412 -27.89780 -27.08935 -25.63815 -23.60018 -23.21576 -22.56295 -21.57061 -21.05040 -19.36748 -18.79677 -18.22291 -17.57798 -17.16913 -16.84773 -16.41837 -16.12387 -15.91538 -15.58761 -15.48020 -15.28127 -14.67853 -14.41146 -14.21216 -14.03128 -13.99439 -13.94945 -13.62701 -13.50957 -13.32163 -13.05033 -12.86470 -12.81789 -12.79098 -12.57815 -12.40446 -12.16882 -11.97245 -11.69505 -11.46080 -11.35094 -10.98351 -10.66863 -10.44993 -9.53737 -9.48436 -9.27030 -8.88334 -8.21851 -6.36230 0.24796 0.31282 0.78096 0.80947 1.40651 1.44633 1.54065 1.79439 2.27606 2.40964 2.69708 3.06352 3.26713 3.37540 3.83560 3.97987 4.07607 4.17431 4.28833 4.29920 4.40361 4.43958 4.51958 4.60225 4.69566 4.74786 4.79687 4.85915 4.87731 4.92831 4.97359 5.06300 5.13983 5.25712 5.36038 5.39384 5.43368 5.44534 5.58901 5.60207 5.63611 5.79858 5.82342 5.92360 6.02935 6.19882 6.39409 6.56020 6.69913 6.89457 7.29885 7.35936 8.84777 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.004063 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.939724 B = 6889.859537 C = 8302.371406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.132 4.132 3 C -0.097 4.097 4 C -0.146 4.146 5 C 0.142 3.858 6 N -0.660 5.660 7 C 0.527 3.473 8 O -0.562 6.562 9 C 0.062 3.938 10 H 0.062 0.938 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.037 3.963 14 N -0.896 5.896 15 Si 0.955 3.045 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.287 1.287 19 C -0.038 4.038 20 C -0.107 4.107 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.147 4.147 26 C -0.107 4.107 27 C 0.119 3.881 28 O -0.492 6.492 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.420 0.580 35 H 0.267 0.733 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 -2.283 1.523 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.133 4.133 3 C -0.116 4.116 4 C -0.167 4.167 5 C 0.047 3.953 6 N -0.305 5.305 7 C 0.318 3.682 8 O -0.441 6.441 9 C 0.041 3.959 10 H 0.079 0.921 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.166 4.166 14 N -0.532 5.532 15 Si 0.781 3.219 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.213 1.213 19 C -0.039 4.039 20 C -0.126 4.126 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.164 4.164 27 C 0.074 3.926 28 O -0.305 6.305 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.135 0.865 34 H 0.258 0.742 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -13.305 -1.709 0.479 13.423 hybrid contribution 1.167 -0.405 1.554 1.985 sum -12.138 -2.115 2.033 12.488 Atomic orbital electron populations 1.20651 0.88411 1.03447 1.03244 1.20444 0.98221 0.91765 1.02903 1.21002 0.92533 0.98578 0.99442 1.21307 0.95172 0.97415 1.02790 1.17781 0.83069 0.93822 1.00654 1.43488 1.04143 1.31103 1.51746 1.21611 0.91473 0.80047 0.75051 1.90561 1.70852 1.35259 1.47404 1.17940 0.85898 0.94925 0.97185 0.92053 1.20773 1.03094 1.40455 0.91820 0.92644 1.25575 0.96494 0.93990 1.00543 1.70039 1.11327 1.39463 1.32335 0.85548 0.78048 0.78096 0.80252 1.19338 1.19658 1.21307 1.20008 0.95627 0.95239 0.92983 1.20812 0.99509 0.92885 0.99363 1.21292 0.99116 0.98621 0.96566 1.21248 0.99744 0.97270 0.97801 1.21290 1.00739 0.92764 1.00401 1.21040 0.99040 0.98924 0.95669 1.20151 0.94054 0.94756 1.06048 1.20618 0.99308 0.93134 1.03327 1.17771 0.88036 0.85727 1.01076 1.84711 1.75455 1.35299 1.35009 0.89796 0.90852 0.90883 0.83729 0.86542 0.74232 0.92358 0.88792 0.84803 0.83695 0.84549 0.87737 0.89549 0.89834 0.92603 0.73425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.79 71.23 0.70 -1.02 16 2 C -0.13 -3.25 5.90 -19.75 -0.12 -3.37 16 3 C -0.10 -2.73 9.69 22.24 0.22 -2.51 16 4 C -0.15 -5.20 8.69 22.41 0.19 -5.01 16 5 C 0.14 5.03 6.29 38.14 0.24 5.27 16 6 N -0.66 -25.60 4.67 -303.55 -1.42 -27.01 16 7 C 0.53 24.00 6.79 87.66 0.59 24.60 16 8 O -0.56 -27.43 12.17 -3.07 -0.04 -27.46 16 9 C 0.06 3.00 2.22 -13.03 -0.03 2.97 16 10 H 0.06 3.18 7.43 -2.39 -0.02 3.16 16 11 C -0.52 -26.38 7.78 25.60 0.20 -26.18 16 12 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 13 C 0.04 1.86 5.45 84.65 0.46 2.33 16 14 N -0.90 -47.12 13.01 21.45 0.28 -46.84 16 15 Si 0.96 40.40 29.54 68.60 2.03 42.42 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 18 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 19 C -0.04 -1.81 4.45 -19.87 -0.09 -1.90 16 20 C -0.11 -4.93 8.02 22.27 0.18 -4.75 16 21 C -0.14 -5.34 10.05 22.27 0.22 -5.11 16 22 C -0.14 -5.05 10.05 22.27 0.22 -4.82 16 23 C -0.13 -5.11 10.05 22.27 0.22 -4.89 16 24 C -0.13 -5.82 9.67 22.27 0.22 -5.60 16 25 C -0.15 -4.33 5.91 -19.65 -0.12 -4.45 16 26 C -0.11 -2.65 9.25 71.24 0.66 -2.00 16 27 C 0.12 3.05 6.65 22.49 0.15 3.20 16 28 O -0.49 -9.68 11.58 -92.43 -1.07 -10.75 16 29 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 31 H 0.07 1.21 7.53 -2.39 -0.02 1.20 16 32 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.12 4.72 6.19 -2.91 -0.02 4.70 16 34 H 0.42 15.11 7.66 -92.70 -0.71 14.40 16 35 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 36 H 0.09 4.46 7.68 -2.91 -0.02 4.44 16 37 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 38 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.10 4.79 7.95 -2.91 -0.02 4.76 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.08 1.87 7.53 -2.39 -0.02 1.85 16 43 H 0.05 1.53 7.17 -2.39 -0.02 1.51 16 44 H 0.41 4.02 9.06 -74.06 -0.67 3.35 16 Total: -1.00 -64.37 369.90 3.57 -60.80 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -0.34 Total: 42.08 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 4.13 Total: -33.24 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -1.14 Total: -73.85 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.11 Total: -38.22 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -64.37 3.57 -60.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631311381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.261 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds