Wall clock time and date at job start Tue Mar 31 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47166 * 120.00228 * 2 1 3 5 5 N 1.46498 * 109.47523 * 294.68251 * 4 2 1 6 6 S 1.65598 * 119.99928 * 114.23138 * 5 4 2 7 7 O 1.42101 * 106.39984 * 178.74231 * 6 5 4 8 8 O 1.42093 * 106.40692 * 311.66591 * 6 5 4 9 9 C 1.76199 * 107.21428 * 65.21023 * 6 5 4 10 10 C 1.38639 * 119.74680 * 269.72095 * 9 6 5 11 11 C 1.37616 * 120.25132 * 179.72008 * 10 9 6 12 12 C 1.40724 * 119.73874 * 0.57535 * 11 10 9 13 13 C 1.41399 * 120.23993 * 179.68310 * 12 11 10 14 14 H 1.08004 * 119.99848 * 207.51131 * 13 12 11 15 15 C 1.39947 * 120.00305 * 27.50280 * 13 12 11 16 16 N 1.30820 * 120.00025 * 13.90648 * 15 13 12 17 17 Si 1.86798 * 119.99805 * 193.90273 * 15 13 12 18 18 H 1.48504 * 109.46901 * 90.00625 * 17 15 13 19 19 H 1.48501 * 109.46759 * 210.00289 * 17 15 13 20 20 H 1.48495 * 109.47668 * 330.00297 * 17 15 13 21 21 C 1.40708 * 119.51623 * 359.70020 * 12 11 10 22 22 C 1.37624 * 119.74058 * 0.02562 * 21 12 11 23 23 C 1.52995 * 109.47030 * 174.68093 * 4 2 1 24 24 C 1.53007 * 109.47094 * 175.35976 * 23 4 2 25 25 C 1.52998 * 109.47435 * 295.35480 * 23 4 2 26 26 H 1.09008 * 109.46912 * 305.49861 * 1 2 3 27 27 H 1.09005 * 109.47208 * 65.49581 * 1 2 3 28 28 H 1.08998 * 109.47693 * 185.49840 * 1 2 3 29 29 H 1.09000 * 109.47184 * 240.00498 * 2 1 3 30 30 H 1.08994 * 109.47038 * 183.96932 * 3 2 1 31 31 H 1.08994 * 109.47563 * 303.97688 * 3 2 1 32 32 H 1.09010 * 109.46912 * 63.97780 * 3 2 1 33 33 H 1.09007 * 109.47055 * 54.68441 * 4 2 1 34 34 H 0.97003 * 119.99922 * 293.96804 * 5 4 2 35 35 H 1.08005 * 119.87685 * 359.97438 * 10 9 6 36 36 H 1.08001 * 120.13100 * 180.28103 * 11 10 9 37 37 H 0.96992 * 120.00520 * 179.97438 * 16 15 13 38 38 H 1.07992 * 120.13196 * 179.97438 * 21 12 11 39 39 H 1.08004 * 119.87441 * 179.97438 * 22 21 12 40 40 H 1.08992 * 109.47417 * 55.35781 * 23 4 2 41 41 H 1.09001 * 109.46854 * 180.02562 * 24 23 4 42 42 H 1.09003 * 109.46948 * 299.99875 * 24 23 4 43 43 H 1.08993 * 109.47069 * 60.00189 * 24 23 4 44 44 H 1.09008 * 109.46881 * 66.09139 * 25 23 4 45 45 H 1.08998 * 109.47634 * 186.08711 * 25 23 4 46 46 H 1.09002 * 109.47671 * 306.09592 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6590 0.0391 2.4420 6 16 0.5856 -0.6045 3.5264 7 8 0.4490 0.3499 4.5703 8 8 -0.5132 -1.0866 2.7654 9 6 1.3534 -2.0192 4.2431 10 6 1.1851 -3.2642 3.6569 11 6 1.7848 -4.3752 4.2047 12 6 2.5613 -4.2457 5.3711 13 6 3.1767 -5.3812 5.9467 14 1 3.3794 -5.4061 7.0073 15 6 3.5229 -6.4727 5.1422 16 7 3.5341 -6.3481 3.8400 17 14 3.9691 -8.1076 5.9279 18 1 2.7436 -8.9311 6.0872 19 1 4.9384 -8.8250 5.0613 20 1 4.5800 -7.8665 7.2598 21 6 2.7205 -2.9780 5.9607 22 6 2.1162 -1.8799 5.3923 23 6 3.5641 -0.8381 1.1841 24 6 4.0843 -1.4548 2.4842 25 6 3.9574 -1.7290 0.0041 26 1 -0.3633 0.5968 0.8367 27 1 -0.3634 0.4263 -0.9351 28 1 -0.3634 -1.0229 0.0985 29 1 1.8933 -0.5137 -0.8900 30 1 3.1276 1.4433 -0.0711 31 1 1.6197 1.9765 -0.8521 32 1 1.7360 1.9353 0.9236 33 1 1.6010 -1.7179 1.2980 34 1 2.0385 0.9180 2.5986 35 1 0.5844 -3.3621 2.7647 36 1 1.6561 -5.3434 3.7439 37 1 3.7744 -7.1044 3.2824 38 1 3.3139 -2.8672 6.8562 39 1 2.2366 -0.9060 5.8433 40 1 3.9991 0.1525 1.0523 41 1 5.1702 -1.5376 2.4379 42 1 3.8042 -0.8201 3.3249 43 1 3.6493 -2.4454 2.6159 44 1 3.6826 -1.2378 -0.9294 45 1 5.0337 -1.9005 0.0211 46 1 3.4362 -2.6833 0.0796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647110732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:25 Heat of formation + Delta-G solvation = -90.232659 kcal Electronic energy + Delta-G solvation = -27327.794518 eV Core-core repulsion = 23728.802785 eV Total energy + Delta-G solvation = -3598.991734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.65581 -37.57403 -36.40224 -35.08625 -34.02600 -33.43680 -32.15072 -30.23644 -29.47169 -27.08179 -26.73656 -25.79865 -25.40675 -21.50495 -21.14450 -20.76157 -19.38299 -18.84696 -17.60034 -17.03582 -16.50763 -15.91235 -15.49818 -14.98553 -14.53442 -14.43829 -14.10008 -13.81280 -13.39068 -13.19556 -12.94795 -12.61569 -12.40008 -12.22808 -12.13646 -12.00546 -11.95849 -11.69173 -11.66891 -11.43046 -11.34901 -11.26080 -11.20866 -11.07997 -10.97769 -10.88548 -10.76102 -10.65052 -10.45219 -10.34741 -10.08607 -9.73653 -9.55060 -9.53694 -8.88851 -7.90720 -7.68421 -7.09920 -4.79265 1.31363 2.26104 2.89149 2.91035 2.92936 2.93879 3.68121 3.78678 4.27135 4.57331 4.76429 4.98059 5.03739 5.21058 5.26592 5.38267 5.41912 5.48745 5.65894 5.70564 5.75285 5.83006 6.02316 6.03661 6.06304 6.09666 6.12269 6.13444 6.22412 6.27867 6.30478 6.41075 6.46397 6.60819 6.67880 6.71244 6.73623 6.91950 6.93445 7.05256 7.34719 7.40392 7.43728 7.63842 7.78272 7.98986 8.33683 8.53298 8.65481 9.81489 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.004390 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.843665 B = 6377.210507 C = 7191.841893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.147 4.147 4 C 0.169 3.831 5 N -1.116 6.116 6 S 2.688 3.312 7 O -0.991 6.991 8 O -0.980 6.980 9 C -0.778 4.778 10 C -0.016 4.016 11 C -0.177 4.177 12 C 0.143 3.857 13 C -0.440 4.440 14 H 0.086 0.914 15 C 0.073 3.927 16 N -0.772 5.772 17 Si 0.916 3.084 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.235 4.235 22 C 0.003 3.997 23 C -0.102 4.102 24 C -0.147 4.147 25 C -0.147 4.147 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.287 0.713 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 6.869 -7.838 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.062 3.938 5 N -0.871 5.871 6 S 2.787 3.213 7 O -0.982 6.982 8 O -0.970 6.970 9 C -0.874 4.874 10 C -0.037 4.037 11 C -0.197 4.197 12 C 0.139 3.861 13 C -0.468 4.468 14 H 0.104 0.896 15 C -0.148 4.148 16 N -0.395 5.395 17 Si 0.740 3.260 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.256 4.256 22 C -0.017 4.017 23 C -0.123 4.123 24 C -0.204 4.204 25 C -0.205 4.205 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.241 0.759 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.849 6.936 -7.942 10.579 hybrid contribution 1.097 -0.917 0.474 1.506 sum 1.946 6.019 -7.468 9.787 Atomic orbital electron populations 1.21835 0.94510 1.03009 1.00903 1.21525 0.96526 0.96624 0.98045 1.21845 1.00754 0.96190 1.01620 1.20787 0.94493 0.94680 0.83868 1.55773 1.65814 1.29149 1.36379 1.01370 0.73636 0.73981 0.72316 1.93485 1.86271 1.62252 1.56183 1.93495 1.50132 1.81965 1.71436 1.29163 1.29838 1.14463 1.13928 1.20235 0.95110 0.91770 0.96545 1.21319 1.00738 0.97718 0.99927 1.17832 0.86469 0.91529 0.90238 1.19921 1.32105 0.98392 0.96358 0.89637 1.26068 0.93152 1.00959 0.94644 1.69785 1.31871 1.32721 1.05100 0.86159 0.79310 0.80271 0.80270 1.18894 1.19924 1.18305 1.21058 1.07798 0.92835 1.03898 1.20124 0.91859 0.97495 0.92249 1.21470 0.94835 0.99603 0.96343 1.21865 0.99982 1.02475 0.96121 1.21861 1.01403 0.99994 0.97214 0.92611 0.93473 0.91712 0.90318 0.92594 0.93063 0.92511 0.89191 0.75908 0.88090 0.86095 0.90155 0.88375 0.88036 0.91152 0.93575 0.92431 0.91004 0.92848 0.92677 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.16 37.16 0.30 -1.59 16 2 C -0.11 -1.25 2.61 -90.62 -0.24 -1.49 16 3 C -0.15 -1.48 8.64 37.16 0.32 -1.16 16 4 C 0.17 2.30 1.53 -67.93 -0.10 2.19 16 5 N -1.12 -16.16 3.55 -4.89 -0.02 -16.18 16 6 S 2.69 50.30 5.59 -107.50 -0.60 49.70 16 7 O -0.99 -20.83 17.26 -57.17 -0.99 -21.82 16 8 O -0.98 -19.96 15.42 -57.17 -0.88 -20.84 16 9 C -0.78 -16.28 5.14 -39.29 -0.20 -16.49 16 10 C -0.02 -0.36 8.83 -39.66 -0.35 -0.71 16 11 C -0.18 -4.23 8.67 -38.87 -0.34 -4.57 16 12 C 0.14 3.50 5.55 -106.82 -0.59 2.91 16 13 C -0.44 -10.61 9.06 -37.74 -0.34 -10.95 16 14 H 0.09 1.98 7.88 -52.48 -0.41 1.56 16 15 C 0.07 1.65 5.20 -17.34 -0.09 1.56 16 16 N -0.77 -17.87 10.93 55.55 0.61 -17.27 16 17 Si 0.92 16.96 29.58 -169.99 -5.03 11.93 16 18 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 19 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 21 C -0.24 -5.39 9.80 -38.87 -0.38 -5.77 16 22 C 0.00 0.06 9.37 -39.66 -0.37 -0.31 16 23 C -0.10 -1.30 2.54 -90.62 -0.23 -1.53 16 24 C -0.15 -2.28 8.45 37.16 0.31 -1.97 16 25 C -0.15 -1.72 8.79 37.16 0.33 -1.39 16 26 H 0.05 0.79 7.44 -51.92 -0.39 0.41 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 29 H 0.08 0.83 6.45 -51.93 -0.33 0.50 16 30 H 0.06 0.52 6.67 -51.93 -0.35 0.17 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.58 6.67 -51.92 -0.35 0.23 16 33 H 0.09 1.37 7.55 -51.93 -0.39 0.98 16 34 H 0.41 5.03 7.68 -34.47 -0.26 4.76 16 35 H 0.10 2.07 7.59 -52.48 -0.40 1.68 16 36 H 0.12 2.97 6.24 -52.49 -0.33 2.65 16 37 H 0.29 6.01 8.30 -40.82 -0.34 5.68 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.10 2.02 7.60 -52.48 -0.40 1.62 16 40 H 0.07 0.79 6.46 -51.93 -0.34 0.46 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.91 7.27 -51.93 -0.38 0.53 16 43 H 0.07 1.33 7.48 -51.93 -0.39 0.94 16 44 H 0.05 0.53 6.74 -51.92 -0.35 0.18 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -27.66 370.79 -10.44 -38.10 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -7.15 Total: 12.07 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: -1.97 Total: -41.28 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.59 Total: -33.45 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.87 Total: -42.66 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 50.30 SS G_CDS: -0.60 Total: 49.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.66 -10.44 -38.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647110732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.132 kcal (2) G-P(sol) polarization free energy of solvation -27.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds