Wall clock time and date at job start Tue Mar 31 2020 14:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47181 * 2 1 4 4 C 1.52999 * 109.47166 * 120.00228 * 2 1 3 5 5 N 1.46498 * 109.47523 * 294.68251 * 4 2 1 6 6 S 1.65598 * 119.99928 * 114.23138 * 5 4 2 7 7 O 1.42101 * 106.39984 * 178.74231 * 6 5 4 8 8 O 1.42093 * 106.40692 * 311.66591 * 6 5 4 9 9 C 1.76199 * 107.21428 * 65.21023 * 6 5 4 10 10 C 1.38639 * 119.74680 * 269.72095 * 9 6 5 11 11 C 1.37616 * 120.25132 * 179.72008 * 10 9 6 12 12 C 1.40724 * 119.73874 * 0.57535 * 11 10 9 13 13 C 1.41399 * 120.23993 * 179.68310 * 12 11 10 14 14 H 1.08004 * 119.99848 * 207.51131 * 13 12 11 15 15 C 1.39947 * 120.00305 * 27.50280 * 13 12 11 16 16 N 1.30820 * 120.00025 * 13.90648 * 15 13 12 17 17 Si 1.86798 * 119.99805 * 193.90273 * 15 13 12 18 18 H 1.48504 * 109.46901 * 90.00625 * 17 15 13 19 19 H 1.48501 * 109.46759 * 210.00289 * 17 15 13 20 20 H 1.48495 * 109.47668 * 330.00297 * 17 15 13 21 21 C 1.40708 * 119.51623 * 359.70020 * 12 11 10 22 22 C 1.37624 * 119.74058 * 0.02562 * 21 12 11 23 23 C 1.52995 * 109.47030 * 174.68093 * 4 2 1 24 24 C 1.53007 * 109.47094 * 175.35976 * 23 4 2 25 25 C 1.52998 * 109.47435 * 295.35480 * 23 4 2 26 26 H 1.09008 * 109.46912 * 305.49861 * 1 2 3 27 27 H 1.09005 * 109.47208 * 65.49581 * 1 2 3 28 28 H 1.08998 * 109.47693 * 185.49840 * 1 2 3 29 29 H 1.09000 * 109.47184 * 240.00498 * 2 1 3 30 30 H 1.08994 * 109.47038 * 183.96932 * 3 2 1 31 31 H 1.08994 * 109.47563 * 303.97688 * 3 2 1 32 32 H 1.09010 * 109.46912 * 63.97780 * 3 2 1 33 33 H 1.09007 * 109.47055 * 54.68441 * 4 2 1 34 34 H 0.97003 * 119.99922 * 293.96804 * 5 4 2 35 35 H 1.08005 * 119.87685 * 359.97438 * 10 9 6 36 36 H 1.08001 * 120.13100 * 180.28103 * 11 10 9 37 37 H 0.96992 * 120.00520 * 179.97438 * 16 15 13 38 38 H 1.07992 * 120.13196 * 179.97438 * 21 12 11 39 39 H 1.08004 * 119.87441 * 179.97438 * 22 21 12 40 40 H 1.08992 * 109.47417 * 55.35781 * 23 4 2 41 41 H 1.09001 * 109.46854 * 180.02562 * 24 23 4 42 42 H 1.09003 * 109.46948 * 299.99875 * 24 23 4 43 43 H 1.08993 * 109.47069 * 60.00189 * 24 23 4 44 44 H 1.09008 * 109.46881 * 66.09139 * 25 23 4 45 45 H 1.08998 * 109.47634 * 186.08711 * 25 23 4 46 46 H 1.09002 * 109.47671 * 306.09592 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6590 0.0391 2.4420 6 16 0.5856 -0.6045 3.5264 7 8 0.4490 0.3499 4.5703 8 8 -0.5132 -1.0866 2.7654 9 6 1.3534 -2.0192 4.2431 10 6 1.1851 -3.2642 3.6569 11 6 1.7848 -4.3752 4.2047 12 6 2.5613 -4.2457 5.3711 13 6 3.1767 -5.3812 5.9467 14 1 3.3794 -5.4061 7.0073 15 6 3.5229 -6.4727 5.1422 16 7 3.5341 -6.3481 3.8400 17 14 3.9691 -8.1076 5.9279 18 1 2.7436 -8.9311 6.0872 19 1 4.9384 -8.8250 5.0613 20 1 4.5800 -7.8665 7.2598 21 6 2.7205 -2.9780 5.9607 22 6 2.1162 -1.8799 5.3923 23 6 3.5641 -0.8381 1.1841 24 6 4.0843 -1.4548 2.4842 25 6 3.9574 -1.7290 0.0041 26 1 -0.3633 0.5968 0.8367 27 1 -0.3634 0.4263 -0.9351 28 1 -0.3634 -1.0229 0.0985 29 1 1.8933 -0.5137 -0.8900 30 1 3.1276 1.4433 -0.0711 31 1 1.6197 1.9765 -0.8521 32 1 1.7360 1.9353 0.9236 33 1 1.6010 -1.7179 1.2980 34 1 2.0385 0.9180 2.5986 35 1 0.5844 -3.3621 2.7647 36 1 1.6561 -5.3434 3.7439 37 1 3.7744 -7.1044 3.2824 38 1 3.3139 -2.8672 6.8562 39 1 2.2366 -0.9060 5.8433 40 1 3.9991 0.1525 1.0523 41 1 5.1702 -1.5376 2.4379 42 1 3.8042 -0.8201 3.3249 43 1 3.6493 -2.4454 2.6159 44 1 3.6826 -1.2378 -0.9294 45 1 5.0337 -1.9005 0.0211 46 1 3.4362 -2.6833 0.0796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647110732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:24 Heat of formation + Delta-G solvation = -105.476188 kcal Electronic energy + Delta-G solvation = -27328.455527 eV Core-core repulsion = 23728.802785 eV Total energy + Delta-G solvation = -3599.652743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.78221 -39.31628 -38.03203 -36.72724 -35.75555 -34.48012 -33.34727 -32.01365 -31.26534 -28.00824 -27.84099 -27.56279 -26.50924 -23.26183 -22.92623 -21.81280 -20.47439 -20.31871 -19.38200 -18.57423 -18.08922 -17.22176 -17.10537 -16.19088 -15.90852 -15.74796 -15.50261 -15.13054 -14.97202 -14.84227 -14.07578 -14.00867 -13.90803 -13.65267 -13.61574 -13.31084 -13.15897 -13.02063 -12.99298 -12.90307 -12.86462 -12.78410 -12.70382 -12.56750 -12.18361 -12.11039 -11.93097 -11.85538 -11.75729 -11.51299 -11.48186 -11.25514 -11.19173 -11.09888 -10.13637 -9.69641 -9.48913 -8.80676 -6.61713 -0.23757 0.52490 1.09412 1.36499 1.43246 1.49888 2.12924 2.30827 2.58147 2.99455 3.56738 3.65372 3.70533 3.97762 4.08878 4.25675 4.30590 4.33087 4.38539 4.52748 4.56449 4.75520 4.81429 4.87953 4.90682 4.93751 4.97257 5.00422 5.11836 5.13540 5.16882 5.21698 5.23857 5.27471 5.32399 5.37025 5.45751 5.56503 5.58694 5.62278 5.62967 5.71597 5.80006 5.96847 6.20042 6.29755 6.53540 6.73204 6.84440 8.13777 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.004390 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.843665 B = 6377.210507 C = 7191.841893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.147 4.147 4 C 0.164 3.836 5 N -1.099 6.099 6 S 2.716 3.284 7 O -1.009 7.009 8 O -0.995 6.995 9 C -0.781 4.781 10 C -0.014 4.014 11 C -0.197 4.197 12 C 0.118 3.882 13 C -0.474 4.474 14 H 0.086 0.914 15 C 0.037 3.963 16 N -0.799 5.799 17 Si 0.987 3.013 18 H -0.262 1.262 19 H -0.264 1.264 20 H -0.256 1.256 21 C -0.251 4.251 22 C 0.001 3.999 23 C -0.094 4.094 24 C -0.145 4.145 25 C -0.146 4.146 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.422 0.578 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.296 0.704 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.034 0.966 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 8.124 -9.195 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.204 4.204 4 C 0.057 3.943 5 N -0.859 5.859 6 S 2.811 3.189 7 O -1.000 7.000 8 O -0.985 6.985 9 C -0.873 4.873 10 C -0.034 4.034 11 C -0.218 4.218 12 C 0.115 3.885 13 C -0.501 4.501 14 H 0.104 0.896 15 C -0.181 4.181 16 N -0.423 5.423 17 Si 0.807 3.193 18 H -0.186 1.186 19 H -0.189 1.189 20 H -0.180 1.180 21 C -0.272 4.272 22 C -0.019 4.019 23 C -0.114 4.114 24 C -0.203 4.203 25 C -0.204 4.204 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.259 0.741 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.659 8.190 -9.283 12.490 hybrid contribution 0.807 -1.186 0.808 1.647 sum 2.466 7.003 -8.474 11.267 Atomic orbital electron populations 1.21864 0.95660 1.01628 1.01444 1.21512 0.95486 0.97902 0.97245 1.21860 1.01716 0.94660 1.02157 1.20957 0.95173 0.93938 0.84222 1.55339 1.65331 1.29589 1.35652 1.00560 0.73438 0.72849 0.72032 1.93456 1.86707 1.62271 1.57564 1.93480 1.51175 1.82221 1.71579 1.29588 1.28645 1.15356 1.13761 1.20354 0.94644 0.91837 0.96611 1.21282 1.02062 0.97794 1.00623 1.18128 0.87053 0.92505 0.90808 1.20168 1.33607 0.99624 0.96737 0.89576 1.26861 0.92520 1.03823 0.94930 1.69824 1.32163 1.34020 1.06262 0.85115 0.79102 0.75726 0.79387 1.18648 1.18851 1.18006 1.21239 1.08571 0.92882 1.04483 1.20354 0.91391 0.97886 0.92245 1.21436 0.93933 1.00865 0.95134 1.21826 1.00205 1.00476 0.97751 1.21862 1.01512 0.99175 0.97815 0.94050 0.91356 0.93706 0.88545 0.91145 0.91711 0.92795 0.91340 0.74105 0.87190 0.87477 0.89329 0.87574 0.86232 0.88494 0.93044 0.93006 0.94707 0.90304 0.92214 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.16 71.98 0.59 -3.02 16 2 C -0.10 -2.08 2.61 -10.79 -0.03 -2.11 16 3 C -0.15 -2.38 8.64 71.98 0.62 -1.76 16 4 C 0.16 4.20 1.53 44.99 0.07 4.27 16 5 N -1.10 -30.21 3.55 -169.39 -0.60 -30.81 16 6 S 2.72 100.08 5.59 -56.49 -0.32 99.77 16 7 O -1.01 -41.33 17.26 -128.00 -2.21 -43.54 16 8 O -0.99 -40.23 15.42 -128.00 -1.97 -42.21 16 9 C -0.78 -33.07 5.14 22.46 0.12 -32.95 16 10 C -0.01 -0.66 8.83 22.22 0.20 -0.46 16 11 C -0.20 -9.91 8.67 22.73 0.20 -9.71 16 12 C 0.12 6.05 5.55 -21.29 -0.12 5.93 16 13 C -0.47 -23.69 9.06 23.46 0.21 -23.48 16 14 H 0.09 4.12 7.88 -2.91 -0.02 4.10 16 15 C 0.04 1.72 5.20 85.26 0.44 2.17 16 16 N -0.80 -38.15 10.93 21.83 0.24 -37.91 16 17 Si 0.99 34.95 29.58 68.60 2.03 36.98 16 18 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 19 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 21 C -0.25 -11.86 9.80 22.73 0.22 -11.64 16 22 C 0.00 0.05 9.37 22.22 0.21 0.25 16 23 C -0.09 -2.19 2.54 -10.79 -0.03 -2.21 16 24 C -0.15 -4.45 8.45 71.98 0.61 -3.84 16 25 C -0.15 -3.12 8.79 71.98 0.63 -2.48 16 26 H 0.04 1.11 7.44 -2.38 -0.02 1.09 16 27 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.04 1.25 8.02 -2.39 -0.02 1.23 16 29 H 0.10 1.69 6.45 -2.39 -0.02 1.67 16 30 H 0.07 0.96 6.67 -2.39 -0.02 0.95 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.91 6.67 -2.38 -0.02 0.90 16 33 H 0.07 2.08 7.55 -2.38 -0.02 2.06 16 34 H 0.42 9.40 7.68 -96.74 -0.74 8.66 16 35 H 0.11 4.68 7.59 -2.91 -0.02 4.66 16 36 H 0.11 5.58 6.24 -2.91 -0.02 5.56 16 37 H 0.30 12.63 8.30 -92.71 -0.77 11.86 16 38 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.12 4.69 7.60 -2.91 -0.02 4.67 16 40 H 0.10 1.81 6.46 -2.39 -0.02 1.79 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.60 7.27 -2.39 -0.02 1.59 16 43 H 0.03 1.32 7.48 -2.39 -0.02 1.30 16 44 H 0.08 1.29 6.74 -2.38 -0.02 1.27 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -60.93 370.79 1.34 -59.58 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: 0.23 Total: 39.20 kcal Atomic # 6 Polarization: -85.01 SS G_CDS: 3.94 Total: -81.07 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.36 Total: -68.72 kcal Atomic # 8 Polarization: -81.56 SS G_CDS: -4.18 Total: -85.74 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Atomic # 16 Polarization: 100.08 SS G_CDS: -0.32 Total: 99.77 kcal Total: -60.93 1.34 -59.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647110732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.894 kcal (2) G-P(sol) polarization free energy of solvation -60.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds