Wall clock time and date at job start Tue Mar 31 2020 13:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 120.00021 * 2 1 4 4 C 1.38216 * 119.99889 * 180.21189 * 3 2 1 5 5 C 1.38260 * 119.99920 * 359.85141 * 4 3 2 6 6 C 1.50700 * 119.99775 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46801 * 239.97722 * 6 5 4 8 8 C 1.52998 * 109.47084 * 359.97438 * 6 5 4 9 9 C 1.53004 * 109.47113 * 119.97634 * 6 5 4 10 10 C 1.38213 * 119.99978 * 359.95538 * 5 4 3 11 11 C 1.38218 * 119.99923 * 179.81110 * 2 1 3 12 12 S 1.76205 * 120.00190 * 359.97438 * 11 2 1 13 13 O 1.42100 * 106.40233 * 310.87740 * 12 11 2 14 14 O 1.42099 * 106.40386 * 177.95128 * 12 11 2 15 15 N 1.65598 * 107.21387 * 64.41314 * 12 11 2 16 16 C 1.46500 * 120.00282 * 65.97475 * 15 12 11 17 17 H 1.09007 * 109.46692 * 23.03552 * 16 15 12 18 18 C 1.53004 * 109.47108 * 263.04092 * 16 15 12 19 19 C 1.50696 * 109.47698 * 143.03653 * 16 15 12 20 20 H 1.08001 * 119.99598 * 359.97438 * 19 16 15 21 21 C 1.37872 * 120.00508 * 180.02562 * 19 16 15 22 22 N 1.31517 * 119.99572 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 120.00143 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47001 * 90.00428 * 23 21 19 25 25 H 1.48500 * 109.47329 * 209.99806 * 23 21 19 26 26 H 1.48498 * 109.47521 * 329.99948 * 23 21 19 27 27 H 1.09000 * 109.47000 * 272.48863 * 1 2 3 28 28 H 1.08993 * 109.47306 * 32.49136 * 1 2 3 29 29 H 1.09005 * 109.46971 * 152.49054 * 1 2 3 30 30 H 1.07994 * 119.99858 * 0.04015 * 3 2 1 31 31 H 1.07997 * 119.99954 * 179.83270 * 4 3 2 32 32 H 1.09000 * 109.47163 * 59.99950 * 7 6 5 33 33 H 1.08997 * 109.46830 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.46767 * 299.99840 * 7 6 5 35 35 H 1.08997 * 109.47622 * 59.99861 * 8 6 5 36 36 H 1.09000 * 109.46849 * 180.02562 * 8 6 5 37 37 H 1.09000 * 109.46780 * 299.99596 * 8 6 5 38 38 H 1.08997 * 109.46806 * 60.00126 * 9 6 5 39 39 H 1.09000 * 109.46656 * 179.97438 * 9 6 5 40 40 H 1.08997 * 109.46934 * 299.99735 * 9 6 5 41 41 H 1.08004 * 119.99939 * 179.97438 * 10 5 4 42 42 H 0.97003 * 120.00619 * 245.97135 * 15 12 11 43 43 H 1.09000 * 109.46706 * 294.12551 * 18 16 15 44 44 H 1.08999 * 109.46857 * 174.12679 * 18 16 15 45 45 H 1.08996 * 109.46970 * 54.12624 * 18 16 15 46 46 H 0.97008 * 119.99579 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0044 5 6 4.2717 -0.0001 -0.0057 6 6 5.7787 -0.0001 -0.0112 7 6 6.2842 -0.7231 -1.2613 8 6 6.2887 1.4424 -0.0150 9 6 6.2932 -0.7196 1.2373 10 6 3.5806 -1.1970 -0.0017 11 6 2.1981 -1.1970 0.0039 12 16 1.3171 -2.7230 0.0097 13 8 0.3443 -2.6208 1.0404 14 8 2.2962 -3.7518 -0.0358 15 7 0.4799 -2.8109 -1.4164 16 6 1.2039 -2.9142 -2.6858 17 1 2.1987 -3.3215 -2.5045 18 6 1.3285 -1.5258 -3.3164 19 6 0.4510 -3.8250 -3.6210 20 1 -0.4741 -4.2815 -3.3015 21 6 0.9437 -4.0762 -4.8839 22 7 2.0711 -3.5214 -5.2723 23 14 0.0107 -5.2058 -6.0428 24 1 -0.9492 -4.4069 -6.8464 25 1 0.9697 -5.8859 -6.9499 26 1 -0.7302 -6.2223 -5.2536 27 1 -0.3633 0.0446 1.0267 28 1 -0.3633 0.8667 -0.5520 29 1 -0.3633 -0.9115 -0.4747 30 1 1.6583 2.1326 0.0007 31 1 4.1205 2.1326 -0.0072 32 1 5.9176 -0.2104 -2.1507 33 1 7.3741 -0.7235 -1.2650 34 1 5.9208 -1.7507 -1.2585 35 1 5.9286 1.9576 0.8755 36 1 7.3787 1.4424 -0.0194 37 1 5.9222 1.9549 -0.9045 38 1 5.9299 -1.7473 1.2399 39 1 7.3832 -0.7200 1.2331 40 1 5.9331 -0.2045 2.1278 41 1 4.1206 -2.1324 -0.0032 42 1 -0.4900 -2.7940 -1.4114 43 1 0.3389 -1.1624 -3.5931 44 1 1.9555 -1.5857 -4.2060 45 1 1.7799 -0.8402 -2.5992 46 1 2.4179 -3.6985 -6.1607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649701832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:58 Heat of formation + Delta-G solvation = -88.924403 kcal Electronic energy + Delta-G solvation = -27133.675198 eV Core-core repulsion = 23534.740194 eV Total energy + Delta-G solvation = -3598.935004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99482 -38.40610 -37.75337 -37.20242 -36.93106 -34.17661 -32.85559 -32.40374 -30.16757 -28.31172 -28.14135 -27.69756 -27.23618 -23.97706 -23.10845 -22.81066 -21.01309 -20.03054 -19.11234 -18.09215 -17.77617 -17.30361 -16.93941 -16.69417 -16.00046 -15.61427 -15.36162 -15.27089 -14.77705 -14.72927 -14.53119 -14.52818 -14.06274 -13.59451 -13.46688 -13.40964 -13.36233 -13.20343 -13.05580 -13.04201 -12.87253 -12.81762 -12.75280 -12.59888 -12.55479 -12.43929 -12.23168 -12.05046 -11.99503 -11.83242 -11.54715 -11.37723 -11.11691 -10.60412 -10.30516 -10.06425 -9.54107 -8.14631 -6.28323 -0.52882 -0.11386 0.32093 1.44303 1.46022 1.55823 2.10337 2.43803 2.49927 2.80952 3.15517 3.39954 3.61882 3.75963 3.85667 3.99073 4.09377 4.13633 4.33923 4.36555 4.52866 4.55796 4.67453 4.73536 4.74972 4.80476 4.88527 4.88869 4.92296 4.99300 5.00819 5.03273 5.03952 5.12330 5.18042 5.20792 5.28023 5.33648 5.40431 5.42860 5.58496 5.58877 5.75052 5.93772 6.01328 6.11613 6.39836 6.81514 7.40887 8.91208 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.004674 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.851303 B = 5988.668429 C = 6831.669868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.006 3.994 3 C -0.139 4.139 4 C -0.061 4.061 5 C -0.102 4.102 6 C -0.029 4.029 7 C -0.145 4.145 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.035 4.035 11 C -0.678 4.678 12 S 2.696 3.304 13 O -0.987 6.987 14 O -1.005 7.005 15 N -1.097 6.097 16 C 0.277 3.723 17 H 0.015 0.985 18 C -0.138 4.138 19 C -0.542 4.542 20 H 0.065 0.935 21 C 0.018 3.982 22 N -0.914 5.914 23 Si 0.962 3.038 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.271 1.271 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.121 0.879 42 H 0.417 0.583 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 14.231 9.955 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 C -0.158 4.158 4 C -0.078 4.078 5 C -0.103 4.103 6 C -0.029 4.029 7 C -0.202 4.202 8 C -0.197 4.197 9 C -0.200 4.200 10 C -0.055 4.055 11 C -0.768 4.768 12 S 2.790 3.210 13 O -0.977 6.977 14 O -0.995 6.995 15 N -0.858 5.858 16 C 0.172 3.828 17 H 0.033 0.967 18 C -0.197 4.197 19 C -0.582 4.582 20 H 0.084 0.916 21 C -0.182 4.182 22 N -0.552 5.552 23 Si 0.787 3.213 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.196 1.196 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.182 0.818 31 H 0.184 0.816 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.139 0.861 42 H 0.253 0.747 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.527 13.570 10.465 18.005 hybrid contribution -0.540 -0.610 -1.115 1.381 sum 4.987 12.960 9.349 16.740 Atomic orbital electron populations 1.21331 0.89657 1.04622 1.04683 1.19776 0.96588 0.91891 0.91270 1.21519 0.94715 0.97916 1.01608 1.21829 0.94231 0.98637 0.93119 1.20176 0.96492 0.92579 1.01082 1.19574 0.88842 0.98265 0.96207 1.21954 1.01952 0.99505 0.96767 1.21950 1.01987 0.93090 1.02626 1.21944 1.01989 0.99581 0.96447 1.20792 0.91776 0.99627 0.93298 1.30451 1.06334 1.19349 1.20647 1.01301 0.73013 0.74292 0.72432 1.93513 1.60450 1.87956 1.55827 1.93489 1.62915 1.56171 1.86971 1.55325 1.18254 1.90470 1.21795 1.18274 0.90896 0.94075 0.79563 0.96739 1.22018 1.00640 0.96193 1.00882 1.21588 1.09056 1.28703 0.98847 0.91650 1.25677 0.95823 0.97302 0.99410 1.70010 1.20724 1.44421 1.20067 0.85496 0.78336 0.78935 0.78493 1.19557 1.21013 1.19585 0.88390 0.87414 0.92515 0.81832 0.81640 0.92972 0.90254 0.94354 0.91052 0.90850 0.91813 0.93973 0.90333 0.91872 0.86107 0.74726 0.93964 0.91768 0.94784 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.83 71.24 0.63 -3.12 16 2 C 0.01 0.18 5.38 -19.86 -0.11 0.07 16 3 C -0.14 -3.17 9.71 22.27 0.22 -2.95 16 4 C -0.06 -1.32 8.98 22.27 0.20 -1.12 16 5 C -0.10 -2.71 4.76 -19.87 -0.09 -2.81 16 6 C -0.03 -0.61 0.85 -52.93 -0.05 -0.66 16 7 C -0.14 -3.46 8.29 71.98 0.60 -2.87 16 8 C -0.14 -2.04 7.13 71.98 0.51 -1.53 16 9 C -0.14 -2.85 8.29 71.98 0.60 -2.26 16 10 C -0.04 -1.20 8.22 22.27 0.18 -1.02 16 11 C -0.68 -23.89 4.97 22.27 0.11 -23.78 16 12 S 2.70 110.20 4.91 -56.49 -0.28 109.92 16 13 O -0.99 -40.34 16.47 -128.00 -2.11 -42.45 16 14 O -1.01 -48.49 16.27 -128.00 -2.08 -50.58 16 15 N -1.10 -45.87 4.34 -172.51 -0.75 -46.62 16 16 C 0.28 13.75 2.91 44.24 0.13 13.88 16 17 H 0.01 0.83 7.46 -2.38 -0.02 0.82 16 18 C -0.14 -6.31 9.20 71.98 0.66 -5.65 16 19 C -0.54 -29.07 8.77 25.60 0.22 -28.84 16 20 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 21 C 0.02 0.98 5.30 84.65 0.45 1.43 16 22 N -0.91 -51.06 11.39 21.45 0.24 -50.82 16 23 Si 0.96 42.61 29.54 68.60 2.03 44.63 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.11 2.09 8.10 -2.39 -0.02 2.07 16 29 H 0.06 1.63 4.89 -2.38 -0.01 1.62 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.17 2.38 5.90 -2.91 -0.02 2.36 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.09 7.39 -2.39 -0.02 1.07 16 35 H 0.07 0.87 7.51 -2.39 -0.02 0.85 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.90 7.51 -2.39 -0.02 0.88 16 38 H 0.04 0.99 7.39 -2.39 -0.02 0.97 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.12 4.41 6.38 -2.91 -0.02 4.39 16 42 H 0.42 15.50 8.37 -96.74 -0.81 14.69 16 43 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.06 3.27 6.25 -2.39 -0.01 3.26 16 45 H 0.03 1.38 6.65 -2.39 -0.02 1.36 16 46 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -68.67 370.79 1.49 -67.19 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.17 Total: 29.93 kcal Atomic # 6 Polarization: -65.48 SS G_CDS: 4.26 Total: -61.21 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -0.50 Total: -97.44 kcal Atomic # 8 Polarization: -88.83 SS G_CDS: -4.19 Total: -93.02 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 110.20 SS G_CDS: -0.28 Total: 109.92 kcal Total: -68.67 1.49 -67.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649701832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.738 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds