Wall clock time and date at job start Tue Mar 31 2020 14:11:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.47192 * 2 1
4 4 H 1.09001 * 109.47166 * 54.81638 * 3 2 1
5 5 C 1.50703 * 109.47095 * 174.81048 * 3 2 1
6 6 O 1.21282 * 120.00078 * 120.44304 * 5 3 2
7 7 N 1.34777 * 120.00214 * 300.44930 * 5 3 2
8 8 C 1.39918 * 120.00419 * 175.05221 * 7 5 3
9 9 C 1.38966 * 120.03254 * 325.66205 * 8 7 5
10 10 C 1.38159 * 120.06454 * 180.02562 * 9 8 7
11 11 C 1.38166 * 120.14013 * 359.69541 * 10 9 8
12 12 C 1.38909 * 120.07083 * 0.55757 * 11 10 9
13 13 O 1.35749 * 120.03247 * 179.74235 * 12 11 10
14 14 C 1.34835 * 116.99580 * 174.84294 * 13 12 11
15 15 H 1.08000 * 119.99998 * 5.59777 * 14 13 12
16 16 C 1.38650 * 119.99602 * 185.59937 * 14 13 12
17 17 N 1.31557 * 120.00623 * 359.97438 * 16 14 13
18 18 Si 1.86808 * 119.99812 * 180.02562 * 16 14 13
19 19 H 1.48497 * 109.46822 * 89.99915 * 18 16 14
20 20 H 1.48497 * 109.46866 * 209.99796 * 18 16 14
21 21 H 1.48497 * 109.46946 * 329.99749 * 18 16 14
22 22 C 1.38708 * 120.04143 * 145.68349 * 8 7 5
23 23 C 1.50693 * 109.47313 * 294.81014 * 3 2 1
24 24 C 1.38236 * 120.00280 * 299.72532 * 23 3 2
25 25 C 1.38237 * 119.99822 * 179.81053 * 24 23 3
26 26 C 1.38233 * 120.00140 * 0.39433 * 25 24 23
27 27 C 1.38237 * 119.99987 * 359.86241 * 26 25 24
28 28 C 1.38234 * 119.99929 * 359.94898 * 27 26 25
29 29 H 1.08996 * 109.47126 * 65.33622 * 1 2 3
30 30 H 1.09001 * 109.47005 * 185.33825 * 1 2 3
31 31 H 1.08998 * 109.46679 * 305.33928 * 1 2 3
32 32 H 1.08997 * 109.46978 * 240.00019 * 2 1 3
33 33 H 1.08996 * 109.47153 * 120.00331 * 2 1 3
34 34 H 0.96999 * 119.99862 * 355.05305 * 7 5 3
35 35 H 1.08000 * 119.96732 * 0.02562 * 9 8 7
36 36 H 1.08007 * 119.92843 * 179.97438 * 10 9 8
37 37 H 1.08009 * 119.96571 * 180.30075 * 11 10 9
38 38 H 0.96991 * 120.00731 * 179.97438 * 17 16 14
39 39 H 1.08004 * 120.06702 * 359.95466 * 22 8 7
40 40 H 1.07995 * 120.00099 * 359.97438 * 24 23 3
41 41 H 1.08001 * 119.99974 * 180.23332 * 25 24 23
42 42 H 1.08000 * 119.99863 * 179.83383 * 26 25 24
43 43 H 1.07997 * 119.99794 * 179.97438 * 27 26 25
44 44 H 1.08005 * 119.99771 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6029 1.9824 0.8399
5 6 3.5416 1.4444 0.1285
6 8 4.2237 1.9498 -0.7376
7 7 4.1265 0.8843 1.2059
8 6 5.5209 0.7934 1.2769
9 6 6.2637 0.5805 0.1218
10 6 7.6406 0.4900 0.1912
11 6 8.2838 0.6171 1.4074
12 6 7.5466 0.8247 2.5663
13 8 8.1790 0.9442 3.7616
14 6 7.4156 1.2506 4.8300
15 1 6.3414 1.3003 4.7297
16 6 8.0098 1.5019 6.0572
17 7 9.3182 1.4410 6.1795
18 14 6.9522 1.9257 7.5376
19 1 6.5796 0.6788 8.2529
20 1 7.7145 2.8125 8.4529
21 1 5.7219 2.6226 7.0838
22 6 6.1634 0.9151 2.5001
23 6 1.6454 2.1148 -1.2896
24 6 2.0893 1.6087 -2.4970
25 6 1.7240 2.2233 -3.6802
26 6 0.9217 3.3486 -3.6555
27 6 0.4822 3.8578 -2.4478
28 6 0.8442 3.2410 -1.2649
29 1 -0.3633 0.4288 -0.9339
30 1 -0.3633 -1.0232 0.0956
31 1 -0.3632 0.5944 0.8383
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8899
34 1 3.5807 0.5443 1.9321
35 1 5.7642 0.4856 -0.8310
36 1 8.2157 0.3241 -0.7078
37 1 9.3606 0.5507 1.4578
38 1 9.7339 1.6172 7.0379
39 1 5.5883 1.0810 3.3992
40 1 2.7192 0.7317 -2.5161
41 1 2.0677 1.8257 -4.6237
42 1 0.6386 3.8303 -4.5798
43 1 -0.1443 4.7373 -2.4286
44 1 0.5012 3.6392 -0.3213
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042786614.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:11:11
Heat of formation + Delta-G solvation = -17.153800 kcal
Electronic energy + Delta-G solvation = -26456.537777 eV
Core-core repulsion = 22725.271029 eV
Total energy + Delta-G solvation = -3731.266748 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.70619 -39.30556 -38.45200 -36.47703 -35.29607 -34.18423 -32.24546 -31.05948
-30.81099 -29.54727 -28.75078 -27.20598 -25.30866 -23.16464 -22.70740 -22.41261
-21.82792 -20.90351 -19.72153 -17.95797 -17.87733 -17.01242 -16.83754 -15.82843
-15.53433 -15.15068 -15.04103 -14.68244 -14.54476 -14.39581 -14.17658 -13.87136
-13.58914 -13.46178 -13.26927 -12.98563 -12.74512 -12.62812 -12.33682 -12.19324
-11.82151 -11.70878 -11.53762 -11.37838 -11.13565 -11.03410 -10.96063 -10.92669
-10.79327 -10.47148 -9.85096 -9.59718 -9.39203 -8.97559 -8.82839 -8.81402
-7.74306 -7.16851 -6.45922 -4.05941 1.22047 1.33264 1.95167 2.36140
2.83942 3.10374 3.11795 3.16182 3.21228 3.74482 3.94708 4.30567
4.48692 4.57321 4.72034 4.82762 4.88520 4.95340 5.02141 5.06875
5.12636 5.22357 5.29097 5.38655 5.43790 5.53694 5.66588 5.69864
5.79443 5.87847 5.92626 5.96731 5.97670 6.06708 6.23837 6.26590
6.34332 6.41275 6.49730 6.62398 6.88502 6.96220 6.98177 7.11428
7.29755 7.41234 7.68405 7.80028 7.98248 8.30898 8.99415 9.69693
10.72147
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.016310 B = 0.002813 C = 0.002601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1716.310582 B = 9951.579309 C =10761.981878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.113 4.113
3 C -0.069 4.069
4 H 0.105 0.895
5 C 0.514 3.486
6 O -0.509 6.509
7 N -0.669 5.669
8 C 0.181 3.819
9 C -0.205 4.205
10 C -0.063 4.063
11 C -0.200 4.200
12 C 0.168 3.832
13 O -0.176 6.176
14 C -0.393 4.393
15 H 0.090 0.910
16 C 0.040 3.960
17 N -0.862 5.862
18 Si 0.940 3.060
19 H -0.273 1.273
20 H -0.277 1.277
21 H -0.268 1.268
22 C -0.256 4.256
23 C -0.061 4.061
24 C -0.084 4.084
25 C -0.122 4.122
26 C -0.122 4.122
27 C -0.124 4.124
28 C -0.112 4.112
29 H 0.058 0.942
30 H 0.058 0.942
31 H 0.057 0.943
32 H 0.072 0.928
33 H 0.073 0.927
34 H 0.406 0.594
35 H 0.117 0.883
36 H 0.115 0.885
37 H 0.118 0.882
38 H 0.270 0.730
39 H 0.130 0.870
40 H 0.119 0.881
41 H 0.120 0.880
42 H 0.118 0.882
43 H 0.120 0.880
44 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.416 -1.026 -13.596 23.725
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.151 4.151
3 C -0.090 4.090
4 H 0.123 0.877
5 C 0.300 3.700
6 O -0.382 6.382
7 N -0.314 5.314
8 C 0.088 3.912
9 C -0.225 4.225
10 C -0.082 4.082
11 C -0.220 4.220
12 C 0.114 3.886
13 O -0.080 6.080
14 C -0.469 4.469
15 H 0.108 0.892
16 C -0.165 4.165
17 N -0.497 5.497
18 Si 0.765 3.235
19 H -0.199 1.199
20 H -0.202 1.202
21 H -0.193 1.193
22 C -0.278 4.278
23 C -0.061 4.061
24 C -0.102 4.102
25 C -0.140 4.140
26 C -0.140 4.140
27 C -0.142 4.142
28 C -0.130 4.130
29 H 0.077 0.923
30 H 0.077 0.923
31 H 0.076 0.924
32 H 0.090 0.910
33 H 0.091 0.909
34 H 0.241 0.759
35 H 0.135 0.865
36 H 0.133 0.867
37 H 0.136 0.864
38 H 0.080 0.920
39 H 0.147 0.853
40 H 0.137 0.863
41 H 0.138 0.862
42 H 0.136 0.864
43 H 0.138 0.862
44 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -18.552 -0.648 -13.983 23.240
hybrid contribution -0.782 0.191 1.224 1.465
sum -19.335 -0.457 -12.758 23.169
Atomic orbital electron populations
1.21761 0.94639 1.01942 1.02327 1.21560 0.96971 0.93310 1.03261
1.20416 0.92368 0.98544 0.97685 0.87666 1.20510 0.89969 0.77671
0.81823 1.90748 1.64865 1.42725 1.39895 1.43501 1.06035 1.60060
1.21778 1.17396 0.81220 0.98350 0.94214 1.20505 0.93838 1.11130
0.97059 1.20528 0.93654 0.97767 0.96274 1.20255 0.99568 1.11642
0.90527 1.19070 0.90099 0.92210 0.87217 1.84011 1.35610 1.76124
1.12205 1.21271 0.90811 1.48950 0.85853 0.89245 1.25275 0.96273
0.96636 0.98268 1.70030 1.08801 1.45344 1.25544 0.85733 0.79048
0.78668 0.80084 1.19886 1.20234 1.19279 1.20819 0.94845 1.15173
0.96965 1.19228 0.97738 0.95736 0.93406 1.20907 0.97672 0.99816
0.91781 1.21106 0.98486 0.96363 0.98053 1.21122 0.98401 0.96604
0.97852 1.21054 1.00697 0.99958 0.92510 1.20997 0.98468 0.95172
0.98342 0.92295 0.92313 0.92430 0.90979 0.90881 0.75927 0.86497
0.86654 0.86386 0.92005 0.85274 0.86338 0.86209 0.86353 0.86224
0.86232
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.05 9.64 37.16 0.36 -0.69 16
2 C -0.11 -0.94 5.25 -26.73 -0.14 -1.08 16
3 C -0.07 -0.71 2.37 -92.93 -0.22 -0.93 16
4 H 0.11 0.91 7.88 -51.93 -0.41 0.50 16
5 C 0.51 7.44 6.76 -10.98 -0.07 7.36 16
6 O -0.51 -9.27 12.84 5.56 0.07 -9.20 16
7 N -0.67 -9.87 5.14 -9.88 -0.05 -9.92 16
8 C 0.18 3.44 6.26 -83.72 -0.52 2.92 16
9 C -0.20 -3.91 8.65 -39.34 -0.34 -4.25 16
10 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16
11 C -0.20 -4.32 9.99 -39.36 -0.39 -4.71 16
12 C 0.17 4.08 6.65 -39.13 -0.26 3.82 16
13 O -0.18 -5.00 9.76 0.04 0.00 -5.00 16
14 C -0.39 -10.85 9.48 30.88 0.29 -10.56 16
15 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16
16 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16
17 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16
18 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16
19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16
21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
22 C -0.26 -5.53 9.08 -39.21 -0.36 -5.89 16
23 C -0.06 -0.68 3.48 -104.63 -0.36 -1.04 16
24 C -0.08 -0.97 7.87 -39.58 -0.31 -1.28 16
25 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16
26 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16
27 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16
28 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16
29 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16
30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 0.64 7.24 -51.93 -0.38 0.26 16
33 H 0.07 0.55 7.51 -51.93 -0.39 0.16 16
34 H 0.41 4.68 8.31 -40.82 -0.34 4.34 16
35 H 0.12 2.17 6.48 -52.49 -0.34 1.83 16
36 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16
37 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16
38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16
39 H 0.13 2.72 5.63 -52.48 -0.30 2.43 16
40 H 0.12 1.39 7.50 -52.49 -0.39 0.99 16
41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16
42 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16
43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16
44 H 0.12 1.01 7.95 -52.48 -0.42 0.59 16
LS Contribution 369.23 15.07 5.56 5.56
Total: -1.00 -33.33 369.23 -8.80 -42.14
By element:
Atomic # 1 Polarization: 14.64 SS G_CDS: -5.72 Total: 8.92 kcal
Atomic # 6 Polarization: -18.90 SS G_CDS: -4.40 Total: -23.30 kcal
Atomic # 7 Polarization: -35.05 SS G_CDS: 0.71 Total: -34.35 kcal
Atomic # 8 Polarization: -14.27 SS G_CDS: 0.07 Total: -14.20 kcal
Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.33 -8.80 -42.14 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042786614.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.983 kcal
(2) G-P(sol) polarization free energy of solvation -33.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds