Wall clock time and date at job start Tue Mar 31 2020 14:11:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.47192 * 2 1
4 4 H 1.09001 * 109.47166 * 54.81638 * 3 2 1
5 5 C 1.50703 * 109.47095 * 174.81048 * 3 2 1
6 6 O 1.21282 * 120.00078 * 120.44304 * 5 3 2
7 7 N 1.34777 * 120.00214 * 300.44930 * 5 3 2
8 8 C 1.39918 * 120.00419 * 175.05221 * 7 5 3
9 9 C 1.38966 * 120.03254 * 325.66205 * 8 7 5
10 10 C 1.38159 * 120.06454 * 180.02562 * 9 8 7
11 11 C 1.38166 * 120.14013 * 359.69541 * 10 9 8
12 12 C 1.38909 * 120.07083 * 0.55757 * 11 10 9
13 13 O 1.35749 * 120.03247 * 179.74235 * 12 11 10
14 14 C 1.34835 * 116.99580 * 174.84294 * 13 12 11
15 15 H 1.08000 * 119.99998 * 5.59777 * 14 13 12
16 16 C 1.38650 * 119.99602 * 185.59937 * 14 13 12
17 17 N 1.31557 * 120.00623 * 359.97438 * 16 14 13
18 18 Si 1.86808 * 119.99812 * 180.02562 * 16 14 13
19 19 H 1.48497 * 109.46822 * 89.99915 * 18 16 14
20 20 H 1.48497 * 109.46866 * 209.99796 * 18 16 14
21 21 H 1.48497 * 109.46946 * 329.99749 * 18 16 14
22 22 C 1.38708 * 120.04143 * 145.68349 * 8 7 5
23 23 C 1.50693 * 109.47313 * 294.81014 * 3 2 1
24 24 C 1.38236 * 120.00280 * 299.72532 * 23 3 2
25 25 C 1.38237 * 119.99822 * 179.81053 * 24 23 3
26 26 C 1.38233 * 120.00140 * 0.39433 * 25 24 23
27 27 C 1.38237 * 119.99987 * 359.86241 * 26 25 24
28 28 C 1.38234 * 119.99929 * 359.94898 * 27 26 25
29 29 H 1.08996 * 109.47126 * 65.33622 * 1 2 3
30 30 H 1.09001 * 109.47005 * 185.33825 * 1 2 3
31 31 H 1.08998 * 109.46679 * 305.33928 * 1 2 3
32 32 H 1.08997 * 109.46978 * 240.00019 * 2 1 3
33 33 H 1.08996 * 109.47153 * 120.00331 * 2 1 3
34 34 H 0.96999 * 119.99862 * 355.05305 * 7 5 3
35 35 H 1.08000 * 119.96732 * 0.02562 * 9 8 7
36 36 H 1.08007 * 119.92843 * 179.97438 * 10 9 8
37 37 H 1.08009 * 119.96571 * 180.30075 * 11 10 9
38 38 H 0.96991 * 120.00731 * 179.97438 * 17 16 14
39 39 H 1.08004 * 120.06702 * 359.95466 * 22 8 7
40 40 H 1.07995 * 120.00099 * 359.97438 * 24 23 3
41 41 H 1.08001 * 119.99974 * 180.23332 * 25 24 23
42 42 H 1.08000 * 119.99863 * 179.83383 * 26 25 24
43 43 H 1.07997 * 119.99794 * 179.97438 * 27 26 25
44 44 H 1.08005 * 119.99771 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6029 1.9824 0.8399
5 6 3.5416 1.4444 0.1285
6 8 4.2237 1.9498 -0.7376
7 7 4.1265 0.8843 1.2059
8 6 5.5209 0.7934 1.2769
9 6 6.2637 0.5805 0.1218
10 6 7.6406 0.4900 0.1912
11 6 8.2838 0.6171 1.4074
12 6 7.5466 0.8247 2.5663
13 8 8.1790 0.9442 3.7616
14 6 7.4156 1.2506 4.8300
15 1 6.3414 1.3003 4.7297
16 6 8.0098 1.5019 6.0572
17 7 9.3182 1.4410 6.1795
18 14 6.9522 1.9257 7.5376
19 1 6.5796 0.6788 8.2529
20 1 7.7145 2.8125 8.4529
21 1 5.7219 2.6226 7.0838
22 6 6.1634 0.9151 2.5001
23 6 1.6454 2.1148 -1.2896
24 6 2.0893 1.6087 -2.4970
25 6 1.7240 2.2233 -3.6802
26 6 0.9217 3.3486 -3.6555
27 6 0.4822 3.8578 -2.4478
28 6 0.8442 3.2410 -1.2649
29 1 -0.3633 0.4288 -0.9339
30 1 -0.3633 -1.0232 0.0956
31 1 -0.3632 0.5944 0.8383
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8899
34 1 3.5807 0.5443 1.9321
35 1 5.7642 0.4856 -0.8310
36 1 8.2157 0.3241 -0.7078
37 1 9.3606 0.5507 1.4578
38 1 9.7339 1.6172 7.0379
39 1 5.5883 1.0810 3.3992
40 1 2.7192 0.7317 -2.5161
41 1 2.0677 1.8257 -4.6237
42 1 0.6386 3.8303 -4.5798
43 1 -0.1443 4.7373 -2.4286
44 1 0.5012 3.6392 -0.3213
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042786614.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:11:10
Heat of formation + Delta-G solvation = -35.988865 kcal
Electronic energy + Delta-G solvation = -26457.354526 eV
Core-core repulsion = 22725.271029 eV
Total energy + Delta-G solvation = -3732.083498 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.87635 -40.68500 -39.73008 -38.10867 -36.16678 -35.57386 -34.22569 -31.79443
-31.52325 -31.08889 -30.37456 -28.20560 -27.25048 -24.01029 -23.85561 -23.51549
-23.14394 -22.11305 -20.91726 -19.72903 -19.36389 -18.17847 -17.84494 -17.14075
-16.86068 -16.51620 -16.27169 -15.97430 -15.78742 -15.64171 -15.37550 -15.23117
-15.12658 -14.59136 -14.31893 -14.18587 -13.93248 -13.59556 -13.46180 -13.34547
-13.22909 -12.93939 -12.72014 -12.64758 -12.45726 -12.40874 -12.12263 -12.03718
-11.72333 -11.61900 -11.43002 -11.25738 -10.83479 -10.69092 -9.74833 -9.60222
-9.36594 -8.88840 -8.46438 -6.15559 0.37140 0.45817 0.56624 0.68197
1.36085 1.44995 1.53687 1.59751 2.03300 2.18234 2.83312 2.94519
3.15179 3.46967 3.49962 3.66459 3.95140 4.04857 4.12286 4.19894
4.24813 4.30731 4.31900 4.43323 4.46441 4.55025 4.62636 4.67980
4.72376 4.77138 4.89553 5.00853 5.06092 5.11106 5.16850 5.19337
5.21666 5.38317 5.41505 5.46857 5.60149 5.65215 5.65927 5.66554
5.71568 6.01576 6.14656 6.16346 6.45172 6.97828 7.11145 7.77190
8.76633
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.016310 B = 0.002813 C = 0.002601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1716.310582 B = 9951.579309 C =10761.981878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.110 4.110
3 C -0.057 4.057
4 H 0.129 0.871
5 C 0.515 3.485
6 O -0.547 6.547
7 N -0.661 5.661
8 C 0.189 3.811
9 C -0.199 4.199
10 C -0.053 4.053
11 C -0.215 4.215
12 C 0.135 3.865
13 O -0.226 6.226
14 C -0.414 4.414
15 H 0.104 0.896
16 C -0.022 4.022
17 N -0.920 5.920
18 Si 1.018 2.982
19 H -0.261 1.261
20 H -0.274 1.274
21 H -0.251 1.251
22 C -0.260 4.260
23 C -0.075 4.075
24 C -0.104 4.104
25 C -0.135 4.135
26 C -0.127 4.127
27 C -0.129 4.129
28 C -0.121 4.121
29 H 0.050 0.950
30 H 0.067 0.933
31 H 0.068 0.932
32 H 0.063 0.937
33 H 0.083 0.917
34 H 0.423 0.577
35 H 0.129 0.871
36 H 0.152 0.848
37 H 0.118 0.882
38 H 0.273 0.727
39 H 0.131 0.869
40 H 0.108 0.892
41 H 0.132 0.868
42 H 0.140 0.860
43 H 0.143 0.857
44 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.753 -0.601 -14.301 26.881
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.148 4.148
3 C -0.078 4.078
4 H 0.146 0.854
5 C 0.304 3.696
6 O -0.423 6.423
7 N -0.307 5.307
8 C 0.094 3.906
9 C -0.220 4.220
10 C -0.071 4.071
11 C -0.235 4.235
12 C 0.083 3.917
13 O -0.132 6.132
14 C -0.490 4.490
15 H 0.121 0.879
16 C -0.220 4.220
17 N -0.558 5.558
18 Si 0.838 3.162
19 H -0.186 1.186
20 H -0.199 1.199
21 H -0.175 1.175
22 C -0.282 4.282
23 C -0.075 4.075
24 C -0.122 4.122
25 C -0.153 4.153
26 C -0.145 4.145
27 C -0.147 4.147
28 C -0.139 4.139
29 H 0.069 0.931
30 H 0.086 0.914
31 H 0.087 0.913
32 H 0.081 0.919
33 H 0.102 0.898
34 H 0.261 0.739
35 H 0.146 0.854
36 H 0.170 0.830
37 H 0.136 0.864
38 H 0.082 0.918
39 H 0.148 0.852
40 H 0.126 0.874
41 H 0.150 0.850
42 H 0.158 0.842
43 H 0.160 0.840
44 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -21.949 -0.246 -14.728 26.434
hybrid contribution 0.166 0.038 1.101 1.114
sum -21.783 -0.208 -13.627 25.695
Atomic orbital electron populations
1.21717 0.93314 1.02705 1.02398 1.21572 0.98015 0.91826 1.03377
1.20440 0.88850 1.00194 0.98354 0.85366 1.21295 0.91626 0.76140
0.80581 1.90729 1.66144 1.44285 1.41109 1.43502 1.04372 1.59990
1.22814 1.17436 0.83377 0.96608 0.93140 1.20818 0.94089 1.09514
0.97529 1.20908 0.93958 0.95762 0.96471 1.20476 0.99856 1.12285
0.90869 1.19592 0.91640 0.93522 0.86918 1.83982 1.37127 1.78554
1.13586 1.21821 0.91662 1.49161 0.86324 0.87879 1.26603 0.97746
0.96166 1.01476 1.70183 1.11151 1.47900 1.26614 0.84590 0.77399
0.78852 0.75400 1.18572 1.19905 1.17495 1.20854 0.93976 1.15246
0.98077 1.19369 0.98384 0.96396 0.93399 1.20988 0.98368 1.00095
0.92722 1.21356 0.98778 0.96831 0.98299 1.21451 0.97796 0.96240
0.99021 1.21412 1.00545 1.00503 0.92269 1.21290 0.98273 0.94804
0.99548 0.93052 0.91426 0.91311 0.91852 0.89818 0.73906 0.85357
0.83009 0.86374 0.91832 0.85185 0.87359 0.85023 0.84178 0.83953
0.84443
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.63 9.64 71.98 0.69 -0.93 16
2 C -0.11 -1.57 5.25 30.59 0.16 -1.41 16
3 C -0.06 -1.05 2.37 -12.29 -0.03 -1.08 16
4 H 0.13 1.78 7.88 -2.39 -0.02 1.76 16
5 C 0.51 13.95 6.76 87.66 0.59 14.54 16
6 O -0.55 -19.23 12.84 -3.04 -0.04 -19.27 16
7 N -0.66 -18.21 5.14 -303.56 -1.56 -19.77 16
8 C 0.19 6.95 6.26 38.14 0.24 7.19 16
9 C -0.20 -7.30 8.65 22.43 0.19 -7.11 16
10 C -0.05 -1.92 10.03 22.23 0.22 -1.70 16
11 C -0.22 -9.43 9.99 22.41 0.22 -9.20 16
12 C 0.13 6.73 6.65 22.56 0.15 6.88 16
13 O -0.23 -13.51 9.76 -22.79 -0.22 -13.73 16
14 C -0.41 -23.63 9.48 67.92 0.64 -22.99 16
15 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16
16 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16
17 N -0.92 -56.09 13.67 21.61 0.30 -55.80 16
18 Si 1.02 41.81 29.55 68.60 2.03 43.84 16
19 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16
20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16
21 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16
22 C -0.26 -11.25 9.08 22.51 0.20 -11.05 16
23 C -0.08 -1.55 3.48 -19.87 -0.07 -1.62 16
24 C -0.10 -2.31 7.87 22.27 0.18 -2.14 16
25 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16
26 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16
27 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16
28 C -0.12 -2.19 9.67 22.27 0.22 -1.98 16
29 H 0.05 0.67 7.56 -2.39 -0.02 0.65 16
30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16
31 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16
32 H 0.06 1.03 7.24 -2.39 -0.02 1.01 16
33 H 0.08 1.02 7.51 -2.39 -0.02 1.00 16
34 H 0.42 8.71 8.31 -92.71 -0.77 7.94 16
35 H 0.13 4.51 6.48 -2.91 -0.02 4.49 16
36 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16
37 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16
38 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16
39 H 0.13 5.50 5.63 -2.91 -0.02 5.48 16
40 H 0.11 2.53 7.50 -2.91 -0.02 2.51 16
41 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16
42 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16
43 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16
44 H 0.14 1.89 7.95 -2.91 -0.02 1.86 16
Total: -1.00 -75.84 369.23 5.51 -70.33
By element:
Atomic # 1 Polarization: 33.80 SS G_CDS: 0.26 Total: 34.05 kcal
Atomic # 6 Polarization: -44.41 SS G_CDS: 4.75 Total: -39.66 kcal
Atomic # 7 Polarization: -74.30 SS G_CDS: -1.27 Total: -75.56 kcal
Atomic # 8 Polarization: -32.74 SS G_CDS: -0.26 Total: -33.00 kcal
Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal
Total: -75.84 5.51 -70.33 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042786614.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.344 kcal
(2) G-P(sol) polarization free energy of solvation -75.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.989 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds