Wall clock time and date at job start Tue Mar 31 2020 16:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47446 * 2 1 4 4 O 1.21293 * 120.00120 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00249 * 180.02562 * 3 2 1 6 6 C 1.39922 * 120.00051 * 183.28911 * 5 3 2 7 7 C 1.38892 * 120.07133 * 322.38731 * 6 5 3 8 8 C 1.38086 * 119.92945 * 180.02562 * 7 6 5 9 9 C 1.38303 * 120.07109 * 0.02562 * 8 7 6 10 10 C 1.38258 * 120.14300 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.96538 * 180.28185 * 10 9 8 12 12 O 1.42903 * 109.46724 * 269.72365 * 11 10 9 13 13 C 1.35681 * 117.00021 * 179.97438 * 12 11 10 14 14 C 1.39314 * 119.81190 * 359.72789 * 13 12 11 15 15 C 1.36436 * 120.18188 * 179.76230 * 14 13 12 16 16 C 1.40834 * 119.80982 * 0.50812 * 15 14 13 17 17 C 1.41219 * 120.17821 * 179.72415 * 16 15 14 18 18 H 1.08004 * 120.00150 * 158.14791 * 17 16 15 19 19 C 1.39887 * 120.00270 * 338.14104 * 17 16 15 20 20 N 1.30889 * 119.99734 * 327.88560 * 19 17 16 21 21 Si 1.86801 * 120.00264 * 147.88442 * 19 17 16 22 22 H 1.48495 * 109.47087 * 94.98233 * 21 19 17 23 23 H 1.48501 * 109.46826 * 214.98278 * 21 19 17 24 24 H 1.48499 * 109.47021 * 334.98315 * 21 19 17 25 25 C 1.40835 * 119.64395 * 359.74265 * 16 15 14 26 26 C 1.36437 * 119.81074 * 0.02562 * 25 16 15 27 27 C 1.38134 * 120.06987 * 0.02562 * 10 9 8 28 28 H 1.08998 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47293 * 300.01043 * 1 2 3 30 30 H 1.09005 * 109.46604 * 60.00306 * 1 2 3 31 31 H 1.08999 * 109.47558 * 239.99437 * 2 1 3 32 32 H 1.09005 * 109.46604 * 119.99694 * 2 1 3 33 33 H 0.96999 * 119.99985 * 3.28639 * 5 3 2 34 34 H 1.07999 * 120.03705 * 0.04695 * 7 6 5 35 35 H 1.08005 * 119.96675 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.92847 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.47152 * 29.72230 * 11 10 9 38 38 H 1.08997 * 109.46922 * 149.72709 * 11 10 9 39 39 H 1.07999 * 119.91061 * 0.02562 * 14 13 12 40 40 H 1.07999 * 120.09750 * 180.24951 * 15 14 13 41 41 H 0.96996 * 119.99936 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.09675 * 179.97438 * 25 16 15 43 43 H 1.08000 * 119.91223 * 179.97438 * 26 25 16 44 44 H 1.08001 * 120.03684 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8243 2.9842 0.0690 7 6 3.1510 3.9975 -0.6011 8 6 3.6146 5.2963 -0.5309 9 6 4.7484 5.5886 0.2052 10 6 5.4210 4.5823 0.8734 11 6 6.6523 4.9063 1.6794 12 8 7.8092 4.7930 0.8481 13 6 9.0096 5.0542 1.4241 14 6 9.0685 5.4193 2.7673 15 6 10.2719 5.6790 3.3553 16 6 11.4556 5.5875 2.5977 17 6 12.7049 5.8603 3.1970 18 1 13.6108 5.4666 2.7603 19 6 12.7691 6.6406 4.3563 20 7 11.8972 7.5973 4.5503 21 14 14.0992 6.3172 5.6274 22 1 15.2504 7.2220 5.3804 23 1 13.5560 6.5671 6.9867 24 1 14.5485 4.9055 5.5256 25 6 11.3867 5.2229 1.2391 26 6 10.1757 4.9619 0.6675 27 6 4.9624 3.2810 0.8072 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9875 0.9311 -0.0491 34 1 2.2656 3.7699 -1.1761 35 1 3.0912 6.0848 -1.0513 36 1 5.1092 6.6052 0.2582 37 1 6.5785 5.9241 2.0624 38 1 6.7345 4.2093 2.5133 39 1 8.1595 5.4928 3.3457 40 1 10.3164 5.9580 4.3977 41 1 11.9414 8.1381 5.3543 42 1 12.2898 5.1510 0.6512 43 1 10.1209 4.6826 -0.3743 44 1 5.4884 2.4952 1.3290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046346869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:44 Heat of formation + Delta-G solvation = -36.040222 kcal Electronic energy + Delta-G solvation = -25323.255654 eV Core-core repulsion = 21591.169929 eV Total energy + Delta-G solvation = -3732.085725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.76753 -39.18449 -38.34473 -36.37540 -35.02817 -33.47683 -33.23904 -31.77330 -29.88762 -29.64207 -29.13006 -26.32688 -25.16421 -24.61096 -22.47540 -22.05898 -21.13374 -20.57823 -19.93742 -17.86355 -17.37801 -17.13579 -16.96405 -16.32603 -16.08264 -15.41121 -15.29060 -14.79599 -14.43030 -14.25138 -13.96093 -13.82126 -13.59835 -13.24043 -12.82800 -12.80621 -12.66067 -12.33380 -12.18214 -12.07822 -11.88685 -11.64522 -11.58981 -11.40968 -11.16620 -11.05226 -11.03089 -10.59328 -10.44157 -10.06649 -9.95468 -9.86701 -9.39989 -8.94189 -8.83559 -8.27953 -7.66659 -7.14558 -6.84198 -4.22281 1.18249 1.29036 2.28876 2.75569 2.76105 2.94464 3.06196 3.08977 3.23105 3.62653 3.91549 4.26902 4.35029 4.50320 4.61593 4.65024 4.83239 4.97359 5.07638 5.13408 5.31173 5.33388 5.38088 5.45930 5.50998 5.61974 5.70526 5.71969 5.82420 5.92362 6.11034 6.19651 6.24505 6.26487 6.44470 6.61987 6.70529 6.89215 6.93907 7.03262 7.08969 7.21123 7.38748 7.54397 7.81419 7.87116 7.97523 8.13090 8.42595 8.62909 8.85650 8.98526 10.07980 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.001947 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.709567 B =14377.764337 C =14680.772844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.509 3.491 4 O -0.523 6.523 5 N -0.675 5.675 6 C 0.133 3.867 7 C -0.114 4.114 8 C -0.107 4.107 9 C -0.108 4.108 10 C -0.064 4.064 11 C 0.108 3.892 12 O -0.322 6.322 13 C -0.020 4.020 14 C -0.165 4.165 15 C -0.150 4.150 16 C 0.093 3.907 17 C -0.472 4.472 18 H 0.080 0.920 19 C 0.087 3.913 20 N -0.776 5.776 21 Si 0.894 3.106 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.258 1.258 25 C -0.202 4.202 26 C -0.105 4.105 27 C -0.120 4.120 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.411 0.589 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.282 0.718 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 -11.426 -6.061 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.398 6.398 5 N -0.320 5.320 6 C 0.040 3.960 7 C -0.134 4.134 8 C -0.126 4.126 9 C -0.126 4.126 10 C -0.064 4.064 11 C 0.032 3.968 12 O -0.239 6.239 13 C -0.063 4.063 14 C -0.184 4.184 15 C -0.169 4.169 16 C 0.091 3.909 17 C -0.500 4.500 18 H 0.098 0.902 19 C -0.133 4.133 20 N -0.400 5.400 21 Si 0.718 3.282 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.182 1.182 25 C -0.222 4.222 26 C -0.123 4.123 27 C -0.140 4.140 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.247 0.753 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.160 -10.666 -6.093 21.925 hybrid contribution 0.948 -0.288 0.954 1.375 sum -17.212 -10.954 -5.139 21.040 Atomic orbital electron populations 1.21543 0.92696 1.01818 1.03512 1.21646 0.98931 0.92992 1.04719 1.21009 0.81595 0.92345 0.75298 1.90723 1.55046 1.46364 1.47622 1.43558 1.07873 1.07079 1.73526 1.17639 0.95804 0.84428 0.98173 1.21152 1.00602 0.92410 0.99235 1.21028 0.96286 0.96173 0.99120 1.21140 0.95231 0.99534 0.96743 1.19479 0.95639 0.92837 0.98477 1.21239 0.82665 1.00919 0.91969 1.85875 1.12391 1.87271 1.38331 1.18494 0.83662 1.11465 0.92703 1.20551 0.97952 1.06139 0.93766 1.20666 0.91494 1.05412 0.99363 1.17539 0.93124 0.89807 0.90417 1.19401 0.94047 1.28482 1.08104 0.90184 1.25889 0.96424 0.92500 0.98496 1.69956 1.33704 1.11200 1.25161 0.86541 0.81310 0.80466 0.79913 1.19541 1.19997 1.18208 1.20524 0.95137 1.11438 0.95102 1.19611 0.90587 1.04377 0.97766 1.20828 0.97002 0.96752 0.99396 0.91852 0.91850 0.91890 0.88576 0.88529 0.75300 0.84941 0.85561 0.85545 0.92011 0.92311 0.88792 0.87460 0.90753 0.88246 0.88582 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.14 -0.77 6.42 -27.88 -0.18 -0.95 16 3 C 0.51 4.84 7.65 -10.99 -0.08 4.76 16 4 O -0.52 -6.95 13.62 5.55 0.08 -6.88 16 5 N -0.67 -6.10 5.33 -9.86 -0.05 -6.15 16 6 C 0.13 1.62 6.24 -83.69 -0.52 1.09 16 7 C -0.11 -1.45 8.68 -39.40 -0.34 -1.79 16 8 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 9 C -0.11 -1.45 9.69 -39.55 -0.38 -1.83 16 10 C -0.06 -0.92 5.51 -104.65 -0.58 -1.50 16 11 C 0.11 1.78 4.85 36.01 0.17 1.96 16 12 O -0.32 -6.60 10.11 -18.74 -0.19 -6.79 16 13 C -0.02 -0.47 6.71 -38.78 -0.26 -0.73 16 14 C -0.17 -3.86 8.96 -39.83 -0.36 -4.21 16 15 C -0.15 -3.86 8.74 -39.25 -0.34 -4.20 16 16 C 0.09 2.48 5.57 -106.80 -0.60 1.89 16 17 C -0.47 -12.44 8.94 -37.83 -0.34 -12.78 16 18 H 0.08 2.03 8.01 -52.48 -0.42 1.61 16 19 C 0.09 2.17 4.78 -17.34 -0.08 2.09 16 20 N -0.78 -19.88 11.75 55.54 0.65 -19.23 16 21 Si 0.89 18.27 29.66 -169.99 -5.04 13.23 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.20 -4.99 9.74 -39.25 -0.38 -5.37 16 26 C -0.10 -2.44 9.92 -39.83 -0.40 -2.83 16 27 C -0.12 -1.55 9.62 -39.39 -0.38 -1.93 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 2.41 8.83 -40.82 -0.36 2.05 16 34 H 0.13 1.69 6.46 -52.49 -0.34 1.35 16 35 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.06 1.00 7.57 -51.93 -0.39 0.61 16 38 H 0.06 0.93 7.60 -51.93 -0.39 0.53 16 39 H 0.09 1.94 6.27 -52.49 -0.33 1.61 16 40 H 0.11 2.81 6.50 -52.49 -0.34 2.47 16 41 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 42 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 44 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -31.15 373.54 -9.96 -41.12 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.94 Total: 7.62 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -5.10 Total: -28.55 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.60 Total: -25.38 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.11 Total: -13.67 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.04 Total: 13.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.15 -9.96 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046346869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.078 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds