Wall clock time and date at job start Tue Mar 31 2020 16:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46919 * 2 1 4 4 O 1.42897 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.35903 * 116.99652 * 180.02562 * 4 3 2 6 6 C 1.38804 * 120.02027 * 359.72519 * 5 4 3 7 7 C 1.38178 * 120.08703 * 179.74673 * 6 5 4 8 8 C 1.38159 * 120.12803 * 0.50610 * 7 6 5 9 9 C 1.38912 * 120.03379 * 359.76809 * 8 7 6 10 10 N 1.39846 * 120.04056 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99811 * 213.62501 * 10 9 8 12 12 O 1.21564 * 120.00218 * 5.14943 * 11 10 9 13 13 C 1.47862 * 119.99961 * 185.13935 * 11 10 9 14 14 C 1.39926 * 120.02326 * 359.73389 * 13 11 10 15 15 C 1.38331 * 120.35231 * 179.69070 * 14 13 11 16 16 C 1.37757 * 120.41098 * 0.60616 * 15 14 13 17 17 C 1.40745 * 120.04613 * 359.67301 * 16 15 14 18 18 C 1.41430 * 120.18001 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99815 * 331.76296 * 18 17 16 20 20 C 1.39940 * 120.00065 * 151.76085 * 18 17 16 21 21 N 1.30826 * 120.00070 * 348.99897 * 20 18 17 22 22 Si 1.86804 * 119.99917 * 168.99355 * 20 18 17 23 23 H 1.48503 * 109.46845 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.47216 * 120.00278 * 22 20 18 25 25 H 1.48505 * 109.46973 * 240.00370 * 22 20 18 26 26 C 1.39011 * 120.02681 * 180.02562 * 13 11 10 27 27 C 1.38583 * 120.01481 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47378 * 300.00107 * 1 2 3 29 29 H 1.08994 * 109.47324 * 60.00378 * 1 2 3 30 30 H 1.09006 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47036 * 240.00198 * 2 1 3 32 32 H 1.08998 * 109.47062 * 120.00061 * 2 1 3 33 33 H 1.08998 * 109.47183 * 59.99773 * 3 2 1 34 34 H 1.08998 * 109.47303 * 299.99913 * 3 2 1 35 35 H 1.07999 * 119.96112 * 359.97221 * 6 5 4 36 36 H 1.08001 * 119.93978 * 180.23364 * 7 6 5 37 37 H 1.07995 * 119.98798 * 179.75010 * 8 7 6 38 38 H 0.97002 * 120.00531 * 33.63677 * 10 9 8 39 39 H 1.07997 * 119.82713 * 359.97438 * 14 13 11 40 40 H 1.08005 * 119.79125 * 180.28121 * 15 14 13 41 41 H 1.08000 * 119.97235 * 179.69730 * 16 15 14 42 42 H 0.97003 * 119.99858 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.20084 * 359.97438 * 26 13 11 44 44 H 1.07997 * 120.06430 * 359.97068 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0858 2.6535 -0.0001 6 6 3.3302 3.8178 -0.0049 7 6 3.9560 5.0498 0.0009 8 6 5.3354 5.1269 0.0008 9 6 6.0967 3.9650 -0.0002 10 7 7.4930 4.0429 0.0003 11 6 8.2201 3.1107 -0.6468 12 8 7.6629 2.2565 -1.3083 13 6 9.6956 3.1271 -0.5523 14 6 10.3378 4.1136 0.2043 15 6 11.7175 4.1316 0.3026 16 6 12.4757 3.1866 -0.3530 17 6 11.8478 2.1900 -1.1234 18 6 12.6234 1.2181 -1.7972 19 1 13.6275 1.4551 -2.1167 20 6 12.0898 -0.0507 -2.0499 21 7 10.9682 -0.4135 -1.4827 22 14 12.9791 -1.2263 -3.1974 23 1 14.2163 -0.5809 -3.7055 24 1 13.3347 -2.4646 -2.4590 25 1 12.0935 -1.5680 -4.3395 26 6 10.4462 2.1662 -1.2200 27 6 5.4697 2.7265 -0.0012 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 2.2517 3.7609 -0.0094 36 1 3.3656 5.9542 0.0010 37 1 5.8221 6.0910 0.0012 38 1 7.9382 4.7677 0.4665 39 1 9.7530 4.8622 0.7180 40 1 12.2035 4.8945 0.8927 41 1 13.5526 3.2102 -0.2753 42 1 10.5985 -1.2931 -1.6576 43 1 9.9549 1.4055 -1.8086 44 1 6.0592 1.8216 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049700238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:13 Heat of formation + Delta-G solvation = -38.256703 kcal Electronic energy + Delta-G solvation = -25931.843701 eV Core-core repulsion = 22199.661863 eV Total energy + Delta-G solvation = -3732.181839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.44769 -39.38416 -37.66124 -36.83111 -34.45158 -33.94348 -33.64333 -30.75071 -30.07936 -29.50366 -28.79232 -26.69422 -25.37350 -23.72804 -22.47631 -22.11910 -21.17347 -20.84650 -19.57142 -18.44289 -17.77004 -16.40227 -16.37717 -16.13315 -15.69584 -15.65079 -15.08312 -14.71403 -14.56401 -14.24693 -13.99707 -13.69300 -13.45387 -13.19410 -12.87108 -12.74328 -12.58421 -12.55906 -12.38506 -11.78379 -11.71813 -11.60718 -11.48416 -11.19922 -11.13153 -10.95924 -10.81351 -10.76350 -10.52225 -10.05555 -9.98918 -9.75110 -9.30393 -9.13810 -8.24580 -7.94606 -7.67158 -7.53931 -6.77741 -4.46956 1.35194 1.53749 2.14199 2.76925 3.04693 3.07580 3.10761 3.12436 3.55000 3.64907 3.91074 3.99616 4.61731 4.62748 4.63392 4.88221 4.94569 5.02857 5.14121 5.17313 5.27599 5.34722 5.46626 5.47575 5.53604 5.64724 5.66935 5.79709 5.90989 5.97942 6.05886 6.19195 6.34984 6.37913 6.51112 6.54811 6.66446 6.90752 6.94996 7.07616 7.18334 7.31449 7.50760 7.61527 7.65845 7.83575 7.96351 8.12659 8.45818 8.71723 8.77749 8.79802 10.16053 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.002908 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.900640 B = 9627.585110 C =11628.228358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.060 3.940 4 O -0.313 6.313 5 C 0.149 3.851 6 C -0.235 4.235 7 C -0.062 4.062 8 C -0.191 4.191 9 C 0.202 3.798 10 N -0.678 5.678 11 C 0.563 3.437 12 O -0.519 6.519 13 C -0.132 4.132 14 C -0.214 4.214 15 C -0.099 4.099 16 C -0.205 4.205 17 C 0.097 3.903 18 C -0.459 4.459 19 H 0.081 0.919 20 C 0.070 3.930 21 N -0.790 5.790 22 Si 0.913 3.087 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.271 1.271 26 C -0.083 4.083 27 C -0.158 4.158 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.412 0.588 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.284 0.716 43 H 0.138 0.862 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.168 6.011 3.983 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.016 4.016 4 O -0.226 6.226 5 C 0.103 3.897 6 C -0.255 4.255 7 C -0.081 4.081 8 C -0.212 4.212 9 C 0.106 3.894 10 N -0.324 5.324 11 C 0.356 3.644 12 O -0.394 6.394 13 C -0.135 4.135 14 C -0.234 4.234 15 C -0.117 4.117 16 C -0.225 4.225 17 C 0.094 3.906 18 C -0.488 4.488 19 H 0.100 0.900 20 C -0.148 4.148 21 N -0.415 5.415 22 Si 0.738 3.262 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.103 4.103 27 C -0.179 4.179 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.250 0.750 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.156 0.844 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.554 4.949 3.518 17.633 hybrid contribution 0.386 0.012 -0.137 0.410 sum -16.168 4.961 3.381 17.247 Atomic orbital electron populations 1.21683 0.94372 1.02451 1.02071 1.21497 0.95849 0.95032 1.03967 1.22838 0.78826 0.98665 1.01229 1.86090 1.20918 1.27091 1.88536 1.18709 0.91668 0.83970 0.95348 1.21101 0.99646 0.92365 1.12391 1.20615 0.93696 0.96843 0.96965 1.20796 0.93932 0.96975 1.09464 1.17450 0.83275 0.92909 0.95718 1.43691 1.03667 1.30686 1.54383 1.19055 0.88359 0.79740 0.77296 1.90744 1.72876 1.36370 1.39425 1.19381 0.89370 1.00165 1.04629 1.20362 0.94485 1.01137 1.07427 1.20448 0.93407 0.98236 0.99633 1.21174 0.98128 1.00351 1.02845 1.17626 0.91653 0.91461 0.89826 1.19620 1.01013 0.95783 1.32372 0.90042 1.25966 0.94754 0.99295 0.94796 1.69753 1.17229 1.20546 1.34002 0.86170 0.80235 0.79622 0.80191 1.18416 1.19894 1.19609 1.21739 0.93840 0.96470 0.98213 1.20400 0.91600 0.98592 1.07304 0.92457 0.92415 0.91775 0.90671 0.90755 0.92164 0.92139 0.85850 0.85700 0.85669 0.75049 0.89133 0.88696 0.88430 0.90491 0.84424 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -1.11 6.30 -26.73 -0.17 -1.28 16 3 C 0.06 0.62 4.74 37.16 0.18 0.79 16 4 O -0.31 -4.68 10.13 -19.44 -0.20 -4.88 16 5 C 0.15 2.32 6.68 -39.24 -0.26 2.06 16 6 C -0.24 -2.97 9.04 -39.39 -0.36 -3.33 16 7 C -0.06 -0.73 10.03 -39.63 -0.40 -1.13 16 8 C -0.19 -2.53 9.96 -39.36 -0.39 -2.92 16 9 C 0.20 3.36 6.27 -83.74 -0.53 2.83 16 10 N -0.68 -11.72 5.28 -10.72 -0.06 -11.78 16 11 C 0.56 12.33 7.51 -12.32 -0.09 12.23 16 12 O -0.52 -12.95 14.03 5.31 0.07 -12.88 16 13 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 14 C -0.21 -4.38 9.55 -38.92 -0.37 -4.75 16 15 C -0.10 -2.05 10.01 -39.72 -0.40 -2.45 16 16 C -0.21 -4.77 9.78 -38.81 -0.38 -5.15 16 17 C 0.10 2.53 5.55 -106.88 -0.59 1.93 16 18 C -0.46 -11.92 9.06 -37.73 -0.34 -12.26 16 19 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 20 C 0.07 1.76 5.25 -17.34 -0.09 1.67 16 21 N -0.79 -20.89 10.82 55.55 0.60 -20.28 16 22 Si 0.91 18.78 29.57 -169.99 -5.03 13.75 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.08 -2.17 8.21 -38.44 -0.32 -2.49 16 27 C -0.16 -2.86 8.59 -39.24 -0.34 -3.19 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 34 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 35 H 0.12 1.22 6.29 -52.49 -0.33 0.89 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.41 5.87 6.85 -40.82 -0.28 5.59 16 39 H 0.09 1.50 6.39 -52.49 -0.34 1.16 16 40 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 43 H 0.14 3.94 5.77 -52.48 -0.30 3.63 16 44 H 0.14 3.03 6.43 -52.49 -0.34 2.69 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -30.21 369.62 -9.86 -40.07 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.73 Total: 12.12 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -5.09 Total: -21.69 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.54 Total: -32.06 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.12 Total: -17.76 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.21 -9.86 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049700238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.815 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds