Wall clock time and date at job start Tue Mar 31 2020 16:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46919 * 2 1 4 4 O 1.42897 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.35903 * 116.99652 * 180.02562 * 4 3 2 6 6 C 1.38804 * 120.02027 * 359.72519 * 5 4 3 7 7 C 1.38178 * 120.08703 * 179.74673 * 6 5 4 8 8 C 1.38159 * 120.12803 * 0.50610 * 7 6 5 9 9 C 1.38912 * 120.03379 * 359.76809 * 8 7 6 10 10 N 1.39846 * 120.04056 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99811 * 213.62501 * 10 9 8 12 12 O 1.21564 * 120.00218 * 5.14943 * 11 10 9 13 13 C 1.47862 * 119.99961 * 185.13935 * 11 10 9 14 14 C 1.39926 * 120.02326 * 359.73389 * 13 11 10 15 15 C 1.38331 * 120.35231 * 179.69070 * 14 13 11 16 16 C 1.37757 * 120.41098 * 0.60616 * 15 14 13 17 17 C 1.40745 * 120.04613 * 359.67301 * 16 15 14 18 18 C 1.41430 * 120.18001 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99815 * 331.76296 * 18 17 16 20 20 C 1.39940 * 120.00065 * 151.76085 * 18 17 16 21 21 N 1.30826 * 120.00070 * 348.99897 * 20 18 17 22 22 Si 1.86804 * 119.99917 * 168.99355 * 20 18 17 23 23 H 1.48503 * 109.46845 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.47216 * 120.00278 * 22 20 18 25 25 H 1.48505 * 109.46973 * 240.00370 * 22 20 18 26 26 C 1.39011 * 120.02681 * 180.02562 * 13 11 10 27 27 C 1.38583 * 120.01481 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47378 * 300.00107 * 1 2 3 29 29 H 1.08994 * 109.47324 * 60.00378 * 1 2 3 30 30 H 1.09006 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47036 * 240.00198 * 2 1 3 32 32 H 1.08998 * 109.47062 * 120.00061 * 2 1 3 33 33 H 1.08998 * 109.47183 * 59.99773 * 3 2 1 34 34 H 1.08998 * 109.47303 * 299.99913 * 3 2 1 35 35 H 1.07999 * 119.96112 * 359.97221 * 6 5 4 36 36 H 1.08001 * 119.93978 * 180.23364 * 7 6 5 37 37 H 1.07995 * 119.98798 * 179.75010 * 8 7 6 38 38 H 0.97002 * 120.00531 * 33.63677 * 10 9 8 39 39 H 1.07997 * 119.82713 * 359.97438 * 14 13 11 40 40 H 1.08005 * 119.79125 * 180.28121 * 15 14 13 41 41 H 1.08000 * 119.97235 * 179.69730 * 16 15 14 42 42 H 0.97003 * 119.99858 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.20084 * 359.97438 * 26 13 11 44 44 H 1.07997 * 120.06430 * 359.97068 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0858 2.6535 -0.0001 6 6 3.3302 3.8178 -0.0049 7 6 3.9560 5.0498 0.0009 8 6 5.3354 5.1269 0.0008 9 6 6.0967 3.9650 -0.0002 10 7 7.4930 4.0429 0.0003 11 6 8.2201 3.1107 -0.6468 12 8 7.6629 2.2565 -1.3083 13 6 9.6956 3.1271 -0.5523 14 6 10.3378 4.1136 0.2043 15 6 11.7175 4.1316 0.3026 16 6 12.4757 3.1866 -0.3530 17 6 11.8478 2.1900 -1.1234 18 6 12.6234 1.2181 -1.7972 19 1 13.6275 1.4551 -2.1167 20 6 12.0898 -0.0507 -2.0499 21 7 10.9682 -0.4135 -1.4827 22 14 12.9791 -1.2263 -3.1974 23 1 14.2163 -0.5809 -3.7055 24 1 13.3347 -2.4646 -2.4590 25 1 12.0935 -1.5680 -4.3395 26 6 10.4462 2.1662 -1.2200 27 6 5.4697 2.7265 -0.0012 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 2.2517 3.7609 -0.0094 36 1 3.3656 5.9542 0.0010 37 1 5.8221 6.0910 0.0012 38 1 7.9382 4.7677 0.4665 39 1 9.7530 4.8622 0.7180 40 1 12.2035 4.8945 0.8927 41 1 13.5526 3.2102 -0.2753 42 1 10.5985 -1.2931 -1.6576 43 1 9.9549 1.4055 -1.8086 44 1 6.0592 1.8216 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049700238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:12 Heat of formation + Delta-G solvation = -55.165194 kcal Electronic energy + Delta-G solvation = -25932.576909 eV Core-core repulsion = 22199.661863 eV Total energy + Delta-G solvation = -3732.915046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.78270 -40.72405 -39.16729 -38.31542 -35.86552 -35.45320 -34.75780 -32.36609 -31.39035 -31.21480 -30.08830 -27.48102 -27.22030 -25.20357 -23.70156 -23.17362 -22.78780 -22.07666 -21.16107 -19.77783 -19.38817 -17.96803 -17.34908 -17.27475 -17.07669 -16.96839 -16.65930 -16.42197 -15.93868 -15.59531 -15.13384 -15.07827 -14.73858 -14.63194 -14.41641 -14.29243 -13.77378 -13.61668 -13.46243 -13.06660 -12.98079 -12.83119 -12.69285 -12.59051 -12.49283 -12.36097 -12.20135 -11.94972 -11.79234 -11.63886 -11.53518 -11.25463 -11.15411 -10.83419 -9.62116 -9.42646 -9.38942 -9.03677 -8.63502 -6.42960 0.03568 0.43813 0.50527 0.97755 1.35249 1.44248 1.51419 1.90184 2.00622 2.18301 2.30506 2.72994 2.84333 3.64910 3.78753 3.89313 3.91722 3.96890 4.11350 4.23605 4.27786 4.28898 4.38657 4.48743 4.53494 4.53912 4.58142 4.73176 4.79658 4.88447 5.05379 5.09427 5.13354 5.14718 5.26637 5.27225 5.30831 5.32907 5.36675 5.45810 5.48017 5.81050 5.85433 5.88415 6.03205 6.24816 6.41151 6.47006 6.59506 6.86329 6.91338 7.13097 8.31984 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.002908 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.900640 B = 9627.585110 C =11628.228358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.052 3.948 4 O -0.344 6.344 5 C 0.134 3.866 6 C -0.223 4.223 7 C -0.050 4.050 8 C -0.180 4.180 9 C 0.175 3.825 10 N -0.657 5.657 11 C 0.560 3.440 12 O -0.564 6.564 13 C -0.142 4.142 14 C -0.190 4.190 15 C -0.097 4.097 16 C -0.207 4.207 17 C 0.064 3.936 18 C -0.495 4.495 19 H 0.085 0.915 20 C 0.024 3.976 21 N -0.835 5.835 22 Si 0.986 3.014 23 H -0.249 1.249 24 H -0.265 1.265 25 H -0.272 1.272 26 C -0.123 4.123 27 C -0.196 4.196 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.427 0.573 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.284 0.716 43 H 0.100 0.900 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.922 9.743 5.205 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.022 4.022 4 O -0.258 6.258 5 C 0.088 3.912 6 C -0.242 4.242 7 C -0.068 4.068 8 C -0.200 4.200 9 C 0.080 3.920 10 N -0.304 5.304 11 C 0.352 3.648 12 O -0.443 6.443 13 C -0.146 4.146 14 C -0.210 4.210 15 C -0.114 4.114 16 C -0.227 4.227 17 C 0.062 3.938 18 C -0.525 4.525 19 H 0.103 0.897 20 C -0.189 4.189 21 N -0.461 5.461 22 Si 0.807 3.193 23 H -0.173 1.173 24 H -0.190 1.190 25 H -0.197 1.197 26 C -0.143 4.143 27 C -0.217 4.217 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.175 0.825 36 H 0.191 0.809 37 H 0.176 0.824 38 H 0.268 0.732 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.130 0.870 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.324 8.736 4.780 20.855 hybrid contribution 0.746 -0.956 -0.381 1.271 sum -17.577 7.780 4.399 19.719 Atomic orbital electron populations 1.21656 0.91991 1.03244 1.03025 1.21546 0.97777 0.94216 1.02935 1.23175 0.76509 0.99837 1.02725 1.86069 1.23568 1.27595 1.88601 1.18854 0.91043 0.85393 0.95862 1.21518 1.01186 0.91424 1.10090 1.21202 0.93325 0.98112 0.94150 1.21174 0.94605 0.96697 1.07537 1.17701 0.82689 0.93711 0.97910 1.43319 1.04237 1.29617 1.53211 1.18967 0.88207 0.80139 0.77469 1.90726 1.73487 1.38402 1.41648 1.19657 0.90274 1.00173 1.04459 1.20920 0.95086 1.00135 1.04832 1.20964 0.93444 0.98224 0.98812 1.21502 0.99262 0.99841 1.02070 1.17973 0.91805 0.92866 0.91199 1.19890 1.01516 0.96749 1.34308 0.89668 1.26880 0.95321 1.00852 0.95892 1.69885 1.19186 1.21015 1.36054 0.85095 0.79080 0.77378 0.77782 1.17253 1.19021 1.19708 1.21519 0.94552 0.97737 1.00507 1.20276 0.92988 0.97804 1.10627 0.91282 0.91602 0.91144 0.92072 0.91570 0.90155 0.90797 0.82485 0.80911 0.82373 0.73179 0.84144 0.83851 0.86970 0.90568 0.88210 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.13 -2.23 6.30 30.59 0.19 -2.04 16 3 C 0.05 1.02 4.74 71.98 0.34 1.36 16 4 O -0.34 -10.70 10.13 -92.46 -0.94 -11.64 16 5 C 0.13 4.23 6.68 22.49 0.15 4.38 16 6 C -0.22 -4.91 9.04 22.39 0.20 -4.71 16 7 C -0.05 -0.93 10.03 22.24 0.22 -0.70 16 8 C -0.18 -4.11 9.96 22.41 0.22 -3.89 16 9 C 0.17 5.72 6.27 38.16 0.24 5.96 16 10 N -0.66 -22.45 5.28 -306.11 -1.62 -24.07 16 11 C 0.56 25.68 7.51 86.79 0.65 26.34 16 12 O -0.56 -30.76 14.03 -3.92 -0.05 -30.81 16 13 C -0.14 -6.80 5.87 -20.14 -0.12 -6.92 16 14 C -0.19 -7.33 9.55 22.70 0.22 -7.11 16 15 C -0.10 -3.73 10.01 22.18 0.22 -3.50 16 16 C -0.21 -9.55 9.78 22.77 0.22 -9.33 16 17 C 0.06 3.48 5.55 -21.33 -0.12 3.36 16 18 C -0.49 -27.17 9.06 23.47 0.21 -26.96 16 19 H 0.09 4.39 7.87 -2.91 -0.02 4.37 16 20 C 0.02 1.27 5.25 85.26 0.45 1.72 16 21 N -0.83 -47.89 10.82 21.83 0.24 -47.65 16 22 Si 0.99 40.58 29.57 68.60 2.03 42.61 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 24 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 C -0.12 -6.91 8.21 23.01 0.19 -6.72 16 27 C -0.20 -7.50 8.59 22.49 0.19 -7.30 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.23 7.67 -2.39 -0.02 1.22 16 34 H 0.07 1.23 7.65 -2.39 -0.02 1.21 16 35 H 0.16 2.36 6.29 -2.91 -0.02 2.34 16 36 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.43 11.05 6.85 -92.71 -0.63 10.42 16 39 H 0.14 3.96 6.39 -2.91 -0.02 3.94 16 40 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 42 H 0.28 15.11 8.30 -92.71 -0.77 14.34 16 43 H 0.10 6.33 5.77 -2.91 -0.02 6.31 16 44 H 0.10 4.56 6.43 -2.91 -0.02 4.54 16 Total: -1.00 -75.96 369.62 4.45 -71.50 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.39 Total: 37.00 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.40 Total: -36.94 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.38 Total: -71.73 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.99 Total: -42.45 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -75.96 4.45 -71.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049700238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.337 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds