Wall clock time and date at job start Tue Mar 31 2020 14:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47049 * 2 1 4 4 N 1.46500 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.36878 * 120.00066 * 91.83429 * 4 3 2 6 6 H 1.07999 * 119.99882 * 219.86434 * 5 4 3 7 7 C 1.39049 * 119.99711 * 39.86588 * 5 4 3 8 8 N 1.31358 * 120.00074 * 19.62993 * 7 5 4 9 9 Si 1.86803 * 119.99634 * 199.63521 * 7 5 4 10 10 H 1.48503 * 109.47171 * 89.99607 * 9 7 5 11 11 H 1.48503 * 109.46864 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47230 * 329.99900 * 9 7 5 13 13 C 1.34777 * 120.00348 * 271.83411 * 4 3 2 14 14 O 1.21592 * 119.99448 * 4.40407 * 13 4 3 15 15 C 1.47739 * 120.00579 * 184.40348 * 13 4 3 16 16 C 1.39681 * 120.11956 * 22.44118 * 15 13 4 17 17 C 1.37947 * 119.96565 * 180.02562 * 16 15 13 18 18 C 1.38300 * 120.21149 * 0.02562 * 17 16 15 19 19 C 1.38854 * 120.25127 * 359.97438 * 18 17 16 20 20 O 1.35893 * 119.98411 * 180.02562 * 19 18 17 21 21 C 1.35879 * 117.99768 * 182.86433 * 20 19 18 22 22 C 1.38764 * 120.05956 * 256.88319 * 21 20 19 23 23 C 1.38136 * 119.94435 * 179.72323 * 22 21 20 24 24 C 1.38274 * 120.05671 * 0.53147 * 23 22 21 25 25 C 1.38272 * 120.11464 * 359.76782 * 24 23 22 26 26 C 1.38136 * 120.05892 * 359.95200 * 25 24 23 27 27 C 1.38498 * 120.02908 * 359.73018 * 19 18 17 28 28 H 1.09003 * 109.47614 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47058 * 299.99563 * 1 2 3 30 30 H 1.09003 * 109.47574 * 59.99893 * 1 2 3 31 31 H 1.08998 * 109.47401 * 240.00074 * 2 1 3 32 32 H 1.09003 * 109.47574 * 120.00107 * 2 1 3 33 33 H 1.08995 * 109.47484 * 299.99997 * 3 2 1 34 34 H 1.08998 * 109.47281 * 60.00514 * 3 2 1 35 35 H 0.97000 * 119.99606 * 180.02562 * 8 7 5 36 36 H 1.08003 * 120.01638 * 359.97438 * 16 15 13 37 37 H 1.07995 * 119.89536 * 180.02562 * 17 16 15 38 38 H 1.08000 * 119.87629 * 179.97438 * 18 17 16 39 39 H 1.08002 * 120.02126 * 359.97438 * 22 21 20 40 40 H 1.07994 * 119.97338 * 180.27515 * 23 22 21 41 41 H 1.07997 * 119.94156 * 179.74760 * 24 23 22 42 42 H 1.08005 * 119.96897 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.02698 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.10658 * 180.27175 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1888 1.4806 -1.1857 6 1 5.0805 0.8849 -1.3139 7 6 3.7355 2.2864 -2.2243 8 7 2.9138 3.2802 -1.9741 9 14 4.2950 1.9554 -3.9756 10 1 3.3512 1.0118 -4.6268 11 1 4.3233 3.2309 -4.7356 12 1 5.6554 1.3603 -3.9565 13 6 4.1793 1.4050 1.1657 14 8 3.5745 1.2904 2.2142 15 6 5.6535 1.5031 1.1701 16 6 6.3203 2.0874 0.0908 17 6 7.6969 2.1769 0.0981 18 6 8.4203 1.6891 1.1711 19 6 7.7665 1.1066 2.2487 20 8 8.4827 0.6295 3.3005 21 6 7.8067 0.0143 4.3059 22 6 7.5756 0.6836 5.4993 23 6 6.8832 0.0579 6.5178 24 6 6.4300 -1.2380 6.3529 25 6 6.6644 -1.9093 5.1671 26 6 7.3513 -1.2862 4.1433 27 6 6.3845 1.0169 2.2548 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 2.5973 3.8420 -2.6987 36 1 5.7586 2.4682 -0.7493 37 1 8.2113 2.6293 -0.7368 38 1 9.4979 1.7616 1.1710 39 1 7.9333 1.6942 5.6302 40 1 6.6992 0.5799 7.4451 41 1 5.8924 -1.7268 7.1519 42 1 6.3097 -2.9216 5.0410 43 1 7.5337 -1.8109 3.2171 44 1 5.8744 0.5680 3.0943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:59 Heat of formation + Delta-G solvation = -4.141918 kcal Electronic energy + Delta-G solvation = -27298.760895 eV Core-core repulsion = 23568.058384 eV Total energy + Delta-G solvation = -3730.702511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.64782 -39.13869 -38.03967 -36.56892 -35.20083 -33.00330 -31.51549 -31.02535 -30.65497 -30.15341 -29.01588 -25.99026 -25.03010 -23.29571 -22.80021 -22.51823 -21.15306 -20.72842 -19.45738 -18.48534 -17.45276 -16.41511 -15.86710 -15.83591 -15.74160 -15.18927 -14.83354 -14.35923 -14.35106 -13.88232 -13.80446 -13.57181 -13.49227 -13.24193 -13.01519 -12.90918 -12.50066 -12.35444 -11.80248 -11.65512 -11.54391 -11.49486 -11.32018 -11.05326 -10.98258 -10.75141 -10.72222 -10.67920 -10.38837 -10.24387 -9.79308 -9.12729 -9.02331 -8.73871 -8.56308 -8.37657 -7.72649 -7.55073 -6.51426 -4.18596 1.12029 1.31560 1.59450 1.97979 3.04389 3.14653 3.15966 3.28757 3.79835 3.90522 3.98353 4.52473 4.62844 4.86823 4.87624 4.93810 5.05545 5.33242 5.36186 5.48270 5.48557 5.53703 5.75398 5.78923 5.89183 5.92972 5.93380 6.09186 6.11854 6.21297 6.32771 6.38817 6.40001 6.43297 6.50386 6.51553 6.62529 6.76789 6.77857 6.78919 7.02998 7.12443 7.21283 7.25612 7.36577 7.47847 7.81882 7.89010 8.26146 8.91324 9.39094 9.83037 10.48523 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.004143 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.598881 B = 6756.628383 C = 8272.681960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.117 3.883 4 N -0.426 5.426 5 C -0.341 4.341 6 H 0.097 0.903 7 C 0.045 3.955 8 N -0.850 5.850 9 Si 0.910 3.090 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.265 1.265 13 C 0.504 3.496 14 O -0.601 6.601 15 C -0.063 4.063 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.139 4.139 19 C 0.091 3.909 20 O -0.267 6.267 21 C 0.093 3.907 22 C -0.124 4.124 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.105 4.105 26 C -0.132 4.132 27 C -0.151 4.151 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.273 0.727 36 H 0.180 0.820 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -5.497 6.925 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.142 5.142 5 C -0.469 4.469 6 H 0.115 0.885 7 C -0.163 4.163 8 N -0.485 5.485 9 Si 0.736 3.264 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.189 1.189 13 C 0.294 3.706 14 O -0.488 6.488 15 C -0.066 4.066 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.158 4.158 19 C 0.049 3.951 20 O -0.180 6.180 21 C 0.051 3.949 22 C -0.142 4.142 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.123 4.123 26 C -0.150 4.150 27 C -0.171 4.171 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.197 0.803 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.132 -5.359 7.305 10.940 hybrid contribution 0.124 -0.169 -0.925 0.949 sum 6.256 -5.528 6.380 10.507 Atomic orbital electron populations 1.21657 0.96530 1.00493 1.01387 1.21829 0.94731 0.99308 1.01441 1.21418 0.81230 0.94684 1.03263 1.43297 1.04834 1.61765 1.04331 1.19532 1.12191 1.25293 0.89887 0.88542 1.25430 0.96952 0.93639 1.00295 1.69904 1.31515 1.13717 1.33324 0.86182 0.79760 0.78202 0.82251 1.19999 1.20690 1.18879 1.18307 0.86684 0.81529 0.84096 1.90610 1.69875 1.56352 1.31950 1.19901 0.94339 0.98509 0.93896 1.22913 0.93891 0.96085 0.99739 1.21022 0.94480 0.99989 0.97338 1.20424 0.99808 1.02813 0.92717 1.18879 0.89972 0.98425 0.87787 1.84280 1.34351 1.71289 1.28048 1.18641 0.96681 0.91416 0.88192 1.21294 0.99023 1.00300 0.93619 1.21028 0.97568 0.95081 0.98738 1.21211 1.00090 0.95050 0.97749 1.21040 0.98039 1.00201 0.93036 1.21496 0.98511 0.94757 1.00250 1.21325 0.91909 1.03683 1.00196 0.93594 0.93127 0.92986 0.92253 0.92816 0.88051 0.92735 0.91641 0.80299 0.85513 0.85906 0.85208 0.85380 0.85679 0.85451 0.85315 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.15 0.37 -2.01 16 2 C -0.13 -2.74 6.25 -26.73 -0.17 -2.90 16 3 C 0.12 2.76 4.93 -4.04 -0.02 2.74 16 4 N -0.43 -10.58 2.50 -115.92 -0.29 -10.87 16 5 C -0.34 -8.17 5.90 -15.00 -0.09 -8.26 16 6 H 0.10 2.26 6.35 -52.49 -0.33 1.93 16 7 C 0.04 1.05 4.78 -17.45 -0.08 0.96 16 8 N -0.85 -21.09 11.55 55.50 0.64 -20.45 16 9 Si 0.91 18.18 29.60 -169.99 -5.03 13.15 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 13 C 0.50 12.80 7.48 -12.38 -0.09 12.71 16 14 O -0.60 -16.49 16.21 5.29 0.09 -16.40 16 15 C -0.06 -1.43 5.65 -104.99 -0.59 -2.02 16 16 C -0.11 -2.23 7.87 -39.15 -0.31 -2.54 16 17 C -0.11 -1.89 10.03 -39.67 -0.40 -2.29 16 18 C -0.14 -2.30 9.98 -39.33 -0.39 -2.70 16 19 C 0.09 1.66 6.61 -39.26 -0.26 1.40 16 20 O -0.27 -4.52 9.98 -3.53 -0.04 -4.56 16 21 C 0.09 1.45 4.34 -39.20 -0.17 1.28 16 22 C -0.12 -1.72 9.99 -39.42 -0.39 -2.11 16 23 C -0.11 -1.26 10.04 -39.61 -0.40 -1.65 16 24 C -0.12 -1.40 10.04 -39.56 -0.40 -1.80 16 25 C -0.11 -1.29 10.04 -39.61 -0.40 -1.69 16 26 C -0.13 -1.89 9.07 -39.43 -0.36 -2.25 16 27 C -0.15 -3.12 8.52 -39.00 -0.33 -3.45 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 2.47 5.64 -51.93 -0.29 2.18 16 34 H 0.05 1.34 7.54 -51.93 -0.39 0.95 16 35 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.18 3.96 4.74 -52.48 -0.25 3.71 16 37 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.13 2.77 6.17 -52.48 -0.32 2.45 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -28.65 368.45 -9.36 -38.01 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.80 Total: 12.16 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -4.48 Total: -16.58 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.35 Total: -31.33 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.05 Total: -20.96 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.65 -9.36 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.867 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds