Wall clock time and date at job start Tue Mar 31 2020 14:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46861 * 2 1 4 4 H 1.09001 * 109.47270 * 54.49375 * 3 2 1 5 5 N 1.46494 * 109.47365 * 294.49179 * 3 2 1 6 6 S 1.65598 * 120.00239 * 144.01641 * 5 3 2 7 7 O 1.42093 * 104.28014 * 179.68324 * 6 5 3 8 8 O 1.42095 * 104.27580 * 307.54270 * 6 5 3 9 9 C 1.81400 * 104.44909 * 63.61127 * 6 5 3 10 10 C 1.53003 * 109.47115 * 180.02562 * 9 6 5 11 11 C 1.52999 * 109.47071 * 179.97438 * 10 9 6 12 12 C 1.50699 * 109.46906 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00363 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99884 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00142 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00047 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46969 * 59.99874 * 16 14 12 18 18 H 1.48500 * 109.47333 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47475 * 300.00225 * 16 14 12 20 20 C 1.50707 * 109.46879 * 174.49025 * 3 2 1 21 21 C 1.38230 * 119.99749 * 79.72852 * 20 3 2 22 22 C 1.38242 * 119.99728 * 179.76641 * 21 20 3 23 23 C 1.38234 * 119.99721 * 0.50804 * 22 21 20 24 24 C 1.50705 * 119.99608 * 179.72701 * 23 22 21 25 25 C 1.38236 * 120.00458 * 359.74217 * 23 22 21 26 26 C 1.38234 * 119.99838 * 260.00300 * 20 3 2 27 27 H 1.09002 * 109.46746 * 296.70158 * 1 2 3 28 28 H 1.09000 * 109.47380 * 56.69864 * 1 2 3 29 29 H 1.08996 * 109.47191 * 176.70360 * 1 2 3 30 30 H 1.09000 * 109.47001 * 240.00461 * 2 1 3 31 31 H 1.08993 * 109.47527 * 120.00332 * 2 1 3 32 32 H 0.97000 * 120.00035 * 324.01285 * 5 3 2 33 33 H 1.08996 * 109.47487 * 300.00018 * 9 6 5 34 34 H 1.09000 * 109.46995 * 60.00414 * 9 6 5 35 35 H 1.08997 * 109.47396 * 300.00504 * 10 9 6 36 36 H 1.09000 * 109.46902 * 60.00294 * 10 9 6 37 37 H 1.08996 * 109.47722 * 300.00072 * 11 10 9 38 38 H 1.09000 * 109.46803 * 60.00495 * 11 10 9 39 39 H 0.97001 * 119.99931 * 180.02562 * 15 14 12 40 40 H 1.07997 * 120.00395 * 359.97438 * 21 20 3 41 41 H 1.07996 * 120.00097 * 180.23454 * 22 21 20 42 42 H 1.08998 * 109.47084 * 270.01499 * 24 23 22 43 43 H 1.08992 * 109.47258 * 30.02141 * 24 23 22 44 44 H 1.08997 * 109.46864 * 150.02102 * 24 23 22 45 45 H 1.08001 * 120.00229 * 179.97438 * 25 23 22 46 46 H 1.08001 * 120.00213 * 0.02562 * 26 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5983 1.9841 0.8366 5 7 1.6629 2.0938 -1.2569 6 16 1.2427 3.6956 -1.2659 7 8 0.9535 3.9744 -2.6289 8 8 0.2369 3.7996 -0.2675 9 6 2.7489 4.5617 -0.7448 10 6 2.4856 6.0685 -0.7126 11 6 3.7558 6.7990 -0.2724 12 6 3.4962 8.2831 -0.2401 13 1 2.5227 8.6670 -0.5072 14 6 4.5018 9.1509 0.1295 15 7 5.6874 8.6836 0.4543 16 14 4.1803 10.9907 0.1689 17 1 3.0848 11.2812 1.1285 18 1 5.4131 11.6997 0.5962 19 1 3.7869 11.4536 -1.1861 20 6 3.5408 1.4448 0.1364 21 6 4.3354 1.1947 -0.9667 22 6 5.7122 1.2015 -0.8426 23 6 6.2941 1.4479 0.3869 24 6 7.7950 1.4492 0.5234 25 6 5.4994 1.6929 1.4911 26 6 4.1227 1.6912 1.3659 27 1 -0.3633 0.4618 0.9181 28 1 -0.3634 0.5642 -0.8589 29 1 -0.3633 -1.0259 -0.0591 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6594 1.5869 -2.0838 33 1 3.0375 4.2224 0.2500 34 1 3.5530 4.3480 -1.4490 35 1 2.1968 6.4083 -1.7072 36 1 1.6816 6.2819 -0.0081 37 1 4.0442 6.4593 0.7223 38 1 4.5601 6.5857 -0.9766 39 1 6.3948 9.2941 0.7147 40 1 3.8807 0.9974 -1.9262 41 1 6.3331 1.0099 -1.7052 42 1 8.1385 0.4438 0.7663 43 1 8.2450 1.7700 -0.4160 44 1 8.0868 2.1349 1.3189 45 1 5.9540 1.8850 2.4518 46 1 3.5018 1.8818 2.2288 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068872773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:44 Heat of formation + Delta-G solvation = -102.487928 kcal Electronic energy + Delta-G solvation = -26028.234296 eV Core-core repulsion = 22428.711134 eV Total energy + Delta-G solvation = -3599.523162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.61628 -38.27456 -37.69816 -37.06580 -36.48112 -34.18055 -33.28838 -32.72981 -31.73590 -29.66633 -28.72075 -25.68838 -25.52411 -23.69359 -22.65468 -22.40885 -21.45136 -20.41349 -18.77412 -18.53251 -17.82094 -17.26025 -16.94541 -16.58982 -16.40272 -16.01984 -15.78592 -15.54967 -15.05720 -14.60693 -14.52549 -14.45509 -14.22808 -14.10338 -13.71306 -13.54162 -13.28191 -13.20968 -13.14950 -13.09520 -12.93719 -12.92855 -12.74176 -12.66769 -12.57270 -12.22677 -12.06409 -11.95552 -11.82392 -11.77187 -11.67622 -11.39811 -11.13912 -10.57503 -10.47881 -9.77158 -9.37741 -8.22420 -6.33919 -0.75663 0.40453 0.55275 1.39583 1.42315 1.50193 1.75700 2.39480 2.70601 2.85167 3.10762 3.20383 3.68791 3.72783 3.87200 3.90702 4.01395 4.11584 4.17093 4.22006 4.31421 4.37304 4.47703 4.59231 4.63080 4.70898 4.75238 4.83278 4.90000 4.94490 4.95539 4.98857 5.05180 5.16906 5.21682 5.30128 5.31857 5.44096 5.48303 5.55214 5.61307 5.73270 5.76258 5.78595 6.11718 6.16020 6.18946 6.81133 7.35337 8.88810 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010375 B = 0.004143 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.243237 B = 6757.422748 C = 8789.876903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C 0.188 3.812 4 H 0.096 0.904 5 N -1.097 6.097 6 S 2.629 3.371 7 O -0.990 6.990 8 O -0.985 6.985 9 C -0.606 4.606 10 C -0.104 4.104 11 C 0.036 3.964 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.267 1.267 20 C -0.121 4.121 21 C -0.104 4.104 22 C -0.133 4.133 23 C -0.097 4.097 24 C -0.116 4.116 25 C -0.133 4.133 26 C -0.118 4.118 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.428 0.572 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.000 1.000 38 H -0.001 1.001 39 H 0.265 0.735 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.129 0.871 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -22.714 -0.335 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C 0.081 3.919 4 H 0.114 0.886 5 N -0.858 5.858 6 S 2.724 3.276 7 O -0.981 6.981 8 O -0.974 6.974 9 C -0.736 4.736 10 C -0.143 4.143 11 C -0.002 4.002 12 C -0.592 4.592 13 H 0.079 0.921 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.151 4.151 23 C -0.097 4.097 24 C -0.172 4.172 25 C -0.151 4.151 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.265 0.735 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.147 0.853 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.692 -22.238 -0.361 22.404 hybrid contribution 0.976 0.983 0.027 1.385 sum -1.716 -21.255 -0.333 21.327 Atomic orbital electron populations 1.21827 0.95351 1.02323 1.02011 1.21722 0.96059 0.92821 1.04342 1.19896 0.89679 0.96864 0.85508 0.88566 1.55372 1.86191 1.27675 1.16536 1.04234 0.76292 0.73906 0.73183 1.93534 1.84466 1.84478 1.35595 1.93538 1.55438 1.86018 1.62441 1.30506 1.21738 1.07858 1.13521 1.21303 1.00835 0.90348 1.01857 1.18897 0.92154 0.93985 0.95188 1.21701 0.98101 0.93282 1.46087 0.92146 1.25925 0.94768 1.04112 0.94580 1.70073 1.03491 1.36790 1.46486 0.85545 0.77770 0.78994 0.79048 1.19184 1.20562 1.19229 1.20338 0.95733 1.02039 0.94133 1.21142 0.93338 0.98850 0.98919 1.21305 0.95359 1.00979 0.97436 1.20269 0.97119 0.98524 0.93772 1.20839 0.90395 1.02974 1.03040 1.21258 0.93903 1.00836 0.99080 1.21260 0.95239 0.99493 0.97671 0.93010 0.93218 0.91071 0.89758 0.89362 0.73483 0.84628 0.84370 0.91613 0.91491 0.98137 0.98280 0.92652 0.84317 0.84740 0.89783 0.91232 0.91702 0.85276 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.84 71.98 0.71 -1.64 16 2 C -0.11 -1.48 5.51 30.60 0.17 -1.31 16 3 C 0.19 3.37 2.37 44.25 0.10 3.48 16 4 H 0.10 1.87 7.39 -2.39 -0.02 1.85 16 5 N -1.10 -21.60 4.09 -172.52 -0.71 -22.31 16 6 S 2.63 76.47 5.42 -56.49 -0.31 76.16 16 7 O -0.99 -34.33 18.08 -127.65 -2.31 -36.64 16 8 O -0.98 -33.82 17.45 -127.65 -2.23 -36.04 16 9 C -0.61 -19.48 5.71 71.98 0.41 -19.07 16 10 C -0.10 -4.38 5.16 30.60 0.16 -4.22 16 11 C 0.04 1.90 4.97 29.85 0.15 2.05 16 12 C -0.55 -31.92 9.11 25.60 0.23 -31.69 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 16 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.12 -2.34 4.31 -19.87 -0.09 -2.42 16 21 C -0.10 -1.96 9.32 22.27 0.21 -1.75 16 22 C -0.13 -2.65 9.70 22.27 0.22 -2.44 16 23 C -0.10 -2.06 5.88 -19.86 -0.12 -2.18 16 24 C -0.12 -2.02 10.01 71.24 0.71 -1.31 16 25 C -0.13 -2.89 9.70 22.27 0.22 -2.68 16 26 C -0.12 -2.46 9.67 22.27 0.22 -2.24 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.84 7.68 -2.39 -0.02 0.82 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.43 6.29 8.58 -96.75 -0.83 5.46 16 33 H 0.14 4.07 7.83 -2.39 -0.02 4.06 16 34 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 35 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.14 2.00 7.55 -2.91 -0.02 1.98 16 41 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 44 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 45 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 46 H 0.14 2.40 8.04 -2.91 -0.02 2.37 16 Total: -1.00 -74.64 392.73 0.64 -74.00 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.12 Total: 20.91 kcal Atomic # 6 Polarization: -70.46 SS G_CDS: 3.76 Total: -66.70 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -0.42 Total: -78.17 kcal Atomic # 8 Polarization: -68.15 SS G_CDS: -4.54 Total: -72.69 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 76.47 SS G_CDS: -0.31 Total: 76.16 kcal Total: -74.64 0.64 -74.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068872773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.493 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds