Wall clock time and date at job start Tue Mar 31 2020 16:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 115.54586 * 2 1 4 4 C 1.52997 * 117.50287 * 214.28962 * 2 1 3 5 5 C 1.53004 * 117.50245 * 145.66288 * 2 1 3 6 6 H 1.08997 * 117.50159 * 215.00515 * 5 2 1 7 7 C 1.50703 * 117.49351 * 0.02562 * 5 2 1 8 8 C 1.34519 * 125.78537 * 239.99084 * 7 5 2 9 9 C 1.41384 * 106.83935 * 179.97438 * 8 7 5 10 10 C 1.34513 * 106.83915 * 0.02562 * 9 8 7 11 11 C 1.50706 * 125.78651 * 179.97438 * 10 9 8 12 12 N 1.46502 * 109.47114 * 90.02309 * 11 10 9 13 13 C 1.34777 * 119.99988 * 180.02562 * 12 11 10 14 14 O 1.21538 * 119.99827 * 359.97438 * 13 12 11 15 15 C 1.47881 * 119.99750 * 179.97438 * 13 12 11 16 16 C 1.39921 * 120.03141 * 0.02562 * 15 13 12 17 17 C 1.38321 * 120.36177 * 179.97438 * 16 15 13 18 18 C 1.37753 * 120.41636 * 359.97438 * 17 16 15 19 19 C 1.40754 * 120.03529 * 0.03529 * 18 17 16 20 20 C 1.41435 * 120.17660 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99792 * 24.37032 * 20 19 18 22 22 C 1.39937 * 120.00029 * 204.36128 * 20 19 18 23 23 N 1.30828 * 120.00202 * 17.86125 * 22 20 19 24 24 Si 1.86804 * 120.00094 * 197.85585 * 22 20 19 25 25 H 1.48503 * 109.46909 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46871 * 120.00054 * 24 22 20 27 27 H 1.48498 * 109.47266 * 240.00165 * 24 22 20 28 28 C 1.38999 * 120.02183 * 179.97438 * 15 13 12 29 29 O 1.34298 * 125.79340 * 60.26733 * 7 5 2 30 30 H 1.09005 * 109.47135 * 274.32956 * 1 2 3 31 31 H 1.08990 * 109.47495 * 34.33490 * 1 2 3 32 32 H 1.09008 * 109.47070 * 154.33386 * 1 2 3 33 33 H 1.08995 * 117.50502 * 145.02206 * 4 2 1 34 34 H 1.09002 * 117.49822 * 359.97438 * 4 2 1 35 35 H 1.07998 * 126.58172 * 359.95172 * 8 7 5 36 36 H 1.07995 * 126.57990 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47289 * 330.01852 * 11 10 9 38 38 H 1.09001 * 109.46870 * 210.01436 * 11 10 9 39 39 H 0.97006 * 119.99835 * 359.97438 * 12 11 10 40 40 H 1.08003 * 119.81853 * 359.96256 * 16 15 13 41 41 H 1.08007 * 119.79242 * 179.97438 * 17 16 15 42 42 H 1.07993 * 119.98272 * 180.02562 * 18 17 16 43 43 H 0.96991 * 120.00411 * 180.02562 * 23 22 20 44 44 H 1.07991 * 120.20203 * 359.74538 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7645 5 6 2.2365 -1.1206 0.7655 6 1 3.1713 -0.8745 1.2690 7 6 1.3720 -2.1403 1.4613 8 6 1.3675 -2.3981 2.7816 9 6 0.4120 -3.4179 2.9964 10 6 -0.1096 -3.7226 1.7946 11 6 -1.1707 -4.7601 1.5319 12 7 -2.4945 -4.1402 1.6292 13 6 -3.6022 -4.8821 1.4313 14 8 -3.5028 -6.0652 1.1715 15 6 -4.9385 -4.2564 1.5301 16 6 -5.0536 -2.8943 1.8286 17 6 -6.3001 -2.3019 1.9222 18 6 -7.4423 -3.0455 1.7223 19 6 -7.3465 -4.4171 1.4213 20 6 -8.5173 -5.1835 1.2160 21 1 -9.4302 -4.7006 0.8998 22 6 -8.4929 -6.5673 1.4224 23 7 -7.5295 -7.1073 2.1238 24 14 -9.8361 -7.6438 0.6967 25 1 -10.8011 -6.7961 -0.0487 26 1 -9.2303 -8.6345 -0.2290 27 1 -10.5443 -8.3564 1.7902 28 6 -6.0812 -5.0209 1.3255 29 8 0.4793 -2.9493 0.8679 30 1 -0.3634 0.0776 1.0248 31 1 -0.3634 0.8485 -0.5796 32 1 -0.3634 -0.9263 -0.4451 33 1 3.1715 -0.8756 -1.2679 34 1 1.6113 -1.8592 -1.2672 35 1 1.9769 -1.9184 3.5331 36 1 0.1517 -3.8667 3.9436 37 1 -1.0883 -5.5588 2.2690 38 1 -1.0355 -5.1729 0.5321 39 1 -2.5738 -3.1960 1.8369 40 1 -4.1644 -2.3021 1.9870 41 1 -6.3783 -1.2498 2.1535 42 1 -8.4119 -2.5758 1.7966 43 1 -7.5124 -8.0664 2.2666 44 1 -5.9970 -6.0715 1.0901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077698948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:34 Heat of formation + Delta-G solvation = 14.725821 kcal Electronic energy + Delta-G solvation = -26088.187910 eV Core-core repulsion = 22358.303565 eV Total energy + Delta-G solvation = -3729.884344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.80214 -39.20892 -38.06097 -37.04422 -34.65208 -33.73152 -33.09448 -30.94104 -29.79415 -29.43633 -28.70367 -26.31131 -25.22348 -22.86774 -22.06698 -22.04213 -21.03387 -20.83483 -19.92451 -19.60428 -17.91417 -16.85275 -16.57412 -16.01760 -15.78820 -15.34145 -15.04956 -14.86496 -14.68620 -14.19133 -13.65611 -13.43537 -13.30600 -13.22094 -13.04594 -12.88973 -12.67599 -12.60145 -12.49809 -12.16544 -11.95677 -11.73709 -11.63602 -11.17164 -11.08673 -10.88706 -10.74549 -10.49688 -10.36619 -10.07342 -9.97128 -9.69979 -9.23355 -9.15702 -8.77696 -8.36794 -7.64780 -7.53269 -6.81188 -4.42118 1.42329 2.18235 2.38154 2.63624 2.79901 3.07751 3.12486 3.14544 3.49990 3.79535 3.83247 3.91591 4.14113 4.34455 4.48901 4.61548 4.63287 4.91758 4.97173 5.02508 5.32295 5.37310 5.45967 5.47157 5.56923 5.59923 5.62316 5.73402 5.78542 5.81240 5.88952 5.92768 6.07733 6.09501 6.26657 6.36951 6.70643 6.71605 6.97396 7.00154 7.05061 7.20088 7.36844 7.68393 7.73720 7.90884 8.04587 8.17121 8.49422 8.79025 8.82058 8.88340 10.13567 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002496 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.168038 B =11215.623824 C =11821.232132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.136 4.136 3 H 0.113 0.887 4 C -0.167 4.167 5 C -0.085 4.085 6 H 0.133 0.867 7 C 0.029 3.971 8 C -0.208 4.208 9 C -0.184 4.184 10 C -0.028 4.028 11 C 0.204 3.796 12 N -0.735 5.735 13 C 0.567 3.433 14 O -0.544 6.544 15 C -0.128 4.128 16 C -0.217 4.217 17 C -0.097 4.097 18 C -0.211 4.211 19 C 0.098 3.902 20 C -0.459 4.459 21 H 0.082 0.918 22 C 0.073 3.927 23 N -0.783 5.783 24 Si 0.909 3.091 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.091 4.091 29 O -0.166 6.166 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.402 0.598 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.284 0.716 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.585 10.286 -1.070 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 H 0.131 0.869 4 C -0.204 4.204 5 C -0.103 4.103 6 H 0.151 0.849 7 C -0.022 4.022 8 C -0.227 4.227 9 C -0.204 4.204 10 C -0.078 4.078 11 C 0.081 3.919 12 N -0.390 5.390 13 C 0.358 3.642 14 O -0.422 6.422 15 C -0.131 4.131 16 C -0.237 4.237 17 C -0.115 4.115 18 C -0.231 4.231 19 C 0.095 3.905 20 C -0.488 4.488 21 H 0.100 0.900 22 C -0.146 4.146 23 N -0.407 5.407 24 Si 0.734 3.266 25 H -0.183 1.183 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.111 4.111 29 O -0.062 6.062 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.238 0.762 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.669 9.160 -1.474 19.956 hybrid contribution -0.359 -0.023 0.255 0.442 sum 17.310 9.136 -1.219 19.611 Atomic orbital electron populations 1.21404 0.92100 1.02610 1.02344 1.22520 0.96194 0.94058 1.02677 0.86940 1.23210 1.03069 1.01721 0.92408 1.20623 0.98789 0.96634 0.94251 0.84902 1.21303 0.94244 0.95040 0.91583 1.21475 1.03821 1.02068 0.95364 1.21664 0.99766 1.00616 0.98369 1.22363 1.00116 0.98034 0.87333 1.19503 0.78243 0.90493 1.03689 1.46039 1.04389 1.13813 1.74788 1.18864 0.84502 0.85893 0.74973 1.90704 1.87353 1.15800 1.48337 1.19422 0.91316 0.94348 1.07996 1.20333 0.96080 0.93560 1.13762 1.20429 0.92866 0.97532 1.00709 1.21102 0.96387 0.95536 1.10104 1.17608 0.92816 0.91308 0.88719 1.19621 0.97159 0.91695 1.40291 0.90015 1.25973 0.96861 0.98956 0.92839 1.69794 1.30256 1.13785 1.26857 0.86239 0.80896 0.79827 0.79683 1.18329 1.19539 1.19906 1.21637 0.90010 1.00226 0.99243 1.83957 1.43688 1.41117 1.37465 0.92005 0.91788 0.91890 0.88000 0.87954 0.83458 0.83126 0.88558 0.90153 0.76212 0.89317 0.88899 0.88588 0.90465 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.16 37.15 0.34 -0.84 16 2 C -0.14 -1.06 6.41 -90.62 -0.58 -1.64 16 3 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.17 -1.30 9.81 -26.73 -0.26 -1.57 16 5 C -0.09 -0.71 6.24 -91.77 -0.57 -1.28 16 6 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 7 C 0.03 0.32 5.89 -35.62 -0.21 0.11 16 8 C -0.21 -2.23 10.81 -39.70 -0.43 -2.66 16 9 C -0.18 -2.17 10.81 -39.70 -0.43 -2.59 16 10 C -0.03 -0.37 6.69 -35.62 -0.24 -0.61 16 11 C 0.20 2.95 6.20 -5.19 -0.03 2.92 16 12 N -0.73 -12.41 5.50 -62.42 -0.34 -12.76 16 13 C 0.57 12.37 7.77 -12.31 -0.10 12.27 16 14 O -0.54 -13.49 16.33 5.33 0.09 -13.41 16 15 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 16 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 17 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 18 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 19 C 0.10 2.59 5.57 -106.87 -0.60 1.99 16 20 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 21 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 22 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 23 N -0.78 -20.67 10.96 55.55 0.61 -20.06 16 24 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 25 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.09 -2.42 8.23 -38.44 -0.32 -2.74 16 29 O -0.17 -2.15 9.64 5.72 0.06 -2.09 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.68 7.28 -51.92 -0.38 0.31 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.94 7.87 -51.93 -0.41 0.53 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.40 6.18 6.48 -40.82 -0.26 5.91 16 40 H 0.09 1.58 6.38 -52.48 -0.33 1.24 16 41 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 43 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 44 H 0.13 3.85 5.74 -52.49 -0.30 3.55 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -29.91 375.51 -10.47 -40.38 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -5.89 Total: 12.30 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -5.62 Total: -23.72 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.27 Total: -32.82 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.14 Total: -15.50 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.91 -10.47 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077698948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.103 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds