Wall clock time and date at job start Tue Mar 31 2020 16:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 115.54662 * 2 1 4 4 C 1.53068 * 117.51235 * 145.72414 * 2 1 3 5 5 C 1.52993 * 117.49654 * 214.33455 * 2 1 3 6 6 H 1.09003 * 117.50463 * 359.97438 * 5 2 1 7 7 C 1.50705 * 117.49716 * 144.99818 * 5 2 1 8 8 C 1.34511 * 125.78679 * 239.90706 * 7 5 2 9 9 C 1.41385 * 106.83825 * 179.79617 * 8 7 5 10 10 C 1.34511 * 106.84107 * 0.36935 * 9 8 7 11 11 C 1.50702 * 125.79133 * 179.88851 * 10 9 8 12 12 N 1.46503 * 109.47060 * 89.69659 * 11 10 9 13 13 C 1.34773 * 120.00378 * 180.02562 * 12 11 10 14 14 O 1.21553 * 119.99586 * 359.97438 * 13 12 11 15 15 C 1.47888 * 120.00132 * 180.02562 * 13 12 11 16 16 C 1.39914 * 120.02242 * 359.72582 * 15 13 12 17 17 C 1.38332 * 120.35455 * 179.72074 * 16 15 13 18 18 C 1.37759 * 120.41129 * 0.55357 * 17 16 15 19 19 C 1.40747 * 120.03818 * 359.72308 * 18 17 16 20 20 C 1.41434 * 120.17816 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00458 * 150.17695 * 20 19 18 22 22 C 1.39939 * 119.99790 * 330.17568 * 20 19 18 23 23 N 1.30833 * 120.00105 * 161.73544 * 22 20 19 24 24 Si 1.86799 * 120.00017 * 341.73019 * 22 20 19 25 25 H 1.48498 * 109.47074 * 95.41545 * 24 22 20 26 26 H 1.48499 * 109.47150 * 215.41620 * 24 22 20 27 27 H 1.48505 * 109.47104 * 335.41379 * 24 22 20 28 28 C 1.38993 * 120.02154 * 179.97438 * 15 13 12 29 29 O 1.34299 * 125.78685 * 59.93823 * 7 5 2 30 30 H 1.09006 * 109.47163 * 205.66675 * 1 2 3 31 31 H 1.08998 * 109.47438 * 325.66624 * 1 2 3 32 32 H 1.09006 * 109.47319 * 85.67078 * 1 2 3 33 33 H 1.09000 * 117.49329 * 359.97438 * 4 2 1 34 34 H 1.09004 * 117.51329 * 214.95694 * 4 2 1 35 35 H 1.07993 * 126.58479 * 0.04501 * 8 7 5 36 36 H 1.08007 * 126.57909 * 180.24345 * 9 8 7 37 37 H 1.08997 * 109.47155 * 329.69912 * 11 10 9 38 38 H 1.08998 * 109.47288 * 209.69630 * 11 10 9 39 39 H 0.97000 * 119.99875 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.82540 * 359.97081 * 16 15 13 41 41 H 1.08002 * 119.79909 * 180.25898 * 17 16 15 42 42 H 1.08003 * 119.97966 * 179.70110 * 18 17 16 43 43 H 0.96998 * 120.00003 * 179.97438 * 23 22 20 44 44 H 1.08003 * 120.20760 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1218 0.7646 5 6 2.2364 -1.1206 -0.7654 6 1 1.6112 -1.8582 -1.2687 7 6 3.5289 -0.7803 -1.4616 8 6 3.7637 -0.8891 -2.7816 9 6 5.0942 -0.4621 -2.9974 10 6 5.5954 -0.1258 -1.7954 11 6 6.9886 0.3855 -1.5331 12 7 6.9993 1.8470 -1.6335 13 6 8.1457 2.5277 -1.4365 14 8 9.1707 1.9289 -1.1750 15 6 8.1564 4.0031 -1.5374 16 6 6.9778 4.6924 -1.8430 17 6 6.9787 6.0728 -1.9333 18 6 8.1418 6.7838 -1.7349 19 6 9.3383 6.1073 -1.4323 20 6 10.5340 6.8344 -1.2274 21 1 11.2927 6.4498 -0.5619 22 6 10.7340 8.0522 -1.8870 23 7 11.6380 8.8916 -1.4511 24 14 9.7105 8.4794 -3.3901 25 1 8.5494 9.3088 -2.9789 26 1 10.5436 9.2388 -4.3568 27 1 9.2249 7.2302 -4.0296 28 6 9.3384 4.7055 -1.3338 29 8 4.6418 -0.3177 -0.8692 30 1 -0.3634 -0.9263 0.4451 31 1 -0.3634 0.8486 0.5796 32 1 -0.3634 0.0776 -1.0248 33 1 1.6120 -1.8594 1.2678 34 1 3.1724 -0.8765 1.2677 35 1 3.0682 -1.2324 -3.5329 36 1 5.6099 -0.4168 -3.9454 37 1 7.6742 -0.0343 -2.2691 38 1 7.3026 0.0878 -0.5327 39 1 6.1815 2.3248 -1.8426 40 1 6.0616 4.1442 -2.0052 41 1 6.0630 6.5960 -2.1656 42 1 8.1356 7.8611 -1.8119 43 1 11.7769 9.7355 -1.9086 44 1 10.2513 4.1773 -1.1012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077698950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:40 Heat of formation + Delta-G solvation = 14.906788 kcal Electronic energy + Delta-G solvation = -25611.252764 eV Core-core repulsion = 21881.376267 eV Total energy + Delta-G solvation = -3729.876497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.87934 -39.46199 -38.12949 -37.35607 -34.85888 -33.70904 -33.19621 -31.29000 -30.36049 -29.99170 -28.76285 -26.34217 -25.12486 -23.14604 -22.34075 -21.99661 -21.13312 -20.71044 -20.21016 -20.04356 -18.22340 -17.15458 -16.49629 -16.37454 -15.68413 -15.56630 -15.23867 -14.82035 -14.70249 -14.52687 -13.94066 -13.68184 -13.62151 -13.46944 -13.12102 -13.01962 -12.77435 -12.75452 -12.65645 -12.25340 -12.16528 -11.98079 -11.87646 -11.62567 -11.06735 -10.99191 -10.80467 -10.56931 -10.49135 -10.10345 -10.02460 -9.75162 -9.51806 -9.21029 -8.97540 -8.46838 -7.89500 -7.78210 -7.02111 -4.56931 1.31777 1.87520 2.28150 2.49735 2.53477 3.04305 3.16335 3.24616 3.42224 3.56713 3.60633 3.91814 4.02358 4.32879 4.41208 4.45993 4.49622 4.82342 4.86734 4.90420 5.18730 5.22774 5.29890 5.31911 5.34003 5.36010 5.53020 5.58730 5.62542 5.67430 5.78717 5.85036 5.85262 5.86912 6.00590 6.27191 6.36489 6.50903 6.64124 6.66867 6.94742 6.95455 7.18440 7.37883 7.47580 7.70741 7.74894 7.96544 8.26515 8.50975 8.60821 8.69869 9.99965 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002339 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.104375 B =11968.326149 C =12585.351089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.083 4.083 6 H 0.134 0.866 7 C 0.026 3.974 8 C -0.207 4.207 9 C -0.183 4.183 10 C -0.031 4.031 11 C 0.204 3.796 12 N -0.733 5.733 13 C 0.566 3.434 14 O -0.546 6.546 15 C -0.108 4.108 16 C -0.216 4.216 17 C -0.083 4.083 18 C -0.221 4.221 19 C 0.081 3.919 20 C -0.442 4.442 21 H 0.094 0.906 22 C 0.083 3.917 23 N -0.803 5.803 24 Si 0.911 3.089 25 H -0.269 1.269 26 H -0.289 1.289 27 H -0.244 1.244 28 C -0.134 4.134 29 O -0.167 6.167 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.404 0.596 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.287 0.713 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.952 -16.449 -1.455 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.157 4.157 3 H 0.127 0.873 4 C -0.202 4.202 5 C -0.101 4.101 6 H 0.152 0.848 7 C -0.025 4.025 8 C -0.226 4.226 9 C -0.203 4.203 10 C -0.081 4.081 11 C 0.081 3.919 12 N -0.387 5.387 13 C 0.357 3.643 14 O -0.424 6.424 15 C -0.111 4.111 16 C -0.236 4.236 17 C -0.101 4.101 18 C -0.241 4.241 19 C 0.078 3.922 20 C -0.470 4.470 21 H 0.112 0.888 22 C -0.137 4.137 23 N -0.426 5.426 24 Si 0.737 3.263 25 H -0.195 1.195 26 H -0.216 1.216 27 H -0.167 1.167 28 C -0.155 4.155 29 O -0.064 6.064 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.240 0.760 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.965 -16.606 -0.926 25.225 hybrid contribution -0.791 0.534 -1.012 1.391 sum -19.755 -16.073 -1.938 25.541 Atomic orbital electron populations 1.21392 0.92034 1.02357 1.02252 1.22543 0.95575 0.94863 1.02729 0.87307 1.23215 1.03261 1.01381 0.92367 1.20604 0.91877 1.03308 0.94277 0.84825 1.21411 0.87110 1.02265 0.91697 1.21488 0.97504 1.08260 0.95348 1.21681 0.95469 1.04787 0.98324 1.22331 0.91688 1.06698 0.87336 1.19525 0.87200 0.81325 1.03876 1.46030 1.12679 1.05780 1.74261 1.18805 0.82164 0.88225 0.75106 1.90712 1.32554 1.70694 1.48416 1.19369 0.95642 0.89926 1.06155 1.20382 0.95778 0.94187 1.13244 1.20512 0.96923 0.93655 0.99000 1.21184 0.93015 0.98411 1.11452 1.17702 0.92993 0.91337 0.90154 1.19520 1.02238 1.01759 1.23445 0.88801 1.26177 0.94588 0.94340 0.98554 1.69692 1.28976 1.07417 1.36547 0.86310 0.78997 0.80168 0.80818 1.19545 1.21638 1.16666 1.21277 0.96018 0.93394 1.04781 1.83948 1.19607 1.65203 1.37620 0.92285 0.91611 0.91864 0.87856 0.88002 0.83342 0.83038 0.88380 0.89939 0.76040 0.88680 0.88268 0.87852 0.90295 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.19 37.16 0.38 -0.29 16 2 C -0.14 -1.02 6.11 -90.59 -0.55 -1.58 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.17 -1.21 9.82 -26.70 -0.26 -1.47 16 5 C -0.08 -0.64 5.95 -91.77 -0.55 -1.19 16 6 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 7 C 0.03 0.27 6.80 -35.62 -0.24 0.03 16 8 C -0.21 -2.07 10.81 -39.70 -0.43 -2.50 16 9 C -0.18 -1.97 10.81 -39.70 -0.43 -2.40 16 10 C -0.03 -0.37 6.69 -35.62 -0.24 -0.60 16 11 C 0.20 2.64 6.20 -5.19 -0.03 2.61 16 12 N -0.73 -11.11 5.50 -62.41 -0.34 -11.45 16 13 C 0.57 11.06 7.77 -12.31 -0.10 10.97 16 14 O -0.55 -12.11 16.33 5.32 0.09 -12.02 16 15 C -0.11 -2.30 5.87 -105.04 -0.62 -2.92 16 16 C -0.22 -4.20 9.55 -38.92 -0.37 -4.57 16 17 C -0.08 -1.69 10.01 -39.72 -0.40 -2.09 16 18 C -0.22 -5.15 7.17 -38.81 -0.28 -5.42 16 19 C 0.08 2.04 5.10 -106.87 -0.55 1.50 16 20 C -0.44 -11.83 9.57 -37.73 -0.36 -12.20 16 21 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 22 C 0.08 2.14 5.40 -17.34 -0.09 2.05 16 23 N -0.80 -21.08 13.93 55.55 0.77 -20.31 16 24 Si 0.91 20.29 24.52 -169.99 -4.17 16.12 16 25 H -0.27 -5.76 6.71 56.52 0.38 -5.38 16 26 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.24 -5.55 6.86 56.52 0.39 -5.17 16 28 C -0.13 -3.23 9.34 -38.44 -0.36 -3.59 16 29 O -0.17 -2.07 10.36 5.70 0.06 -2.01 16 30 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 34 H 0.10 0.87 7.96 -51.93 -0.41 0.46 16 35 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.40 5.54 6.48 -40.82 -0.26 5.28 16 40 H 0.10 1.52 6.38 -52.49 -0.33 1.19 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.10 2.38 4.72 -52.48 -0.25 2.13 16 43 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 44 H 0.12 2.83 7.64 -52.48 -0.40 2.43 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -29.45 372.98 -9.33 -38.78 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.89 Total: 8.92 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -5.47 Total: -23.66 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.43 Total: -31.76 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.15 Total: -14.03 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.17 Total: 16.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.45 -9.33 -38.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077698950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.690 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds