Wall clock time and date at job start Tue Mar 31 2020 16:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 115.54662 * 2 1 4 4 C 1.53068 * 117.51235 * 145.72414 * 2 1 3 5 5 C 1.52993 * 117.49654 * 214.33455 * 2 1 3 6 6 H 1.09003 * 117.50463 * 359.97438 * 5 2 1 7 7 C 1.50705 * 117.49716 * 144.99818 * 5 2 1 8 8 C 1.34511 * 125.78679 * 239.90706 * 7 5 2 9 9 C 1.41385 * 106.83825 * 179.79617 * 8 7 5 10 10 C 1.34511 * 106.84107 * 0.36935 * 9 8 7 11 11 C 1.50702 * 125.79133 * 179.88851 * 10 9 8 12 12 N 1.46503 * 109.47060 * 89.69659 * 11 10 9 13 13 C 1.34773 * 120.00378 * 180.02562 * 12 11 10 14 14 O 1.21553 * 119.99586 * 359.97438 * 13 12 11 15 15 C 1.47888 * 120.00132 * 180.02562 * 13 12 11 16 16 C 1.39914 * 120.02242 * 359.72582 * 15 13 12 17 17 C 1.38332 * 120.35455 * 179.72074 * 16 15 13 18 18 C 1.37759 * 120.41129 * 0.55357 * 17 16 15 19 19 C 1.40747 * 120.03818 * 359.72308 * 18 17 16 20 20 C 1.41434 * 120.17816 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00458 * 150.17695 * 20 19 18 22 22 C 1.39939 * 119.99790 * 330.17568 * 20 19 18 23 23 N 1.30833 * 120.00105 * 161.73544 * 22 20 19 24 24 Si 1.86799 * 120.00017 * 341.73019 * 22 20 19 25 25 H 1.48498 * 109.47074 * 95.41545 * 24 22 20 26 26 H 1.48499 * 109.47150 * 215.41620 * 24 22 20 27 27 H 1.48505 * 109.47104 * 335.41379 * 24 22 20 28 28 C 1.38993 * 120.02154 * 179.97438 * 15 13 12 29 29 O 1.34299 * 125.78685 * 59.93823 * 7 5 2 30 30 H 1.09006 * 109.47163 * 205.66675 * 1 2 3 31 31 H 1.08998 * 109.47438 * 325.66624 * 1 2 3 32 32 H 1.09006 * 109.47319 * 85.67078 * 1 2 3 33 33 H 1.09000 * 117.49329 * 359.97438 * 4 2 1 34 34 H 1.09004 * 117.51329 * 214.95694 * 4 2 1 35 35 H 1.07993 * 126.58479 * 0.04501 * 8 7 5 36 36 H 1.08007 * 126.57909 * 180.24345 * 9 8 7 37 37 H 1.08997 * 109.47155 * 329.69912 * 11 10 9 38 38 H 1.08998 * 109.47288 * 209.69630 * 11 10 9 39 39 H 0.97000 * 119.99875 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.82540 * 359.97081 * 16 15 13 41 41 H 1.08002 * 119.79909 * 180.25898 * 17 16 15 42 42 H 1.08003 * 119.97966 * 179.70110 * 18 17 16 43 43 H 0.96998 * 120.00003 * 179.97438 * 23 22 20 44 44 H 1.08003 * 120.20760 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1218 0.7646 5 6 2.2364 -1.1206 -0.7654 6 1 1.6112 -1.8582 -1.2687 7 6 3.5289 -0.7803 -1.4616 8 6 3.7637 -0.8891 -2.7816 9 6 5.0942 -0.4621 -2.9974 10 6 5.5954 -0.1258 -1.7954 11 6 6.9886 0.3855 -1.5331 12 7 6.9993 1.8470 -1.6335 13 6 8.1457 2.5277 -1.4365 14 8 9.1707 1.9289 -1.1750 15 6 8.1564 4.0031 -1.5374 16 6 6.9778 4.6924 -1.8430 17 6 6.9787 6.0728 -1.9333 18 6 8.1418 6.7838 -1.7349 19 6 9.3383 6.1073 -1.4323 20 6 10.5340 6.8344 -1.2274 21 1 11.2927 6.4498 -0.5619 22 6 10.7340 8.0522 -1.8870 23 7 11.6380 8.8916 -1.4511 24 14 9.7105 8.4794 -3.3901 25 1 8.5494 9.3088 -2.9789 26 1 10.5436 9.2388 -4.3568 27 1 9.2249 7.2302 -4.0296 28 6 9.3384 4.7055 -1.3338 29 8 4.6418 -0.3177 -0.8692 30 1 -0.3634 -0.9263 0.4451 31 1 -0.3634 0.8486 0.5796 32 1 -0.3634 0.0776 -1.0248 33 1 1.6120 -1.8594 1.2678 34 1 3.1724 -0.8765 1.2677 35 1 3.0682 -1.2324 -3.5329 36 1 5.6099 -0.4168 -3.9454 37 1 7.6742 -0.0343 -2.2691 38 1 7.3026 0.0878 -0.5327 39 1 6.1815 2.3248 -1.8426 40 1 6.0616 4.1442 -2.0052 41 1 6.0630 6.5960 -2.1656 42 1 8.1356 7.8611 -1.8119 43 1 11.7769 9.7355 -1.9086 44 1 10.2513 4.1773 -1.1012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077698950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:39 Heat of formation + Delta-G solvation = -1.277279 kcal Electronic energy + Delta-G solvation = -25611.954558 eV Core-core repulsion = 21881.376267 eV Total energy + Delta-G solvation = -3730.578290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.70637 -41.03979 -39.11539 -38.68119 -36.20346 -35.56923 -34.04557 -32.80918 -31.90935 -31.32962 -29.43712 -27.49094 -26.81010 -24.57068 -23.24425 -22.82226 -22.47143 -21.69608 -21.68706 -20.92965 -19.81211 -18.36612 -17.84531 -17.58801 -17.18221 -16.74384 -16.49870 -16.40985 -15.82330 -15.47435 -15.40081 -15.01981 -14.60572 -14.58063 -14.45808 -14.27322 -13.92597 -13.83892 -13.80361 -13.35989 -13.29016 -12.99596 -12.85175 -12.79963 -12.68839 -12.38485 -12.32976 -11.78176 -11.59656 -11.58039 -11.27500 -11.03105 -10.99612 -10.79264 -10.33631 -9.65277 -9.59027 -9.28155 -8.92502 -6.56448 0.14024 0.46443 0.72241 1.25256 1.41214 1.47688 1.48240 1.72125 1.90238 2.11893 2.31506 2.63115 2.85903 3.33482 3.43268 3.61161 3.82714 3.86311 3.87436 4.06694 4.12527 4.23490 4.36619 4.38240 4.40221 4.44530 4.58912 4.69201 4.81662 4.86475 4.88098 4.89436 4.95488 4.98822 5.06223 5.11187 5.12949 5.20197 5.21903 5.40328 5.40359 5.52487 5.61887 5.69316 5.82973 6.07439 6.13191 6.28057 6.44927 6.63912 6.72871 7.11270 8.16357 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002339 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.104375 B =11968.326149 C =12585.351089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 H 0.091 0.909 4 C -0.167 4.167 5 C -0.087 4.087 6 H 0.158 0.842 7 C 0.020 3.980 8 C -0.212 4.212 9 C -0.174 4.174 10 C -0.052 4.052 11 C 0.206 3.794 12 N -0.711 5.711 13 C 0.567 3.433 14 O -0.580 6.580 15 C -0.112 4.112 16 C -0.184 4.184 17 C -0.082 4.082 18 C -0.224 4.224 19 C 0.065 3.935 20 C -0.487 4.487 21 H 0.051 0.949 22 C 0.044 3.956 23 N -0.847 5.847 24 Si 0.967 3.033 25 H -0.247 1.247 26 H -0.277 1.277 27 H -0.251 1.251 28 C -0.164 4.164 29 O -0.186 6.186 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.413 0.587 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.295 0.705 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.974 -17.679 -3.370 30.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.156 4.156 3 H 0.110 0.890 4 C -0.204 4.204 5 C -0.104 4.104 6 H 0.176 0.824 7 C -0.030 4.030 8 C -0.231 4.231 9 C -0.194 4.194 10 C -0.101 4.101 11 C 0.084 3.916 12 N -0.364 5.364 13 C 0.356 3.644 14 O -0.461 6.461 15 C -0.115 4.115 16 C -0.204 4.204 17 C -0.099 4.099 18 C -0.244 4.244 19 C 0.062 3.938 20 C -0.516 4.516 21 H 0.069 0.931 22 C -0.170 4.170 23 N -0.473 5.473 24 Si 0.789 3.211 25 H -0.171 1.171 26 H -0.204 1.204 27 H -0.175 1.175 28 C -0.185 4.185 29 O -0.084 6.084 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.191 0.809 36 H 0.185 0.815 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.028 -17.849 -2.836 30.066 hybrid contribution 0.560 0.667 -0.354 0.940 sum -23.468 -17.181 -3.190 29.260 Atomic orbital electron populations 1.21398 0.90351 1.03102 1.02843 1.22557 0.96754 0.93917 1.02416 0.89045 1.23257 1.02885 1.02018 0.92265 1.20853 0.91060 1.04042 0.94478 0.82447 1.22024 0.87261 1.01414 0.92348 1.21821 0.97558 1.08012 0.95686 1.21967 0.95830 1.03263 0.98374 1.22088 0.91383 1.08777 0.87866 1.19548 0.88596 0.79609 1.03877 1.45851 1.11478 1.06907 1.72197 1.18561 0.82877 0.87635 0.75300 1.90703 1.34132 1.71066 1.50174 1.19634 0.95425 0.91290 1.05195 1.20957 0.96403 0.94326 1.08673 1.21026 0.97487 0.94084 0.97351 1.21391 0.93222 0.98940 1.10802 1.17788 0.93293 0.91733 0.90939 1.19455 1.02924 1.03700 1.25525 0.93096 1.26918 0.95748 0.93711 1.00639 1.69724 1.31030 1.08338 1.38241 0.85464 0.78394 0.79810 0.77386 1.17148 1.20373 1.17456 1.21210 0.96744 0.93424 1.07086 1.83933 1.20319 1.65807 1.38315 0.91052 0.91507 0.91223 0.85831 0.89844 0.80942 0.81534 0.87516 0.90604 0.74856 0.83922 0.83569 0.87493 0.89404 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.19 71.98 0.73 -0.21 16 2 C -0.14 -1.72 6.11 -10.77 -0.07 -1.79 16 3 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.17 -2.12 9.82 30.62 0.30 -1.82 16 5 C -0.09 -1.11 5.95 -11.54 -0.07 -1.18 16 6 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 7 C 0.02 0.37 6.80 24.83 0.17 0.54 16 8 C -0.21 -3.55 10.81 22.19 0.24 -3.31 16 9 C -0.17 -3.24 10.81 22.19 0.24 -3.00 16 10 C -0.05 -1.13 6.69 24.83 0.17 -0.97 16 11 C 0.21 5.04 6.20 85.63 0.53 5.57 16 12 N -0.71 -19.95 5.50 -469.66 -2.58 -22.53 16 13 C 0.57 21.65 7.77 86.80 0.67 22.32 16 14 O -0.58 -26.20 16.33 -3.88 -0.06 -26.26 16 15 C -0.11 -4.67 5.87 -20.14 -0.12 -4.79 16 16 C -0.18 -6.39 9.55 22.70 0.22 -6.17 16 17 C -0.08 -2.98 10.01 22.18 0.22 -2.75 16 18 C -0.22 -10.08 7.17 22.77 0.16 -9.91 16 19 C 0.06 3.37 5.10 -21.32 -0.11 3.26 16 20 C -0.49 -28.03 9.57 23.47 0.22 -27.81 16 21 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 22 C 0.04 2.40 5.40 85.25 0.46 2.86 16 23 N -0.85 -46.81 13.93 21.83 0.30 -46.51 16 24 Si 0.97 41.67 24.52 68.60 1.68 43.35 16 25 H -0.25 -9.66 6.71 99.48 0.67 -8.99 16 26 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.25 -10.98 6.86 99.48 0.68 -10.29 16 28 C -0.16 -8.20 9.34 23.01 0.21 -7.98 16 29 O -0.19 -4.31 10.36 -2.52 -0.03 -4.33 16 30 H 0.07 0.40 7.90 -2.38 -0.02 0.38 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.47 8.14 -2.38 -0.02 0.46 16 33 H 0.12 1.03 8.05 -2.39 -0.02 1.01 16 34 H 0.08 1.37 7.96 -2.39 -0.02 1.35 16 35 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.41 9.78 6.48 -92.71 -0.60 9.18 16 40 H 0.14 3.64 6.38 -2.91 -0.02 3.62 16 41 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.11 4.71 4.72 -2.91 -0.01 4.70 16 43 H 0.30 14.53 8.30 -92.71 -0.77 13.76 16 44 H 0.09 4.92 7.64 -2.91 -0.02 4.89 16 Total: -1.00 -68.62 372.98 3.87 -64.75 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.37 Total: 28.67 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 4.19 Total: -37.14 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -2.28 Total: -69.03 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.09 Total: -30.59 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.68 Total: 43.35 kcal Total: -68.62 3.87 -64.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077698950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.471 kcal (2) G-P(sol) polarization free energy of solvation -68.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds