Wall clock time and date at job start Tue Mar 31 2020 14:22:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52992 * 109.47228 * 2 1
4 4 H 1.09000 * 109.47240 * 304.99999 * 3 2 1
5 5 C 1.52999 * 109.47482 * 65.00041 * 3 2 1
6 6 C 1.53004 * 109.47127 * 185.00377 * 3 2 1
7 7 C 1.52999 * 109.47291 * 175.00001 * 6 3 2
8 8 H 1.09002 * 109.47149 * 54.99704 * 7 6 3
9 9 C 1.53004 * 109.47302 * 174.99634 * 7 6 3
10 10 N 1.46500 * 109.47114 * 294.99550 * 7 6 3
11 11 S 1.65605 * 119.99724 * 144.99829 * 10 7 6
12 12 O 1.42105 * 106.39941 * 178.54357 * 11 10 7
13 13 O 1.42098 * 106.40236 * 311.46138 * 11 10 7
14 14 C 1.76199 * 107.21701 * 65.00452 * 11 10 7
15 15 C 1.38635 * 119.74798 * 269.72539 * 14 11 10
16 16 C 1.37619 * 120.25026 * 179.72153 * 15 14 11
17 17 C 1.40717 * 119.74014 * 0.57634 * 16 15 14
18 18 C 1.41396 * 120.24497 * 179.68564 * 17 16 15
19 19 H 1.08005 * 119.99895 * 24.40146 * 18 17 16
20 20 C 1.39943 * 119.99969 * 204.40822 * 18 17 16
21 21 N 1.30818 * 120.00214 * 17.84586 * 20 18 17
22 22 Si 1.86804 * 119.99708 * 197.84954 * 20 18 17
23 23 H 1.48509 * 109.46989 * 90.00156 * 22 20 18
24 24 H 1.48501 * 109.47004 * 209.99677 * 22 20 18
25 25 H 1.48489 * 109.47329 * 330.00099 * 22 20 18
26 26 C 1.40712 * 119.51390 * 359.69461 * 17 16 15
27 27 C 1.37615 * 119.74404 * 0.02562 * 26 17 16
28 28 H 1.09000 * 109.47338 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.46486 * 300.00522 * 1 2 3
30 30 H 1.08999 * 109.46849 * 59.99568 * 1 2 3
31 31 H 1.09004 * 109.46871 * 240.00252 * 2 1 3
32 32 H 1.08999 * 109.46849 * 120.00432 * 2 1 3
33 33 H 1.09000 * 109.46917 * 59.99760 * 5 3 2
34 34 H 1.09000 * 109.47332 * 179.97438 * 5 3 2
35 35 H 1.08997 * 109.46840 * 300.00248 * 5 3 2
36 36 H 1.09006 * 109.46952 * 294.99883 * 6 3 2
37 37 H 1.08997 * 109.47323 * 54.99875 * 6 3 2
38 38 H 1.09003 * 109.47108 * 300.00008 * 9 7 6
39 39 H 1.09002 * 109.46961 * 59.99955 * 9 7 6
40 40 H 1.08991 * 109.47028 * 180.02562 * 9 7 6
41 41 H 0.96989 * 120.00116 * 325.00559 * 10 7 6
42 42 H 1.08008 * 119.87612 * 359.97438 * 15 14 11
43 43 H 1.08001 * 120.13286 * 180.27455 * 16 15 14
44 44 H 0.97000 * 119.99956 * 180.02562 * 21 20 18
45 45 H 1.08000 * 120.13032 * 179.97438 * 26 17 16
46 46 H 1.08001 * 119.87891 * 179.97438 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 -0.8418
5 6 1.6354 2.1265 1.3073
6 6 3.5649 1.4442 -0.1258
7 6 4.0646 2.8848 -0.2512
8 1 3.6973 3.4714 0.5909
9 6 5.5946 2.8958 -0.2515
10 7 3.5719 3.4654 -1.5028
11 16 3.1666 5.0698 -1.5681
12 8 2.7642 5.3278 -2.9063
13 8 2.3336 5.3193 -0.4443
14 6 4.6448 5.9923 -1.3064
15 6 5.0116 6.3532 -0.0191
16 6 6.1670 7.0687 0.1977
17 6 6.9707 7.4444 -0.8945
18 6 8.1566 8.1854 -0.6846
19 1 8.6624 8.1363 0.2684
20 6 8.6746 8.9825 -1.7116
21 7 7.9149 9.3258 -2.7197
22 14 10.4511 9.5560 -1.6430
23 1 11.3199 8.5577 -2.3168
24 1 10.5754 10.8656 -2.3321
25 1 10.8702 9.7006 -0.2258
26 6 6.5856 7.0774 -2.1972
27 6 5.4292 6.3568 -2.3898
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3632 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8899
31 1 1.8934 -0.5138 -0.8901
32 1 1.8933 -0.5139 0.8899
33 1 2.0700 1.5875 2.1491
34 1 1.9991 3.1541 1.3075
35 1 0.5491 2.1252 1.3969
36 1 4.0031 0.9834 0.7596
37 1 3.8571 0.8799 -1.0114
38 1 5.9613 2.4638 0.6797
39 1 5.9620 2.3092 -1.0936
40 1 5.9506 3.9221 -0.3404
41 1 3.4830 2.9102 -2.2930
42 1 4.3904 6.0683 0.8172
43 1 6.4532 7.3451 1.2017
44 1 8.2741 9.8780 -3.4317
45 1 7.1949 7.3608 -3.0428
46 1 5.1313 6.0744 -3.3888
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000081300391.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:22:25
Heat of formation + Delta-G solvation = -97.292068 kcal
Electronic energy + Delta-G solvation = -26182.407268 eV
Core-core repulsion = 22583.109416 eV
Total energy + Delta-G solvation = -3599.297853 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.150 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-38.19277 -37.57336 -36.41887 -35.08564 -35.05447 -34.03317 -30.62012 -30.26416
-29.51969 -29.21836 -26.76044 -25.79591 -23.92149 -21.49151 -21.23871 -20.96556
-19.85564 -18.95966 -17.62292 -17.17692 -16.51809 -15.76203 -15.38716 -15.21410
-14.90231 -14.49319 -14.11282 -13.87388 -13.43868 -13.20456 -13.15072 -12.91697
-12.62976 -12.46009 -12.25594 -12.17974 -12.01586 -11.79572 -11.65530 -11.45053
-11.43798 -11.36962 -11.27279 -11.21073 -11.05730 -11.03239 -10.85502 -10.60012
-10.51339 -10.40437 -10.16948 -9.75311 -9.63103 -9.47682 -9.01113 -7.94682
-7.69176 -7.13537 -4.79652 1.30485 2.26454 2.87708 2.90488 2.92502
2.93501 3.66002 3.76836 4.25247 4.52303 4.63677 4.82738 4.85705
5.14399 5.20098 5.21525 5.35246 5.38911 5.46832 5.56045 5.58023
5.71577 5.75783 5.81777 5.88029 5.93333 6.01825 6.04045 6.06868
6.09659 6.13573 6.17774 6.36771 6.43957 6.56265 6.59959 6.68694
6.71796 6.93063 7.05125 7.33425 7.37870 7.44266 7.64756 7.77442
7.97438 8.32704 8.51900 8.65516 9.78002
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.025866 B = 0.003068 C = 0.002938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1082.258130 B = 9123.654243 C = 9527.393609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.119 4.119
3 C -0.095 4.095
4 H 0.073 0.927
5 C -0.156 4.156
6 C -0.116 4.116
7 C 0.150 3.850
8 H 0.091 0.909
9 C -0.177 4.177
10 N -1.119 6.119
11 S 2.691 3.309
12 O -0.987 6.987
13 O -0.985 6.985
14 C -0.785 4.785
15 C 0.002 3.998
16 C -0.238 4.238
17 C 0.140 3.860
18 C -0.437 4.437
19 H 0.087 0.913
20 C 0.072 3.928
21 N -0.765 5.765
22 Si 0.917 3.083
23 H -0.263 1.263
24 H -0.274 1.274
25 H -0.258 1.258
26 C -0.184 4.184
27 C -0.013 4.013
28 H 0.049 0.951
29 H 0.057 0.943
30 H 0.053 0.947
31 H 0.058 0.942
32 H 0.059 0.941
33 H 0.050 0.950
34 H 0.069 0.931
35 H 0.054 0.946
36 H 0.072 0.928
37 H 0.066 0.934
38 H 0.060 0.940
39 H 0.057 0.943
40 H 0.077 0.923
41 H 0.408 0.592
42 H 0.103 0.897
43 H 0.099 0.901
44 H 0.289 0.711
45 H 0.121 0.879
46 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.316 -13.653 3.569 14.757
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.156 4.156
3 C -0.114 4.114
4 H 0.091 0.909
5 C -0.213 4.213
6 C -0.155 4.155
7 C 0.043 3.957
8 H 0.109 0.891
9 C -0.236 4.236
10 N -0.875 5.875
11 S 2.790 3.210
12 O -0.978 6.978
13 O -0.975 6.975
14 C -0.881 4.881
15 C -0.018 4.018
16 C -0.259 4.259
17 C 0.137 3.863
18 C -0.464 4.464
19 H 0.105 0.895
20 C -0.150 4.150
21 N -0.387 5.387
22 Si 0.740 3.260
23 H -0.188 1.188
24 H -0.199 1.199
25 H -0.182 1.182
26 C -0.205 4.205
27 C -0.034 4.034
28 H 0.068 0.932
29 H 0.076 0.924
30 H 0.072 0.928
31 H 0.077 0.923
32 H 0.078 0.922
33 H 0.069 0.931
34 H 0.088 0.912
35 H 0.073 0.927
36 H 0.091 0.909
37 H 0.085 0.915
38 H 0.079 0.921
39 H 0.076 0.924
40 H 0.096 0.904
41 H 0.241 0.759
42 H 0.121 0.879
43 H 0.117 0.883
44 H 0.100 0.900
45 H 0.139 0.861
46 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -5.211 -13.089 3.370 14.485
hybrid contribution 1.525 0.268 -0.339 1.585
sum -3.686 -12.820 3.031 13.680
Atomic orbital electron populations
1.21834 0.96135 1.01145 1.02115 1.21579 0.95796 0.96624 1.01610
1.21181 0.95291 0.95702 0.99184 0.90864 1.21983 1.01289 1.01558
0.96452 1.21924 0.95393 0.95868 1.02356 1.20770 0.93843 0.94981
0.86088 0.89076 1.22400 0.95286 1.04264 1.01673 1.55801 1.84080
1.29100 1.18549 1.01251 0.74891 0.72184 0.72696 1.93493 1.82658
1.84151 1.37511 1.93475 1.65998 1.84403 1.53606 1.29138 1.26963
1.31617 1.00391 1.20133 0.94667 0.93554 0.93458 1.21010 0.97578
1.09371 0.97930 1.17839 0.90299 0.86617 0.91592 1.19938 1.06367
1.20702 0.99388 0.89476 1.26138 1.00194 0.94603 0.94102 1.69825
1.36663 1.24343 1.07887 0.86150 0.81074 0.78649 0.80091 1.18826
1.19880 1.18208 1.21334 0.98280 1.02989 0.97855 1.20236 0.93419
0.94516 0.95192 0.93182 0.92417 0.92776 0.92274 0.92200 0.93058
0.91240 0.92725 0.90894 0.91503 0.92142 0.92434 0.90387 0.75915
0.87946 0.88275 0.89955 0.86074 0.88015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.34 9.67 37.16 0.36 -0.98 16
2 C -0.12 -1.05 5.40 -26.73 -0.14 -1.20 16
3 C -0.10 -1.01 2.33 -90.62 -0.21 -1.22 16
4 H 0.07 0.87 7.62 -51.93 -0.40 0.47 16
5 C -0.16 -1.75 8.71 37.16 0.32 -1.43 16
6 C -0.12 -1.19 4.28 -26.73 -0.11 -1.30 16
7 C 0.15 1.93 2.77 -67.93 -0.19 1.74 16
8 H 0.09 1.26 5.70 -51.93 -0.30 0.96 16
9 C -0.18 -2.31 9.52 37.16 0.35 -1.95 16
10 N -1.12 -16.04 4.84 -4.89 -0.02 -16.06 16
11 S 2.69 51.26 5.71 -107.50 -0.61 50.64 16
12 O -0.99 -21.39 17.26 -57.17 -0.99 -22.38 16
13 O -0.98 -20.34 16.59 -57.17 -0.95 -21.28 16
14 C -0.79 -16.91 5.08 -39.29 -0.20 -17.11 16
15 C 0.00 0.04 8.57 -39.66 -0.34 -0.30 16
16 C -0.24 -5.50 9.80 -38.87 -0.38 -5.88 16
17 C 0.14 3.50 5.58 -106.83 -0.60 2.90 16
18 C -0.44 -10.60 9.05 -37.74 -0.34 -10.95 16
19 H 0.09 2.00 7.91 -52.48 -0.41 1.58 16
20 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16
21 N -0.76 -18.36 10.95 55.55 0.61 -17.75 16
22 Si 0.92 16.97 29.60 -169.99 -5.03 11.94 16
23 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16
24 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16
25 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16
26 C -0.18 -4.57 8.70 -38.88 -0.34 -4.90 16
27 C -0.01 -0.31 9.49 -39.66 -0.38 -0.68 16
28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16
29 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16
30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.07 0.92 6.46 -51.93 -0.34 0.58 16
35 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16
36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
40 H 0.08 1.24 6.18 -51.93 -0.32 0.92 16
41 H 0.41 4.94 8.84 -34.47 -0.30 4.64 16
42 H 0.10 2.00 7.59 -52.48 -0.40 1.60 16
43 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16
44 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16
45 H 0.12 3.05 6.15 -52.49 -0.32 2.73 16
46 H 0.10 2.20 7.60 -52.49 -0.40 1.80 16
LS Contribution 377.18 15.07 5.68 5.68
Total: -1.00 -28.91 377.18 -10.83 -39.74
By element:
Atomic # 1 Polarization: 18.38 SS G_CDS: -7.23 Total: 11.15 kcal
Atomic # 6 Polarization: -39.40 SS G_CDS: -2.28 Total: -41.68 kcal
Atomic # 7 Polarization: -34.40 SS G_CDS: 0.58 Total: -33.81 kcal
Atomic # 8 Polarization: -41.73 SS G_CDS: -1.94 Total: -43.66 kcal
Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal
Atomic # 16 Polarization: 51.26 SS G_CDS: -0.61 Total: 50.64 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -28.91 -10.83 -39.74 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000081300391.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.551 kcal
(2) G-P(sol) polarization free energy of solvation -28.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.465 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds