Wall clock time and date at job start Tue Mar 31 2020 14:22:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52992 * 109.47228 * 2 1
4 4 H 1.09000 * 109.47240 * 304.99999 * 3 2 1
5 5 C 1.52999 * 109.47482 * 65.00041 * 3 2 1
6 6 C 1.53004 * 109.47127 * 185.00377 * 3 2 1
7 7 C 1.52999 * 109.47291 * 175.00001 * 6 3 2
8 8 H 1.09002 * 109.47149 * 54.99704 * 7 6 3
9 9 C 1.53004 * 109.47302 * 174.99634 * 7 6 3
10 10 N 1.46500 * 109.47114 * 294.99550 * 7 6 3
11 11 S 1.65605 * 119.99724 * 144.99829 * 10 7 6
12 12 O 1.42105 * 106.39941 * 178.54357 * 11 10 7
13 13 O 1.42098 * 106.40236 * 311.46138 * 11 10 7
14 14 C 1.76199 * 107.21701 * 65.00452 * 11 10 7
15 15 C 1.38635 * 119.74798 * 269.72539 * 14 11 10
16 16 C 1.37619 * 120.25026 * 179.72153 * 15 14 11
17 17 C 1.40717 * 119.74014 * 0.57634 * 16 15 14
18 18 C 1.41396 * 120.24497 * 179.68564 * 17 16 15
19 19 H 1.08005 * 119.99895 * 24.40146 * 18 17 16
20 20 C 1.39943 * 119.99969 * 204.40822 * 18 17 16
21 21 N 1.30818 * 120.00214 * 17.84586 * 20 18 17
22 22 Si 1.86804 * 119.99708 * 197.84954 * 20 18 17
23 23 H 1.48509 * 109.46989 * 90.00156 * 22 20 18
24 24 H 1.48501 * 109.47004 * 209.99677 * 22 20 18
25 25 H 1.48489 * 109.47329 * 330.00099 * 22 20 18
26 26 C 1.40712 * 119.51390 * 359.69461 * 17 16 15
27 27 C 1.37615 * 119.74404 * 0.02562 * 26 17 16
28 28 H 1.09000 * 109.47338 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.46486 * 300.00522 * 1 2 3
30 30 H 1.08999 * 109.46849 * 59.99568 * 1 2 3
31 31 H 1.09004 * 109.46871 * 240.00252 * 2 1 3
32 32 H 1.08999 * 109.46849 * 120.00432 * 2 1 3
33 33 H 1.09000 * 109.46917 * 59.99760 * 5 3 2
34 34 H 1.09000 * 109.47332 * 179.97438 * 5 3 2
35 35 H 1.08997 * 109.46840 * 300.00248 * 5 3 2
36 36 H 1.09006 * 109.46952 * 294.99883 * 6 3 2
37 37 H 1.08997 * 109.47323 * 54.99875 * 6 3 2
38 38 H 1.09003 * 109.47108 * 300.00008 * 9 7 6
39 39 H 1.09002 * 109.46961 * 59.99955 * 9 7 6
40 40 H 1.08991 * 109.47028 * 180.02562 * 9 7 6
41 41 H 0.96989 * 120.00116 * 325.00559 * 10 7 6
42 42 H 1.08008 * 119.87612 * 359.97438 * 15 14 11
43 43 H 1.08001 * 120.13286 * 180.27455 * 16 15 14
44 44 H 0.97000 * 119.99956 * 180.02562 * 21 20 18
45 45 H 1.08000 * 120.13032 * 179.97438 * 26 17 16
46 46 H 1.08001 * 119.87891 * 179.97438 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 -0.8418
5 6 1.6354 2.1265 1.3073
6 6 3.5649 1.4442 -0.1258
7 6 4.0646 2.8848 -0.2512
8 1 3.6973 3.4714 0.5909
9 6 5.5946 2.8958 -0.2515
10 7 3.5719 3.4654 -1.5028
11 16 3.1666 5.0698 -1.5681
12 8 2.7642 5.3278 -2.9063
13 8 2.3336 5.3193 -0.4443
14 6 4.6448 5.9923 -1.3064
15 6 5.0116 6.3532 -0.0191
16 6 6.1670 7.0687 0.1977
17 6 6.9707 7.4444 -0.8945
18 6 8.1566 8.1854 -0.6846
19 1 8.6624 8.1363 0.2684
20 6 8.6746 8.9825 -1.7116
21 7 7.9149 9.3258 -2.7197
22 14 10.4511 9.5560 -1.6430
23 1 11.3199 8.5577 -2.3168
24 1 10.5754 10.8656 -2.3321
25 1 10.8702 9.7006 -0.2258
26 6 6.5856 7.0774 -2.1972
27 6 5.4292 6.3568 -2.3898
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3632 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8899
31 1 1.8934 -0.5138 -0.8901
32 1 1.8933 -0.5139 0.8899
33 1 2.0700 1.5875 2.1491
34 1 1.9991 3.1541 1.3075
35 1 0.5491 2.1252 1.3969
36 1 4.0031 0.9834 0.7596
37 1 3.8571 0.8799 -1.0114
38 1 5.9613 2.4638 0.6797
39 1 5.9620 2.3092 -1.0936
40 1 5.9506 3.9221 -0.3404
41 1 3.4830 2.9102 -2.2930
42 1 4.3904 6.0683 0.8172
43 1 6.4532 7.3451 1.2017
44 1 8.2741 9.8780 -3.4317
45 1 7.1949 7.3608 -3.0428
46 1 5.1313 6.0744 -3.3888
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000081300391.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:22:24
Heat of formation + Delta-G solvation = -113.878595 kcal
Electronic energy + Delta-G solvation = -26183.126514 eV
Core-core repulsion = 22583.109416 eV
Total energy + Delta-G solvation = -3600.017099 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.150 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-39.41584 -39.10111 -38.05321 -36.75245 -36.04394 -35.76854 -32.06016 -31.59969
-31.28836 -30.21805 -27.71524 -27.51322 -24.73517 -23.27017 -22.96914 -22.03116
-20.67704 -20.42503 -19.41521 -18.72977 -18.12631 -17.26622 -16.86082 -16.10538
-16.02535 -15.76764 -15.69074 -15.18248 -14.95372 -14.70873 -14.16431 -14.08622
-13.97672 -13.91268 -13.58635 -13.54141 -13.21776 -13.09932 -13.02269 -12.91336
-12.87828 -12.77396 -12.63466 -12.56423 -12.41501 -12.08237 -11.97737 -11.90230
-11.53356 -11.45753 -11.31371 -11.26508 -11.17928 -11.07256 -10.28891 -9.75611
-9.51925 -8.86344 -6.63692 -0.25670 0.50596 1.07536 1.35584 1.43374
1.50935 2.11267 2.28554 2.56059 2.96829 3.54521 3.63174 3.72818
4.04243 4.06058 4.30051 4.30208 4.33920 4.36787 4.50040 4.55835
4.65202 4.75845 4.80817 4.88522 4.92952 4.95429 5.02676 5.03535
5.09700 5.12735 5.20564 5.25582 5.29226 5.30219 5.37217 5.41648
5.53259 5.54009 5.61316 5.64165 5.67455 5.78675 5.94512 6.17078
6.28788 6.50823 6.69884 6.82732 8.08839
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.025866 B = 0.003068 C = 0.002938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1082.258130 B = 9123.654243 C = 9527.393609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.114 4.114
3 C -0.098 4.098
4 H 0.057 0.943
5 C -0.157 4.157
6 C -0.109 4.109
7 C 0.145 3.855
8 H 0.082 0.918
9 C -0.176 4.176
10 N -1.102 6.102
11 S 2.719 3.281
12 O -1.012 7.012
13 O -0.998 6.998
14 C -0.790 4.790
15 C 0.004 3.996
16 C -0.254 4.254
17 C 0.114 3.886
18 C -0.467 4.467
19 H 0.092 0.908
20 C 0.033 3.967
21 N -0.801 5.801
22 Si 0.992 3.008
23 H -0.258 1.258
24 H -0.267 1.267
25 H -0.252 1.252
26 C -0.208 4.208
27 C -0.020 4.020
28 H 0.061 0.939
29 H 0.054 0.946
30 H 0.046 0.954
31 H 0.067 0.933
32 H 0.070 0.930
33 H 0.066 0.934
34 H 0.045 0.955
35 H 0.054 0.946
36 H 0.093 0.907
37 H 0.082 0.918
38 H 0.081 0.919
39 H 0.067 0.933
40 H 0.045 0.955
41 H 0.422 0.578
42 H 0.123 0.877
43 H 0.111 0.889
44 H 0.297 0.703
45 H 0.108 0.892
46 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.981 -15.596 4.284 16.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.151 4.151
3 C -0.116 4.116
4 H 0.075 0.925
5 C -0.215 4.215
6 C -0.148 4.148
7 C 0.039 3.961
8 H 0.100 0.900
9 C -0.235 4.235
10 N -0.863 5.863
11 S 2.815 3.185
12 O -1.003 7.003
13 O -0.988 6.988
14 C -0.883 4.883
15 C -0.016 4.016
16 C -0.274 4.274
17 C 0.110 3.890
18 C -0.494 4.494
19 H 0.110 0.890
20 C -0.186 4.186
21 N -0.424 5.424
22 Si 0.811 3.189
23 H -0.183 1.183
24 H -0.191 1.191
25 H -0.176 1.176
26 C -0.228 4.228
27 C -0.040 4.040
28 H 0.080 0.920
29 H 0.073 0.927
30 H 0.065 0.935
31 H 0.086 0.914
32 H 0.089 0.911
33 H 0.085 0.915
34 H 0.064 0.936
35 H 0.073 0.927
36 H 0.111 0.889
37 H 0.101 0.899
38 H 0.100 0.900
39 H 0.086 0.914
40 H 0.064 0.936
41 H 0.258 0.742
42 H 0.141 0.859
43 H 0.129 0.871
44 H 0.109 0.891
45 H 0.126 0.874
46 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -4.868 -15.020 4.085 16.309
hybrid contribution 1.280 0.764 -0.536 1.584
sum -3.589 -14.256 3.549 15.123
Atomic orbital electron populations
1.21853 0.96210 1.01781 1.01614 1.21542 0.95730 0.95322 1.02554
1.21199 0.95579 0.96723 0.98117 0.92462 1.21995 1.01402 1.00449
0.97611 1.21903 0.95019 0.93796 1.04074 1.20989 0.93844 0.96639
0.84666 0.89993 1.22376 0.95209 1.02566 1.03327 1.55368 1.83783
1.27091 1.20059 1.00409 0.73648 0.72841 0.71642 1.93455 1.82833
1.85191 1.38823 1.93459 1.65996 1.85247 1.54085 1.29589 1.27235
1.31535 0.99940 1.20373 0.94339 0.92650 0.94213 1.21229 0.98096
1.09917 0.98149 1.18171 0.91238 0.87445 0.92123 1.20223 1.06987
1.21720 1.00453 0.88960 1.27034 1.04291 0.94072 0.93194 1.69869
1.38686 1.25081 1.08742 0.85043 0.75260 0.78278 0.80302 1.18288
1.19123 1.17576 1.21337 0.99287 1.04444 0.97740 1.20403 0.93193
0.94186 0.96181 0.91992 0.92725 0.93532 0.91437 0.91097 0.91450
0.93601 0.92741 0.88866 0.89931 0.90030 0.91399 0.93606 0.74214
0.85877 0.87117 0.89149 0.87373 0.87195
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.39 9.67 71.98 0.70 -1.70 16
2 C -0.11 -1.69 5.40 30.59 0.17 -1.53 16
3 C -0.10 -1.84 2.33 -10.80 -0.03 -1.87 16
4 H 0.06 1.26 7.62 -2.39 -0.02 1.25 16
5 C -0.16 -3.27 8.71 71.98 0.63 -2.64 16
6 C -0.11 -1.88 4.28 30.60 0.13 -1.75 16
7 C 0.15 3.45 2.77 44.99 0.12 3.57 16
8 H 0.08 2.15 5.70 -2.39 -0.01 2.13 16
9 C -0.18 -4.26 9.52 71.98 0.69 -3.57 16
10 N -1.10 -30.06 4.84 -169.38 -0.82 -30.88 16
11 S 2.72 102.19 5.71 -56.49 -0.32 101.87 16
12 O -1.01 -43.49 17.26 -128.00 -2.21 -45.70 16
13 O -1.00 -40.60 16.59 -128.00 -2.12 -42.72 16
14 C -0.79 -34.23 5.08 22.46 0.11 -34.12 16
15 C 0.00 0.17 8.57 22.22 0.19 0.36 16
16 C -0.25 -11.92 9.80 22.73 0.22 -11.70 16
17 C 0.11 5.86 5.58 -21.29 -0.12 5.74 16
18 C -0.47 -23.26 9.05 23.46 0.21 -23.05 16
19 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16
20 C 0.03 1.54 5.14 85.26 0.44 1.98 16
21 N -0.80 -39.47 10.95 21.83 0.24 -39.23 16
22 Si 0.99 34.72 29.60 68.60 2.03 36.75 16
23 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16
24 H -0.27 -8.94 7.11 99.48 0.71 -8.24 16
25 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16
26 C -0.21 -10.70 8.70 22.73 0.20 -10.50 16
27 C -0.02 -0.92 9.49 22.22 0.21 -0.71 16
28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
29 H 0.05 0.85 6.56 -2.39 -0.02 0.84 16
30 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16
31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16
32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
34 H 0.04 1.17 6.46 -2.39 -0.02 1.15 16
35 H 0.05 1.10 6.56 -2.39 -0.02 1.09 16
36 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16
37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16
39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
40 H 0.04 1.42 6.18 -2.39 -0.01 1.41 16
41 H 0.42 9.42 8.84 -96.75 -0.85 8.57 16
42 H 0.12 4.74 7.59 -2.91 -0.02 4.71 16
43 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16
44 H 0.30 13.08 8.30 -92.71 -0.77 12.31 16
45 H 0.11 5.74 6.15 -2.91 -0.02 5.72 16
46 H 0.11 4.87 7.60 -2.91 -0.02 4.85 16
Total: -1.00 -63.24 377.18 0.79 -62.45
By element:
Atomic # 1 Polarization: 38.82 SS G_CDS: 0.12 Total: 38.94 kcal
Atomic # 6 Polarization: -85.35 SS G_CDS: 3.87 Total: -81.48 kcal
Atomic # 7 Polarization: -69.52 SS G_CDS: -0.58 Total: -70.11 kcal
Atomic # 8 Polarization: -84.08 SS G_CDS: -4.33 Total: -88.42 kcal
Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.75 kcal
Atomic # 16 Polarization: 102.19 SS G_CDS: -0.32 Total: 101.87 kcal
Total: -63.24 0.79 -62.45 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000081300391.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.427 kcal
(2) G-P(sol) polarization free energy of solvation -63.237 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.664 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.451 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.879 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds