Wall clock time and date at job start Tue Mar 31 2020 14:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47066 * 2 1 4 4 H 1.09000 * 109.47077 * 177.96704 * 3 2 1 5 5 C 1.50703 * 109.46992 * 57.96789 * 3 2 1 6 6 H 1.08001 * 119.99337 * 239.99843 * 5 3 2 7 7 C 1.37872 * 120.00060 * 60.00089 * 5 3 2 8 8 N 1.31512 * 119.99956 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99894 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47226 * 59.99957 * 9 7 5 11 11 H 1.48499 * 109.47170 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47090 * 300.00076 * 9 7 5 13 13 N 1.46901 * 109.47042 * 297.96785 * 3 2 1 14 14 C 1.46903 * 110.99749 * 273.74627 * 13 3 2 15 15 C 1.50693 * 109.47051 * 174.82737 * 14 13 3 16 16 C 1.38235 * 119.97235 * 260.00355 * 15 14 13 17 17 C 1.38502 * 120.07917 * 180.02562 * 16 15 14 18 18 O 1.36094 * 119.99512 * 180.02562 * 17 16 15 19 19 C 1.42904 * 116.99724 * 359.97438 * 18 17 16 20 20 C 1.39188 * 120.01539 * 0.27327 * 17 16 15 21 21 O 1.35982 * 120.03704 * 179.72647 * 20 17 16 22 22 C 1.42898 * 117.00706 * 180.02562 * 21 20 17 23 23 C 1.38462 * 119.93568 * 359.49364 * 20 17 16 24 24 C 1.38886 * 119.96685 * 80.02508 * 15 14 13 25 25 S 1.76202 * 120.00428 * 359.95593 * 24 15 14 26 26 C 1.81400 * 102.99598 * 180.02562 * 25 24 15 27 27 H 1.09004 * 109.46801 * 174.44634 * 1 2 3 28 28 H 1.08994 * 109.46908 * 294.45246 * 1 2 3 29 29 H 1.09003 * 109.46591 * 54.45585 * 1 2 3 30 30 H 1.08998 * 109.46932 * 239.99839 * 2 1 3 31 31 H 1.08998 * 109.46982 * 120.00070 * 2 1 3 32 32 H 0.97001 * 119.99573 * 180.02562 * 8 7 5 33 33 H 1.00901 * 110.99626 * 149.79757 * 13 3 2 34 34 H 1.09003 * 109.46849 * 54.83269 * 14 13 3 35 35 H 1.08995 * 109.47405 * 294.83378 * 14 13 3 36 36 H 1.08000 * 119.95673 * 0.02562 * 16 15 14 37 37 H 1.09003 * 109.47094 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47026 * 60.00409 * 19 18 17 39 39 H 1.09000 * 109.46787 * 300.00283 * 19 18 17 40 40 H 1.09007 * 109.47157 * 59.99526 * 22 21 20 41 41 H 1.08994 * 109.47823 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.47105 * 300.00338 * 22 21 20 43 43 H 1.07997 * 120.04589 * 180.25308 * 23 20 17 44 44 H 1.08997 * 109.47466 * 299.99841 * 26 25 24 45 45 H 1.08996 * 109.47436 * 60.00315 * 26 25 24 46 46 H 1.09009 * 109.46980 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4970 2.1673 1.2045 6 1 0.8799 3.0440 1.0742 7 6 1.7879 1.7111 2.4727 8 7 2.5389 0.6433 2.6311 9 14 1.1153 2.6100 3.9657 10 1 -0.3689 2.6103 3.9163 11 1 1.5687 1.9240 5.2022 12 1 1.6108 4.0099 3.9655 13 7 1.5909 2.1206 -1.2233 14 6 2.5281 1.8858 -2.3298 15 6 1.9727 2.4875 -3.5948 16 6 1.3419 1.6814 -4.5239 17 6 0.8310 2.2320 -5.6876 18 8 0.2098 1.4369 -6.6008 19 6 0.1209 0.0440 -6.2944 20 6 0.9574 3.5975 -5.9256 21 8 0.4609 4.1377 -7.0706 22 6 0.6268 5.5458 -7.2489 23 6 1.5849 4.4063 -4.9933 24 6 2.0955 3.8514 -3.8264 25 16 2.8994 4.8775 -2.6409 26 6 2.7997 6.5252 -3.3931 27 1 -0.3633 -1.0229 -0.0995 28 1 -0.3633 0.4254 0.9354 29 1 -0.3632 0.5974 -0.8362 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7433 0.3222 3.5234 33 1 1.4616 3.1083 -1.0624 34 1 2.6660 0.8133 -2.4676 35 1 3.4874 2.3486 -2.0979 36 1 1.2472 0.6210 -4.3420 37 1 -0.3960 -0.4736 -7.1025 38 1 -0.4333 -0.0890 -5.3652 39 1 1.1238 -0.3679 -6.1814 40 1 1.6893 5.7896 -7.2467 41 1 0.1868 5.8460 -8.1998 42 1 0.1308 6.0759 -6.4359 43 1 1.6803 5.4667 -5.1743 44 1 3.3114 6.5169 -4.3555 45 1 1.7539 6.7949 -3.5400 46 1 3.2736 7.2541 -2.7356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086506727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:16 Heat of formation + Delta-G solvation = -66.729165 kcal Electronic energy + Delta-G solvation = -26027.728219 eV Core-core repulsion = 22429.755673 eV Total energy + Delta-G solvation = -3597.972546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57844 -39.42537 -38.78441 -37.45772 -34.61844 -32.92201 -31.83092 -31.11707 -29.60921 -28.79125 -28.06866 -27.77761 -25.65345 -24.91279 -23.30187 -22.40853 -20.88627 -19.65147 -18.62274 -18.22427 -17.91417 -17.05835 -16.98122 -16.83236 -16.14363 -16.05136 -15.64771 -15.54849 -15.40694 -15.21059 -14.87784 -14.57845 -14.45543 -14.04364 -13.85663 -13.57209 -13.49962 -13.25241 -13.01287 -12.84721 -12.74144 -12.64254 -12.39528 -12.29840 -12.23246 -12.12536 -12.06238 -11.82883 -11.58723 -11.30179 -11.03510 -10.77888 -10.49929 -10.08047 -9.41016 -8.92394 -8.14673 -8.04839 -6.17181 0.14753 0.25785 0.60279 1.44029 1.45237 1.52358 1.53186 2.31047 2.35091 2.44522 2.53295 3.22997 3.64110 3.73388 3.99863 4.07543 4.16704 4.26198 4.29179 4.33938 4.38178 4.38940 4.43057 4.48006 4.60272 4.63706 4.69179 4.72451 4.76987 4.83158 4.83192 4.88982 4.97788 4.99818 5.33172 5.40527 5.42363 5.52525 5.60008 5.74904 5.85878 5.92731 6.07030 6.31389 6.52364 6.56266 6.81739 7.06026 7.50850 8.99117 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.003804 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.067182 B = 7359.460791 C = 8788.482257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.096 4.096 3 C 0.224 3.776 4 H -0.036 1.036 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.105 3.895 15 C -0.059 4.059 16 C -0.140 4.140 17 C 0.083 3.917 18 O -0.323 6.323 19 C 0.018 3.982 20 C 0.103 3.897 21 O -0.323 6.323 22 C 0.015 3.985 23 C -0.180 4.180 24 C -0.084 4.084 25 S -0.148 6.148 26 C -0.140 4.140 27 H 0.035 0.965 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.057 0.943 32 H 0.260 0.740 33 H 0.334 0.666 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.149 0.851 37 H 0.123 0.877 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.122 0.878 42 H 0.062 0.938 43 H 0.162 0.838 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 8.421 -19.946 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.115 3.885 4 H -0.019 1.019 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.301 5.301 14 C -0.025 4.025 15 C -0.065 4.065 16 C -0.161 4.161 17 C 0.036 3.964 18 O -0.237 6.237 19 C -0.077 4.077 20 C 0.056 3.944 21 O -0.237 6.237 22 C -0.079 4.079 23 C -0.204 4.204 24 C -0.197 4.197 25 S 0.093 5.907 26 C -0.308 4.308 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.140 0.860 42 H 0.081 0.919 43 H 0.179 0.821 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.956 7.594 -19.218 20.757 hybrid contribution 0.256 0.994 0.497 1.140 sum -1.700 8.588 -18.721 20.667 Atomic orbital electron populations 1.21285 0.96097 0.98383 1.00512 1.21298 0.96200 0.97535 0.98464 1.18910 0.91004 0.92325 0.86211 1.01861 1.21368 1.31348 1.11834 0.91332 0.92834 1.25564 0.95367 0.95697 1.01319 1.70011 1.38448 1.24282 1.22822 0.85722 0.78884 0.78801 0.78899 1.19776 1.21116 1.19805 1.60696 1.46927 1.16471 1.06021 1.20714 0.93179 0.99642 0.88943 1.19253 0.99775 0.91582 0.95903 1.20957 1.01115 1.01148 0.92853 1.18336 0.98774 0.88700 0.90634 1.86129 1.73527 1.20890 1.43203 1.23332 1.02753 0.77862 1.03707 1.18172 0.98327 0.89878 0.88035 1.86142 1.75505 1.26257 1.35814 1.23383 1.02720 0.77455 1.04333 1.21143 1.04551 1.00774 0.93939 1.21348 1.04034 0.96246 0.98061 1.86245 1.71615 1.04388 1.28414 1.23806 1.06905 0.94510 1.05588 0.94608 0.95177 0.92982 0.95917 0.92414 0.93070 0.84799 0.91061 0.95668 0.83356 0.85899 0.92423 0.91881 0.91630 0.85994 0.91930 0.82113 0.88415 0.88803 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.73 9.46 71.98 0.68 -4.05 16 2 C -0.10 -4.72 5.58 30.60 0.17 -4.55 16 3 C 0.22 11.44 2.30 44.17 0.10 11.54 16 4 H -0.04 -2.08 7.84 -2.39 -0.02 -2.10 16 5 C -0.52 -28.52 7.33 25.60 0.19 -28.33 16 6 H 0.05 2.93 7.60 -2.91 -0.02 2.90 16 7 C 0.02 1.09 5.30 84.65 0.45 1.53 16 8 N -0.92 -52.83 11.34 21.44 0.24 -52.59 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 13 N -0.67 -29.21 5.50 -499.46 -2.75 -31.95 16 14 C 0.10 3.99 4.99 85.55 0.43 4.42 16 15 C -0.06 -1.95 5.46 -19.71 -0.11 -2.06 16 16 C -0.14 -4.20 8.65 22.33 0.19 -4.01 16 17 C 0.08 2.44 6.70 22.56 0.15 2.59 16 18 O -0.32 -8.79 10.28 -80.66 -0.83 -9.62 16 19 C 0.02 0.34 9.81 113.37 1.11 1.45 16 20 C 0.10 2.85 6.70 22.55 0.15 3.00 16 21 O -0.32 -7.97 10.28 -79.40 -0.82 -8.78 16 22 C 0.02 0.22 9.81 113.37 1.11 1.33 16 23 C -0.18 -4.54 8.35 22.49 0.19 -4.35 16 24 C -0.08 -2.51 6.11 22.59 0.14 -2.37 16 25 S -0.15 -4.28 20.05 -56.49 -1.13 -5.42 16 26 C -0.14 -2.36 9.15 113.37 1.04 -1.32 16 27 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.03 1.45 7.37 -2.39 -0.02 1.43 16 29 H 0.05 2.26 7.50 -2.39 -0.02 2.24 16 30 H 0.02 1.01 7.43 -2.39 -0.02 1.00 16 31 H 0.06 3.16 6.12 -2.39 -0.01 3.15 16 32 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.33 14.86 7.27 -89.69 -0.65 14.21 16 34 H 0.07 2.69 7.25 -2.39 -0.02 2.67 16 35 H 0.03 1.02 7.24 -2.39 -0.02 1.00 16 36 H 0.15 4.03 6.26 -2.91 -0.02 4.01 16 37 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 39 H 0.06 1.08 7.66 -2.39 -0.02 1.07 16 40 H 0.07 0.75 7.67 -2.38 -0.02 0.73 16 41 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 0.77 7.65 -2.38 -0.02 0.75 16 43 H 0.16 2.97 4.10 -2.91 -0.01 2.96 16 44 H 0.10 1.30 7.74 -2.39 -0.02 1.28 16 45 H 0.09 1.37 7.75 -2.39 -0.02 1.35 16 46 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -66.99 377.00 3.07 -63.92 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.34 Total: 23.75 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 5.99 Total: -25.18 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.50 Total: -84.54 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.65 Total: -18.40 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -1.13 Total: -5.42 kcal Total: -66.99 3.07 -63.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086506727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.813 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds