Wall clock time and date at job start Tue Mar 31 2020 16:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47359 * 2 1 4 4 N 1.46503 * 109.47201 * 239.99651 * 2 1 3 5 5 C 1.34770 * 119.99842 * 85.00192 * 4 2 1 6 6 O 1.21280 * 120.00232 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99848 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47168 * 180.02562 * 7 5 4 9 9 C 1.38327 * 119.96152 * 269.72464 * 8 7 5 10 10 C 1.38290 * 120.13602 * 179.76873 * 9 8 7 11 11 C 1.38121 * 120.06593 * 0.50436 * 10 9 8 12 12 C 1.38852 * 119.93574 * 359.74894 * 11 10 9 13 13 O 1.35742 * 120.07451 * 179.97438 * 12 11 10 14 14 C 1.34837 * 116.99830 * 354.48942 * 13 12 11 15 15 H 1.08005 * 119.99647 * 5.05599 * 14 13 12 16 16 C 1.38658 * 120.00188 * 185.05857 * 14 13 12 17 17 N 1.31554 * 119.99972 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99793 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47320 * 90.00429 * 18 16 14 20 20 H 1.48505 * 109.46598 * 210.00002 * 18 16 14 21 21 H 1.48501 * 109.47298 * 329.99590 * 18 16 14 22 22 C 1.38076 * 119.97195 * 89.99877 * 8 7 5 23 23 C 1.50699 * 109.47116 * 119.99402 * 2 1 3 24 24 C 1.38240 * 119.99842 * 79.72806 * 23 2 1 25 25 C 1.38235 * 120.00144 * 179.78817 * 24 23 2 26 26 C 1.38236 * 119.99738 * 0.44191 * 25 24 23 27 27 C 1.38240 * 120.00044 * 359.81305 * 26 25 24 28 28 C 1.38226 * 119.99895 * 359.97314 * 27 26 25 29 29 H 1.08998 * 109.46971 * 60.00349 * 1 2 3 30 30 H 1.08998 * 109.47338 * 300.00162 * 1 2 3 31 31 H 1.09003 * 109.47359 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99633 * 264.99717 * 4 2 1 33 33 H 1.09000 * 109.47185 * 299.99686 * 7 5 4 34 34 H 1.08991 * 109.47272 * 59.99760 * 7 5 4 35 35 H 1.07992 * 119.93241 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.96003 * 180.25681 * 10 9 8 37 37 H 1.08003 * 120.03211 * 179.72851 * 11 10 9 38 38 H 0.96997 * 120.00339 * 180.02562 * 17 16 14 39 39 H 1.08005 * 120.03003 * 359.95611 * 22 8 7 40 40 H 1.08003 * 120.00163 * 359.97438 * 24 23 2 41 41 H 1.07997 * 120.00150 * 180.27321 * 25 24 23 42 42 H 1.08000 * 119.99581 * 179.83314 * 26 25 24 43 43 H 1.07993 * 119.99661 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.00357 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1582 -2.4117 7 6 2.6489 -0.7290 -3.5877 8 6 2.7003 0.2394 -4.7411 9 6 1.6001 0.3906 -5.5658 10 6 1.6417 1.2818 -6.6224 11 6 2.7864 2.0162 -6.8636 12 6 3.8943 1.8628 -6.0408 13 8 5.0209 2.5827 -6.2756 14 6 5.0404 3.3433 -7.3888 15 1 4.1557 3.4242 -8.0031 16 6 6.1962 4.0214 -7.7450 17 7 7.2739 3.9224 -6.9971 18 14 6.2233 5.0745 -9.2876 19 1 5.8118 6.4603 -8.9482 20 1 7.5968 5.0902 -9.8520 21 1 5.2831 4.5100 -10.2890 22 6 3.8475 0.9707 -4.9772 23 6 2.0323 -0.7103 1.2305 24 6 2.0614 -2.0919 1.2676 25 6 2.5263 -2.7434 2.3947 26 6 2.9535 -2.0135 3.4881 27 6 2.9194 -0.6319 3.4530 28 6 2.4587 0.0196 2.3243 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6319 -1.1525 33 1 3.6480 -1.1216 -3.3985 34 1 1.9760 -1.5508 -3.8325 35 1 0.7057 -0.1860 -5.3821 36 1 0.7796 1.4007 -7.2620 37 1 2.8198 2.7088 -7.6917 38 1 8.0823 4.3970 -7.2461 39 1 4.7075 0.8494 -4.3351 40 1 1.7238 -2.6622 0.4149 41 1 2.5531 -3.8227 2.4220 42 1 3.3141 -2.5226 4.3697 43 1 3.2536 -0.0618 4.3071 44 1 2.4317 1.0989 2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089585927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:51 Heat of formation + Delta-G solvation = -18.065055 kcal Electronic energy + Delta-G solvation = -25731.915243 eV Core-core repulsion = 22000.608980 eV Total energy + Delta-G solvation = -3731.306263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.31057 -39.32944 -38.63806 -36.51513 -35.50729 -32.52295 -32.17331 -31.50175 -31.14236 -29.46591 -29.06470 -26.96964 -25.20313 -24.10452 -23.06339 -21.76122 -21.43265 -20.61246 -20.08009 -17.89664 -17.45930 -16.86698 -16.69890 -16.09718 -15.41301 -15.33252 -14.94109 -14.76377 -14.34422 -14.32380 -13.97731 -13.78116 -13.69315 -13.44710 -13.32914 -13.30607 -12.64608 -12.54262 -12.41864 -12.30076 -11.92036 -11.72514 -11.46589 -11.38197 -11.21851 -11.07223 -10.77205 -10.72675 -10.55630 -10.40033 -9.71967 -9.27264 -9.26498 -9.22230 -9.00142 -8.77772 -7.99423 -7.14805 -6.38231 -3.97144 0.98565 1.06666 2.16265 2.46284 2.81238 3.15182 3.17479 3.20829 3.22571 3.50180 4.02040 4.29182 4.53750 4.60415 4.66470 4.79057 4.94190 5.05028 5.07413 5.12781 5.16797 5.22346 5.24845 5.30557 5.48072 5.55545 5.64310 5.64730 5.72207 5.77425 5.82307 5.98587 5.99965 6.11714 6.18412 6.19706 6.24542 6.40828 6.47904 6.65038 6.72883 6.98850 7.13901 7.33750 7.43374 7.48242 7.51332 7.90060 8.07068 8.35507 9.07597 9.79183 10.80192 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.002257 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.129582 B =12400.948665 C =13216.424978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.182 3.818 3 H 0.097 0.903 4 N -0.734 5.734 5 C 0.515 3.485 6 O -0.517 6.517 7 C -0.094 4.094 8 C -0.032 4.032 9 C -0.196 4.196 10 C -0.075 4.075 11 C -0.231 4.231 12 C 0.155 3.845 13 O -0.180 6.180 14 C -0.390 4.390 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.174 4.174 23 C -0.088 4.088 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.108 4.108 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.397 0.603 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -14.154 17.381 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.077 3.923 3 H 0.115 0.885 4 N -0.389 5.389 5 C 0.302 3.698 6 O -0.391 6.391 7 C -0.134 4.134 8 C -0.033 4.033 9 C -0.215 4.215 10 C -0.093 4.093 11 C -0.250 4.250 12 C 0.101 3.899 13 O -0.084 6.084 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.194 4.194 23 C -0.088 4.088 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.140 4.140 27 C -0.134 4.134 28 C -0.126 4.126 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.232 0.768 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.033 -13.150 17.436 24.468 hybrid contribution 0.100 0.072 -0.678 0.690 sum -10.933 -13.078 16.757 23.903 Atomic orbital electron populations 1.22155 0.94252 1.02254 1.02854 1.19748 0.94138 0.96945 0.81445 0.88545 1.46201 1.69225 1.13960 1.09476 1.20771 0.77345 0.87581 0.84098 1.90757 1.47989 1.15747 1.84575 1.20593 1.03251 0.98144 0.91393 1.18649 0.93796 0.96504 0.94342 1.20345 0.97779 1.04265 0.99153 1.20676 0.96700 0.95341 0.96615 1.21169 0.94270 1.05634 1.03947 1.19274 0.87342 0.90138 0.93107 1.83977 1.31659 1.51248 1.41500 1.21318 0.99332 1.25161 1.00833 0.89137 1.25273 0.94266 0.97906 0.99137 1.70041 1.01835 1.40690 1.37476 0.85722 0.78026 0.79638 0.80091 1.19929 1.20311 1.19231 1.19948 0.98752 1.00396 1.00268 1.19989 0.99310 0.93969 0.95541 1.20931 1.00208 0.93750 0.98422 1.21137 0.98948 0.99944 0.93488 1.21190 0.99990 0.94259 0.98592 1.21166 0.99469 0.94675 0.98117 1.21065 0.98373 1.00171 0.93022 0.91382 0.91639 0.92408 0.76794 0.88270 0.88407 0.87972 0.87510 0.85644 0.92127 0.86864 0.86092 0.85941 0.86080 0.85870 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.46 37.16 0.35 -1.14 16 2 C 0.18 1.89 2.77 -69.08 -0.19 1.70 16 3 H 0.10 1.21 7.44 -51.93 -0.39 0.83 16 4 N -0.73 -7.77 5.03 -54.93 -0.28 -8.04 16 5 C 0.52 7.49 7.79 -10.99 -0.09 7.40 16 6 O -0.52 -10.04 15.70 5.56 0.09 -9.95 16 7 C -0.09 -1.26 5.83 -29.03 -0.17 -1.43 16 8 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 9 C -0.20 -3.61 9.70 -39.53 -0.38 -3.99 16 10 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 11 C -0.23 -5.31 9.17 -39.40 -0.36 -5.67 16 12 C 0.15 3.94 6.65 -39.11 -0.26 3.68 16 13 O -0.18 -5.34 9.76 0.05 0.00 -5.34 16 14 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 15 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.87 -26.02 13.67 55.48 0.76 -25.26 16 18 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 22 C -0.17 -3.90 9.64 -39.39 -0.38 -4.28 16 23 C -0.09 -0.79 4.95 -104.62 -0.52 -1.31 16 24 C -0.11 -0.89 9.05 -39.58 -0.36 -1.24 16 25 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 27 C -0.12 -0.90 10.05 -39.59 -0.40 -1.29 16 28 C -0.11 -0.95 9.67 -39.59 -0.38 -1.33 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.40 3.04 6.89 -40.82 -0.28 2.76 16 33 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.11 2.47 8.06 -52.48 -0.42 2.04 16 40 H 0.12 0.72 6.94 -52.48 -0.36 0.35 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.99 8.04 -52.49 -0.42 0.57 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -35.26 376.63 -9.17 -44.43 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.80 Total: 6.77 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -4.59 Total: -24.33 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.48 Total: -33.30 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.09 Total: -15.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.26 -9.17 -44.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089585927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.369 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds