Wall clock time and date at job start Tue Mar 31 2020 16:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47359 * 2 1 4 4 N 1.46503 * 109.47201 * 239.99651 * 2 1 3 5 5 C 1.34770 * 119.99842 * 85.00192 * 4 2 1 6 6 O 1.21280 * 120.00232 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99848 * 180.02562 * 5 4 2 8 8 C 1.50697 * 109.47168 * 180.02562 * 7 5 4 9 9 C 1.38327 * 119.96152 * 269.72464 * 8 7 5 10 10 C 1.38290 * 120.13602 * 179.76873 * 9 8 7 11 11 C 1.38121 * 120.06593 * 0.50436 * 10 9 8 12 12 C 1.38852 * 119.93574 * 359.74894 * 11 10 9 13 13 O 1.35742 * 120.07451 * 179.97438 * 12 11 10 14 14 C 1.34837 * 116.99830 * 354.48942 * 13 12 11 15 15 H 1.08005 * 119.99647 * 5.05599 * 14 13 12 16 16 C 1.38658 * 120.00188 * 185.05857 * 14 13 12 17 17 N 1.31554 * 119.99972 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99793 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47320 * 90.00429 * 18 16 14 20 20 H 1.48505 * 109.46598 * 210.00002 * 18 16 14 21 21 H 1.48501 * 109.47298 * 329.99590 * 18 16 14 22 22 C 1.38076 * 119.97195 * 89.99877 * 8 7 5 23 23 C 1.50699 * 109.47116 * 119.99402 * 2 1 3 24 24 C 1.38240 * 119.99842 * 79.72806 * 23 2 1 25 25 C 1.38235 * 120.00144 * 179.78817 * 24 23 2 26 26 C 1.38236 * 119.99738 * 0.44191 * 25 24 23 27 27 C 1.38240 * 120.00044 * 359.81305 * 26 25 24 28 28 C 1.38226 * 119.99895 * 359.97314 * 27 26 25 29 29 H 1.08998 * 109.46971 * 60.00349 * 1 2 3 30 30 H 1.08998 * 109.47338 * 300.00162 * 1 2 3 31 31 H 1.09003 * 109.47359 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99633 * 264.99717 * 4 2 1 33 33 H 1.09000 * 109.47185 * 299.99686 * 7 5 4 34 34 H 1.08991 * 109.47272 * 59.99760 * 7 5 4 35 35 H 1.07992 * 119.93241 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.96003 * 180.25681 * 10 9 8 37 37 H 1.08003 * 120.03211 * 179.72851 * 11 10 9 38 38 H 0.96997 * 120.00339 * 180.02562 * 17 16 14 39 39 H 1.08005 * 120.03003 * 359.95611 * 22 8 7 40 40 H 1.08003 * 120.00163 * 359.97438 * 24 23 2 41 41 H 1.07997 * 120.00150 * 180.27321 * 25 24 23 42 42 H 1.08000 * 119.99581 * 179.83314 * 26 25 24 43 43 H 1.07993 * 119.99661 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.00357 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1582 -2.4117 7 6 2.6489 -0.7290 -3.5877 8 6 2.7003 0.2394 -4.7411 9 6 1.6001 0.3906 -5.5658 10 6 1.6417 1.2818 -6.6224 11 6 2.7864 2.0162 -6.8636 12 6 3.8943 1.8628 -6.0408 13 8 5.0209 2.5827 -6.2756 14 6 5.0404 3.3433 -7.3888 15 1 4.1557 3.4242 -8.0031 16 6 6.1962 4.0214 -7.7450 17 7 7.2739 3.9224 -6.9971 18 14 6.2233 5.0745 -9.2876 19 1 5.8118 6.4603 -8.9482 20 1 7.5968 5.0902 -9.8520 21 1 5.2831 4.5100 -10.2890 22 6 3.8475 0.9707 -4.9772 23 6 2.0323 -0.7103 1.2305 24 6 2.0614 -2.0919 1.2676 25 6 2.5263 -2.7434 2.3947 26 6 2.9535 -2.0135 3.4881 27 6 2.9194 -0.6319 3.4530 28 6 2.4587 0.0196 2.3243 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2490 -1.6319 -1.1525 33 1 3.6480 -1.1216 -3.3985 34 1 1.9760 -1.5508 -3.8325 35 1 0.7057 -0.1860 -5.3821 36 1 0.7796 1.4007 -7.2620 37 1 2.8198 2.7088 -7.6917 38 1 8.0823 4.3970 -7.2461 39 1 4.7075 0.8494 -4.3351 40 1 1.7238 -2.6622 0.4149 41 1 2.5531 -3.8227 2.4220 42 1 3.3141 -2.5226 4.3697 43 1 3.2536 -0.0618 4.3071 44 1 2.4317 1.0989 2.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089585927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:50 Heat of formation + Delta-G solvation = -39.953226 kcal Electronic energy + Delta-G solvation = -25732.864385 eV Core-core repulsion = 22000.608980 eV Total energy + Delta-G solvation = -3732.255405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.32773 -40.66775 -39.88472 -38.21821 -36.49618 -34.34780 -33.67664 -32.53948 -31.76161 -30.87050 -30.13691 -28.36726 -27.23792 -24.90600 -23.71893 -23.27731 -22.83168 -21.73388 -21.18092 -19.53193 -18.87784 -18.39935 -17.62506 -16.94072 -16.76144 -16.60070 -16.11494 -16.04092 -15.85990 -15.56628 -15.44503 -14.97762 -14.83979 -14.52329 -14.36856 -14.24711 -14.06546 -13.97662 -13.59119 -13.36898 -13.09950 -12.96932 -12.80876 -12.53234 -12.46565 -12.38617 -12.21442 -12.10179 -11.96021 -11.75874 -11.20233 -10.95939 -10.79585 -10.18439 -9.82729 -9.69299 -9.60819 -8.97162 -8.47102 -6.15711 0.37206 0.49199 0.53741 0.76637 1.33592 1.43611 1.51807 1.68800 2.17380 2.21405 2.84425 2.89580 3.18773 3.44792 3.57452 3.81090 3.95028 4.10456 4.11902 4.13429 4.28987 4.30120 4.32635 4.33268 4.45836 4.58879 4.61388 4.64038 4.65763 4.74478 4.75239 4.93422 5.04639 5.08141 5.13167 5.14280 5.21738 5.31414 5.40924 5.56070 5.62993 5.65756 5.69718 5.73499 5.76202 6.03021 6.09281 6.24411 6.57578 6.97391 7.30989 7.79424 8.76649 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.002257 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.129582 B =12400.948665 C =13216.424978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.183 3.817 3 H 0.065 0.935 4 N -0.713 5.713 5 C 0.516 3.484 6 O -0.576 6.576 7 C -0.091 4.091 8 C -0.025 4.025 9 C -0.180 4.180 10 C -0.074 4.074 11 C -0.247 4.247 12 C 0.111 3.889 13 O -0.235 6.235 14 C -0.414 4.414 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.923 5.923 18 Si 1.021 2.979 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.252 1.252 22 C -0.194 4.194 23 C -0.100 4.100 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.127 4.127 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.415 0.585 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.272 0.728 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.737 -17.143 17.810 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.079 3.921 3 H 0.084 0.916 4 N -0.367 5.367 5 C 0.304 3.696 6 O -0.455 6.455 7 C -0.131 4.131 8 C -0.026 4.026 9 C -0.198 4.198 10 C -0.092 4.092 11 C -0.266 4.266 12 C 0.061 3.939 13 O -0.142 6.142 14 C -0.490 4.490 15 H 0.118 0.882 16 C -0.222 4.222 17 N -0.562 5.562 18 Si 0.839 3.161 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.175 1.175 22 C -0.213 4.213 23 C -0.101 4.101 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.143 4.143 28 C -0.146 4.146 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.533 -16.224 17.908 27.696 hybrid contribution 0.647 0.762 -0.574 1.153 sum -12.886 -15.462 17.334 26.563 Atomic orbital electron populations 1.22080 0.93345 1.03202 1.02143 1.19681 0.94806 0.95672 0.81989 0.91630 1.46004 1.67613 1.14650 1.08427 1.20930 0.76647 0.86847 0.85218 1.90753 1.50943 1.18210 1.85549 1.20712 1.05851 0.97724 0.88766 1.19190 0.92150 0.95736 0.95479 1.20982 0.98778 1.02761 0.97271 1.21142 0.96417 0.94260 0.97366 1.21293 0.95051 1.06572 1.03717 1.19881 0.87431 0.91446 0.95123 1.83936 1.34097 1.53465 1.42717 1.21835 1.00219 1.25683 1.01269 0.88229 1.26630 0.93431 0.99192 1.02970 1.70191 1.02846 1.42913 1.40204 0.84568 0.78661 0.77490 0.75341 1.18938 1.19345 1.17540 1.20223 1.00370 1.01011 0.99695 1.19885 1.00600 0.94735 0.94841 1.21167 0.99871 0.93054 0.99476 1.21481 0.98040 1.01273 0.93011 1.21537 0.99290 0.94069 0.99516 1.21401 0.99338 0.95419 0.98185 1.21204 0.99259 1.00323 0.93803 0.93533 0.90929 0.90498 0.74641 0.86203 0.83589 0.83382 0.83672 0.86482 0.91853 0.87750 0.84062 0.83530 0.84001 0.84529 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.46 71.98 0.68 -1.98 16 2 C 0.18 3.69 2.77 44.24 0.12 3.81 16 3 H 0.07 1.74 7.44 -2.39 -0.02 1.72 16 4 N -0.71 -13.53 5.03 -446.10 -2.24 -15.78 16 5 C 0.52 14.08 7.79 87.66 0.68 14.76 16 6 O -0.58 -22.43 15.70 -3.03 -0.05 -22.48 16 7 C -0.09 -2.14 5.83 29.10 0.17 -1.97 16 8 C -0.02 -0.88 4.37 -19.88 -0.09 -0.97 16 9 C -0.18 -5.96 9.70 22.30 0.22 -5.74 16 10 C -0.07 -2.74 10.04 22.25 0.22 -2.51 16 11 C -0.25 -11.60 9.17 22.39 0.21 -11.39 16 12 C 0.11 5.96 6.65 22.58 0.15 6.11 16 13 O -0.24 -15.01 9.76 -22.72 -0.22 -15.23 16 14 C -0.41 -25.32 9.49 67.92 0.64 -24.67 16 15 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 16 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 17 N -0.92 -58.73 13.67 21.61 0.30 -58.43 16 18 Si 1.02 44.51 29.55 68.60 2.03 46.54 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 21 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 22 C -0.19 -8.93 9.64 22.39 0.22 -8.72 16 23 C -0.10 -1.68 4.95 -19.86 -0.10 -1.78 16 24 C -0.12 -1.47 9.05 22.27 0.20 -1.27 16 25 C -0.12 -1.33 10.05 22.27 0.22 -1.10 16 26 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 27 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 28 C -0.13 -2.19 9.67 22.27 0.22 -1.98 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.42 4.85 6.89 -92.71 -0.64 4.21 16 33 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 34 H 0.15 2.08 8.08 -2.39 -0.02 2.06 16 35 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 36 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 37 H 0.12 5.55 5.64 -2.91 -0.02 5.53 16 38 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.14 1.09 6.94 -2.91 -0.02 1.07 16 41 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 42 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.12 2.04 8.04 -2.91 -0.02 2.02 16 Total: -1.00 -84.99 376.63 4.87 -80.12 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.38 Total: 28.52 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 4.68 Total: -43.26 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -1.95 Total: -74.21 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.27 Total: -37.71 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -84.99 4.87 -80.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089585927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.167 kcal (2) G-P(sol) polarization free energy of solvation -84.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds