Wall clock time and date at job start Tue Mar 31 2020 16:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47741 * 2 1 4 4 N 1.46503 * 109.47072 * 120.00756 * 2 1 3 5 5 C 1.34783 * 119.99585 * 274.99382 * 4 2 1 6 6 O 1.21284 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00059 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47151 * 180.02562 * 7 5 4 9 9 C 1.38328 * 119.96224 * 270.02423 * 8 7 5 10 10 C 1.38279 * 120.13490 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06774 * 359.77134 * 10 9 8 12 12 C 1.38852 * 119.93464 * 0.50144 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.74702 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96539 * 89.99818 * 8 7 5 23 23 C 1.50704 * 109.47003 * 239.99895 * 2 1 3 24 24 C 1.38235 * 120.00101 * 279.73212 * 23 2 1 25 25 C 1.38244 * 119.99963 * 179.80914 * 24 23 2 26 26 C 1.38240 * 119.99616 * 0.39613 * 25 24 23 27 27 C 1.38235 * 120.00278 * 359.85480 * 26 25 24 28 28 C 1.38234 * 119.99946 * 100.00121 * 23 2 1 29 29 H 1.09006 * 109.47226 * 59.99730 * 1 2 3 30 30 H 1.09001 * 109.47900 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46848 * 299.99804 * 1 2 3 32 32 H 0.97001 * 120.00603 * 94.99812 * 4 2 1 33 33 H 1.09004 * 109.46756 * 60.00007 * 7 5 4 34 34 H 1.08998 * 109.46908 * 300.00650 * 7 5 4 35 35 H 1.08001 * 119.93314 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.96467 * 180.02562 * 10 9 8 37 37 H 1.08006 * 120.03757 * 180.27571 * 11 10 9 38 38 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03547 * 0.04988 * 22 8 7 40 40 H 1.07997 * 120.00014 * 359.97438 * 24 23 2 41 41 H 1.07999 * 119.99995 * 180.22609 * 25 24 23 42 42 H 1.07996 * 119.99590 * 179.83726 * 26 25 24 43 43 H 1.07995 * 120.00050 * 179.97438 * 27 26 25 44 44 H 1.07998 * 119.99901 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1582 2.4118 7 6 2.6488 -0.7290 3.5877 8 6 2.6992 0.2391 4.7415 9 6 3.8478 0.9727 4.9782 10 6 3.8977 1.8625 6.0355 11 6 2.7984 2.0248 6.8558 12 6 1.6459 1.2857 6.6243 13 8 0.5656 1.4392 7.4319 14 6 0.7161 2.2335 8.5110 15 1 1.6375 2.7778 8.6567 16 6 -0.3122 2.3515 9.4337 17 7 -1.4343 1.6881 9.2565 18 14 -0.1035 3.4513 10.9291 19 1 -0.5715 4.8226 10.6041 20 1 -0.9029 2.9098 12.0574 21 1 1.3300 3.4959 11.3146 22 6 1.5986 0.3934 5.5608 23 6 2.0323 -0.7105 -1.2305 24 6 2.0719 -2.0918 -1.2633 25 6 2.5289 -2.7436 -2.3935 26 6 2.9541 -2.0137 -3.4878 27 6 2.9194 -0.6322 -3.4531 28 6 2.4587 0.0194 -2.3243 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6319 1.1525 33 1 3.6480 -1.1217 3.3985 34 1 1.9759 -1.5508 3.8324 35 1 4.7074 0.8503 4.3358 36 1 4.7957 2.4341 6.2175 37 1 2.8364 2.7231 7.6788 38 1 -2.1534 1.7704 9.9022 39 1 0.7023 -0.1799 5.3757 40 1 1.7432 -2.6620 -0.4070 41 1 2.5564 -3.8229 -2.4205 42 1 3.3136 -2.5228 -4.3698 43 1 3.2519 -0.0620 -4.3078 44 1 2.4314 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089585928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:58 Heat of formation + Delta-G solvation = -18.019290 kcal Electronic energy + Delta-G solvation = -25715.582703 eV Core-core repulsion = 21984.278425 eV Total energy + Delta-G solvation = -3731.304279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.31927 -39.33924 -38.64054 -36.51631 -35.50820 -32.52369 -32.17457 -31.51210 -31.15974 -29.46677 -29.05502 -26.96797 -25.20119 -24.10312 -23.08596 -21.76677 -21.43201 -20.62004 -20.08005 -17.90481 -17.46516 -16.87593 -16.70103 -16.08793 -15.42456 -15.35917 -14.90515 -14.80318 -14.36076 -14.31691 -13.99340 -13.71950 -13.68142 -13.54502 -13.37955 -13.17805 -12.75841 -12.46167 -12.37635 -12.33019 -11.89903 -11.72886 -11.47378 -11.39367 -11.21955 -11.07020 -10.77196 -10.72686 -10.55754 -10.40112 -9.71981 -9.28842 -9.27629 -9.23208 -9.01226 -8.77850 -7.99537 -7.14891 -6.38352 -3.97184 0.96280 1.03993 2.16121 2.46247 2.81144 3.14955 3.17437 3.20447 3.22471 3.48105 4.01944 4.28623 4.51736 4.60281 4.64157 4.76666 4.93960 5.05579 5.08454 5.11781 5.17117 5.18983 5.24799 5.32994 5.50663 5.55126 5.62844 5.64389 5.72236 5.78433 5.82094 6.00131 6.04490 6.10846 6.15824 6.18071 6.24501 6.40658 6.47891 6.62533 6.72791 6.98755 7.13887 7.33661 7.43401 7.48108 7.51161 7.89983 8.06946 8.35420 9.07517 9.79048 10.80026 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.002122 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.222546 B =13194.337066 C =13614.698216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.096 0.904 4 N -0.734 5.734 5 C 0.515 3.485 6 O -0.517 6.517 7 C -0.094 4.094 8 C -0.032 4.032 9 C -0.196 4.196 10 C -0.075 4.075 11 C -0.231 4.231 12 C 0.154 3.846 13 O -0.180 6.180 14 C -0.390 4.390 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.174 4.174 23 C -0.087 4.087 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.117 4.117 28 C -0.109 4.109 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.397 0.603 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 -8.996 -22.583 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 H 0.114 0.886 4 N -0.389 5.389 5 C 0.302 3.698 6 O -0.391 6.391 7 C -0.134 4.134 8 C -0.033 4.033 9 C -0.215 4.215 10 C -0.093 4.093 11 C -0.250 4.250 12 C 0.101 3.899 13 O -0.084 6.084 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.193 4.193 23 C -0.087 4.087 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.135 4.135 28 C -0.127 4.127 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.206 -8.229 -22.398 25.234 hybrid contribution 0.235 0.109 0.636 0.686 sum 8.441 -8.120 -21.763 24.715 Atomic orbital electron populations 1.22171 0.94112 1.02425 1.03006 1.19746 0.94286 0.96780 0.81387 0.88625 1.46209 1.69230 1.13960 1.09496 1.20775 0.77382 0.87604 0.84039 1.90759 1.47951 1.15867 1.84485 1.20594 1.03078 0.98364 0.91344 1.18650 0.93924 0.96728 0.94007 1.20348 0.97854 1.02297 1.01012 1.20674 0.97139 0.96972 0.94553 1.21170 0.94455 1.05346 1.04021 1.19278 0.87241 0.92470 0.90903 1.83976 1.30170 1.60848 1.33393 1.21313 1.02982 1.23533 0.98801 0.89146 1.25272 0.94765 0.97924 0.98637 1.70040 1.04444 1.39649 1.35891 0.85723 0.78682 0.79328 0.79748 1.19935 1.20317 1.19235 1.19941 0.98740 1.02974 0.97687 1.20002 0.99151 0.93978 0.95592 1.20950 1.00119 0.93779 0.98443 1.21148 0.98929 0.99968 0.93429 1.21186 1.00052 0.94255 0.98589 1.21159 0.99585 0.94673 0.98066 1.21053 0.98481 1.00115 0.93067 0.91645 0.92324 0.91168 0.76793 0.88422 0.88254 0.87974 0.87511 0.85647 0.92137 0.86855 0.86028 0.85920 0.86095 0.85911 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.46 37.16 0.35 -1.29 16 2 C 0.18 1.90 2.78 -69.08 -0.19 1.71 16 3 H 0.10 1.16 7.44 -51.93 -0.39 0.78 16 4 N -0.73 -7.76 5.03 -54.93 -0.28 -8.03 16 5 C 0.52 7.48 7.79 -10.98 -0.09 7.39 16 6 O -0.52 -10.03 15.70 5.55 0.09 -9.94 16 7 C -0.09 -1.26 5.83 -29.04 -0.17 -1.43 16 8 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 9 C -0.20 -3.62 9.70 -39.53 -0.38 -4.00 16 10 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 11 C -0.23 -5.30 9.17 -39.40 -0.36 -5.66 16 12 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 13 O -0.18 -5.33 9.76 0.05 0.00 -5.33 16 14 C -0.39 -11.24 9.49 30.89 0.29 -10.94 16 15 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.94 13.67 55.48 0.76 -25.18 16 18 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 23 C -0.09 -0.76 4.96 -104.62 -0.52 -1.28 16 24 C -0.11 -0.87 9.06 -39.58 -0.36 -1.23 16 25 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 26 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 27 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 28 C -0.11 -0.90 9.67 -39.58 -0.38 -1.28 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 3.03 6.85 -40.82 -0.28 2.75 16 33 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 34 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 40 H 0.12 0.73 6.90 -52.49 -0.36 0.37 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.91 8.04 -52.49 -0.42 0.49 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -35.13 376.59 -9.17 -44.30 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.80 Total: 6.71 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -4.59 Total: -24.24 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.48 Total: -33.21 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.13 -9.17 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089585928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.283 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds