Wall clock time and date at job start Tue Mar 31 2020 16:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47741 * 2 1 4 4 N 1.46503 * 109.47072 * 120.00756 * 2 1 3 5 5 C 1.34783 * 119.99585 * 274.99382 * 4 2 1 6 6 O 1.21284 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00059 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47151 * 180.02562 * 7 5 4 9 9 C 1.38328 * 119.96224 * 270.02423 * 8 7 5 10 10 C 1.38279 * 120.13490 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06774 * 359.77134 * 10 9 8 12 12 C 1.38852 * 119.93464 * 0.50144 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.74702 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96539 * 89.99818 * 8 7 5 23 23 C 1.50704 * 109.47003 * 239.99895 * 2 1 3 24 24 C 1.38235 * 120.00101 * 279.73212 * 23 2 1 25 25 C 1.38244 * 119.99963 * 179.80914 * 24 23 2 26 26 C 1.38240 * 119.99616 * 0.39613 * 25 24 23 27 27 C 1.38235 * 120.00278 * 359.85480 * 26 25 24 28 28 C 1.38234 * 119.99946 * 100.00121 * 23 2 1 29 29 H 1.09006 * 109.47226 * 59.99730 * 1 2 3 30 30 H 1.09001 * 109.47900 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46848 * 299.99804 * 1 2 3 32 32 H 0.97001 * 120.00603 * 94.99812 * 4 2 1 33 33 H 1.09004 * 109.46756 * 60.00007 * 7 5 4 34 34 H 1.08998 * 109.46908 * 300.00650 * 7 5 4 35 35 H 1.08001 * 119.93314 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.96467 * 180.02562 * 10 9 8 37 37 H 1.08006 * 120.03757 * 180.27571 * 11 10 9 38 38 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.03547 * 0.04988 * 22 8 7 40 40 H 1.07997 * 120.00014 * 359.97438 * 24 23 2 41 41 H 1.07999 * 119.99995 * 180.22609 * 25 24 23 42 42 H 1.07996 * 119.99590 * 179.83726 * 26 25 24 43 43 H 1.07995 * 120.00050 * 179.97438 * 27 26 25 44 44 H 1.07998 * 119.99901 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1582 2.4118 7 6 2.6488 -0.7290 3.5877 8 6 2.6992 0.2391 4.7415 9 6 3.8478 0.9727 4.9782 10 6 3.8977 1.8625 6.0355 11 6 2.7984 2.0248 6.8558 12 6 1.6459 1.2857 6.6243 13 8 0.5656 1.4392 7.4319 14 6 0.7161 2.2335 8.5110 15 1 1.6375 2.7778 8.6567 16 6 -0.3122 2.3515 9.4337 17 7 -1.4343 1.6881 9.2565 18 14 -0.1035 3.4513 10.9291 19 1 -0.5715 4.8226 10.6041 20 1 -0.9029 2.9098 12.0574 21 1 1.3300 3.4959 11.3146 22 6 1.5986 0.3934 5.5608 23 6 2.0323 -0.7105 -1.2305 24 6 2.0719 -2.0918 -1.2633 25 6 2.5289 -2.7436 -2.3935 26 6 2.9541 -2.0137 -3.4878 27 6 2.9194 -0.6322 -3.4531 28 6 2.4587 0.0194 -2.3243 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6319 1.1525 33 1 3.6480 -1.1217 3.3985 34 1 1.9759 -1.5508 3.8324 35 1 4.7074 0.8503 4.3358 36 1 4.7957 2.4341 6.2175 37 1 2.8364 2.7231 7.6788 38 1 -2.1534 1.7704 9.9022 39 1 0.7023 -0.1799 5.3757 40 1 1.7432 -2.6620 -0.4070 41 1 2.5564 -3.8229 -2.4205 42 1 3.3136 -2.5228 -4.3698 43 1 3.2519 -0.0620 -4.3078 44 1 2.4314 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089585928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:55 Heat of formation + Delta-G solvation = -39.709539 kcal Electronic energy + Delta-G solvation = -25716.523263 eV Core-core repulsion = 21984.278425 eV Total energy + Delta-G solvation = -3732.244838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.32955 -40.66624 -39.87957 -38.21809 -36.49796 -34.34535 -33.67827 -32.53994 -31.74963 -30.87202 -30.14617 -28.37504 -27.23413 -24.91482 -23.71013 -23.27423 -22.83048 -21.73065 -21.17969 -19.52932 -18.88264 -18.39716 -17.61739 -16.91014 -16.81483 -16.53959 -16.14323 -16.03940 -15.92180 -15.51895 -15.40853 -14.97278 -14.83357 -14.60634 -14.31773 -14.23006 -14.10422 -13.94680 -13.61082 -13.37261 -13.11500 -12.96850 -12.80598 -12.55072 -12.46666 -12.38570 -12.21688 -12.10220 -11.95153 -11.75829 -11.20146 -10.96323 -10.79370 -10.18906 -9.81610 -9.68708 -9.60857 -8.97285 -8.46807 -6.15273 0.38113 0.50255 0.53685 0.76384 1.33785 1.43693 1.51886 1.68353 2.17466 2.21240 2.84617 2.90232 3.18744 3.44750 3.57688 3.80795 3.95506 4.09135 4.12498 4.14215 4.28160 4.30911 4.32003 4.33090 4.45301 4.58479 4.61862 4.62876 4.65230 4.73636 4.74503 4.91356 5.04762 5.07860 5.13364 5.15233 5.19674 5.31408 5.40813 5.57206 5.64140 5.65612 5.70475 5.73376 5.76099 6.03165 6.10133 6.24050 6.57110 6.97662 7.30559 7.79514 8.76767 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.002122 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.222546 B =13194.337066 C =13614.698216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.186 3.814 3 H 0.073 0.927 4 N -0.713 5.713 5 C 0.516 3.484 6 O -0.576 6.576 7 C -0.091 4.091 8 C -0.025 4.025 9 C -0.181 4.181 10 C -0.074 4.074 11 C -0.247 4.247 12 C 0.111 3.889 13 O -0.234 6.234 14 C -0.414 4.414 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.922 5.922 18 Si 1.020 2.980 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.252 1.252 22 C -0.192 4.192 23 C -0.098 4.098 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.415 0.585 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.117 0.883 38 H 0.272 0.728 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.841 -10.458 -24.584 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 H 0.091 0.909 4 N -0.367 5.367 5 C 0.304 3.696 6 O -0.454 6.454 7 C -0.131 4.131 8 C -0.026 4.026 9 C -0.199 4.199 10 C -0.092 4.092 11 C -0.266 4.266 12 C 0.061 3.939 13 O -0.141 6.141 14 C -0.490 4.490 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.839 3.161 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.176 1.176 22 C -0.212 4.212 23 C -0.099 4.099 24 C -0.138 4.138 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.142 4.142 28 C -0.142 4.142 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.253 0.747 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.216 -9.751 -24.466 28.626 hybrid contribution -0.483 0.431 0.909 1.116 sum 10.733 -9.320 -23.558 27.514 Atomic orbital electron populations 1.22119 0.94287 1.02931 1.01939 1.19658 0.94119 0.96026 0.82102 0.90885 1.46014 1.67575 1.14655 1.08495 1.20934 0.76709 0.86891 0.85104 1.90754 1.50827 1.18410 1.85427 1.20711 1.06389 0.97362 0.88603 1.19184 0.92432 0.96738 0.94206 1.20973 0.98835 0.99998 1.00105 1.21128 0.97135 0.97127 0.93811 1.21291 0.95051 1.05358 1.04910 1.19886 0.87689 0.94517 0.91798 1.83935 1.32631 1.62738 1.34824 1.21822 1.03799 1.24027 0.99342 0.88267 1.26623 0.94075 0.99553 1.01992 1.70189 1.05747 1.42369 1.37730 0.84571 0.79474 0.76993 0.75035 1.18960 1.19343 1.17583 1.20221 1.00122 1.02908 0.97901 1.19838 1.00584 0.94589 0.94851 1.21148 0.99974 0.93211 0.99433 1.21462 0.98163 1.01206 0.93005 1.21534 0.99241 0.94172 0.99379 1.21410 0.99278 0.95301 0.98168 1.21201 0.99045 1.00407 0.93596 0.90664 0.90951 0.94285 0.74659 0.83886 0.85925 0.83585 0.83739 0.86482 0.91862 0.87551 0.84549 0.83744 0.83975 0.84296 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.46 71.98 0.68 -2.50 16 2 C 0.19 3.73 2.78 44.24 0.12 3.86 16 3 H 0.07 1.82 7.44 -2.39 -0.02 1.80 16 4 N -0.71 -13.63 5.03 -446.09 -2.24 -15.87 16 5 C 0.52 14.12 7.79 87.66 0.68 14.81 16 6 O -0.58 -22.43 15.70 -3.04 -0.05 -22.48 16 7 C -0.09 -2.15 5.83 29.10 0.17 -1.98 16 8 C -0.02 -0.89 4.37 -19.88 -0.09 -0.97 16 9 C -0.18 -6.07 9.70 22.30 0.22 -5.85 16 10 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 11 C -0.25 -11.60 9.17 22.39 0.21 -11.39 16 12 C 0.11 5.94 6.65 22.58 0.15 6.09 16 13 O -0.23 -14.90 9.76 -22.74 -0.22 -15.12 16 14 C -0.41 -25.24 9.49 67.92 0.64 -24.60 16 15 H 0.10 5.59 5.21 -2.91 -0.02 5.57 16 16 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 17 N -0.92 -58.42 13.67 21.61 0.30 -58.13 16 18 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 22 C -0.19 -8.82 9.65 22.39 0.22 -8.60 16 23 C -0.10 -1.56 4.96 -19.87 -0.10 -1.66 16 24 C -0.12 -1.47 9.06 22.27 0.20 -1.27 16 25 C -0.12 -1.26 10.05 22.27 0.22 -1.03 16 26 C -0.13 -1.32 10.05 22.27 0.22 -1.09 16 27 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 28 C -0.12 -1.90 9.67 22.27 0.22 -1.68 16 29 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.42 4.94 6.85 -92.71 -0.64 4.30 16 33 H 0.14 2.14 8.09 -2.38 -0.02 2.12 16 34 H 0.12 2.39 8.08 -2.39 -0.02 2.37 16 35 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 36 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 37 H 0.12 5.55 5.64 -2.91 -0.02 5.54 16 38 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.14 1.17 6.90 -2.91 -0.02 1.15 16 41 H 0.14 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.14 0.84 8.06 -2.91 -0.02 0.82 16 43 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.12 1.79 8.04 -2.91 -0.02 1.76 16 Total: -1.00 -84.25 376.59 4.88 -79.37 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.38 Total: 28.49 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 4.68 Total: -42.75 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.95 Total: -74.00 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.27 Total: -37.59 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -84.25 4.88 -79.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089585928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.663 kcal (2) G-P(sol) polarization free energy of solvation -84.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds