Wall clock time and date at job start Tue Mar 31 2020 14:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47163 * 2 1 4 4 N 1.46495 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.36943 * 120.00170 * 293.76155 * 4 3 2 6 6 H 1.07998 * 119.99830 * 149.38895 * 5 4 3 7 7 C 1.38806 * 119.99781 * 329.38639 * 5 4 3 8 8 N 1.31617 * 120.00254 * 337.58358 * 7 5 4 9 9 Si 1.86801 * 119.99788 * 157.58070 * 7 5 4 10 10 H 1.48508 * 109.47156 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47441 * 120.00425 * 9 7 5 12 12 H 1.48501 * 109.47033 * 240.00268 * 9 7 5 13 13 S 1.65604 * 119.99975 * 113.76143 * 4 3 2 14 14 O 1.42098 * 106.39957 * 336.46104 * 13 4 3 15 15 O 1.42096 * 106.40197 * 203.54076 * 13 4 3 16 16 C 1.76204 * 107.21552 * 89.99986 * 13 4 3 17 17 C 1.38237 * 120.00108 * 90.00628 * 16 13 4 18 18 C 1.38228 * 119.99833 * 179.97438 * 17 16 13 19 19 C 1.38234 * 120.00363 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99805 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47212 * 90.00409 * 20 19 18 22 22 C 1.53001 * 109.47066 * 294.99710 * 21 20 19 23 23 C 1.52997 * 109.47330 * 174.99668 * 21 20 19 24 24 C 1.38227 * 119.99709 * 0.25838 * 19 18 17 25 25 C 1.38234 * 120.00479 * 359.48988 * 24 19 18 26 26 H 1.08997 * 109.47094 * 60.00172 * 1 2 3 27 27 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47392 * 299.99815 * 1 2 3 29 29 H 1.08996 * 109.47392 * 240.00185 * 2 1 3 30 30 H 1.09004 * 109.47380 * 120.00043 * 2 1 3 31 31 H 1.09004 * 109.46594 * 59.99951 * 3 2 1 32 32 H 1.08997 * 109.46975 * 299.99900 * 3 2 1 33 33 H 0.97002 * 119.99802 * 179.97438 * 8 7 5 34 34 H 1.08001 * 119.99441 * 359.97438 * 17 16 13 35 35 H 1.08006 * 119.99804 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47317 * 329.99869 * 20 19 18 37 37 H 1.09003 * 109.47165 * 209.99805 * 20 19 18 38 38 H 1.08994 * 109.47602 * 54.99380 * 21 20 19 39 39 H 1.08997 * 109.47027 * 59.99963 * 22 21 20 40 40 H 1.09002 * 109.47263 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47061 * 300.00001 * 22 21 20 42 42 H 1.09002 * 109.47477 * 179.97438 * 23 21 20 43 43 H 1.08999 * 109.47088 * 299.99727 * 23 21 20 44 44 H 1.09005 * 109.47013 * 59.99866 * 23 21 20 45 45 H 1.08007 * 120.00072 * 179.73144 * 24 19 18 46 46 H 1.08000 * 120.00494 * 180.25262 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 0.9649 1.0864 6 1 5.1564 0.5027 0.9546 7 6 3.6398 1.0747 2.3563 8 7 2.7221 1.9863 2.5998 9 14 4.2026 -0.0713 3.7198 10 1 5.2349 -0.9993 3.1919 11 1 4.7767 0.7273 4.8324 12 1 3.0433 -0.8537 4.2190 13 16 4.3335 2.0202 -1.3117 14 8 3.4522 1.9136 -2.4213 15 8 5.6164 1.4102 -1.2766 16 6 4.5941 3.7427 -1.0471 17 6 5.7329 4.1773 -0.3950 18 6 5.9376 5.5285 -0.1879 19 6 5.0032 6.4453 -0.6323 20 6 5.2262 7.9184 -0.4059 21 6 5.9909 8.5069 -1.5933 22 6 7.3899 7.8906 -1.6548 23 6 6.1084 10.0228 -1.4234 24 6 3.8617 6.0103 -1.2790 25 6 3.6594 4.6594 -1.4909 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.3379 2.0628 3.4872 34 1 6.4627 3.4610 -0.0475 35 1 6.8276 5.8681 0.3211 36 1 5.8050 8.0623 0.5064 37 1 4.2638 8.4208 -0.3086 38 1 5.4554 8.2851 -2.5163 39 1 7.3062 6.8106 -1.7759 40 1 7.9349 8.3102 -2.5005 41 1 7.9256 8.1123 -0.7317 42 1 6.6536 10.4421 -2.2691 43 1 5.1117 10.4619 -1.3796 44 1 6.6441 10.2446 -0.5003 45 1 3.1295 6.7263 -1.6224 46 1 2.7694 4.3198 -1.9998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:24 Heat of formation + Delta-G solvation = -73.647213 kcal Electronic energy + Delta-G solvation = -26417.739029 eV Core-core repulsion = 22819.466494 eV Total energy + Delta-G solvation = -3598.272535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -39.07924 -36.35892 -36.09271 -35.82373 -34.41060 -32.57990 -31.23191 -31.08041 -30.48171 -27.23248 -26.41716 -26.00152 -23.82982 -22.27724 -21.57859 -20.54952 -19.94881 -18.47062 -17.50469 -16.71314 -16.26605 -15.54889 -15.09286 -14.84953 -14.54545 -14.33512 -14.17677 -13.87364 -13.84300 -13.33814 -13.05895 -12.95378 -12.77384 -12.32828 -12.26742 -11.98781 -11.88414 -11.79781 -11.60080 -11.51485 -11.10058 -10.98901 -10.96365 -10.81958 -10.79548 -10.72755 -10.63652 -10.56247 -10.50770 -10.40018 -10.05036 -9.72556 -9.59974 -9.34941 -8.46796 -8.43520 -7.87602 -6.51822 -4.10552 1.45254 1.85921 1.89132 3.07784 3.16203 3.23477 3.93364 4.06012 4.51975 4.75303 4.75861 4.79920 4.89772 5.11500 5.19607 5.31060 5.41655 5.44691 5.54326 5.60205 5.71052 5.77658 5.82515 5.83512 5.85048 5.87975 5.91780 6.01877 6.05266 6.16447 6.24195 6.27535 6.28562 6.35936 6.53499 6.56541 6.65537 6.73616 6.79295 6.89319 6.92712 6.96785 7.21976 7.35878 7.46572 7.59361 8.29884 8.70017 9.16363 10.37807 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014980 B = 0.004002 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.707607 B = 6995.101183 C = 7561.411098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.116 3.884 4 N -0.803 5.803 5 C -0.246 4.246 6 H 0.111 0.889 7 C 0.039 3.961 8 N -0.824 5.824 9 Si 0.918 3.082 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.276 1.276 13 S 2.539 3.461 14 O -1.005 7.005 15 O -0.986 6.986 16 C -0.652 4.652 17 C -0.020 4.020 18 C -0.142 4.142 19 C -0.053 4.053 20 C -0.078 4.078 21 C -0.091 4.091 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.030 4.030 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.273 0.727 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.117 0.883 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 9.161 -1.594 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.010 4.010 4 N -0.626 5.626 5 C -0.393 4.393 6 H 0.129 0.871 7 C -0.174 4.174 8 N -0.462 5.462 9 Si 0.744 3.256 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.201 1.201 13 S 2.640 3.360 14 O -0.994 6.994 15 O -0.976 6.976 16 C -0.731 4.731 17 C -0.039 4.039 18 C -0.161 4.161 19 C -0.053 4.053 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.209 4.209 23 C -0.203 4.203 24 C -0.165 4.165 25 C -0.049 4.049 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.135 0.865 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.044 8.952 -2.468 9.344 hybrid contribution 0.174 0.447 1.088 1.189 sum 1.218 9.399 -1.379 9.577 Atomic orbital electron populations 1.21693 0.96795 1.00556 1.01304 1.21652 0.94055 0.98483 1.01980 1.21511 0.79698 0.96691 1.03148 1.53804 1.12218 1.62351 1.34262 1.19839 1.05950 1.28762 0.84775 0.87126 1.25711 0.96906 0.96303 0.98497 1.69924 1.25418 1.28402 1.22459 0.85975 0.79271 0.80299 0.80087 1.18479 1.20426 1.20128 1.10612 0.73867 0.74257 0.77264 1.93338 1.65519 1.86785 1.53790 1.93347 1.41692 1.74965 1.87631 1.32264 1.01402 1.30288 1.09180 1.20844 0.94982 0.95618 0.92426 1.21058 0.99392 0.93344 1.02308 1.19888 0.94199 0.94965 0.96263 1.20717 1.00749 0.91598 0.98430 1.21077 0.96677 0.94808 0.98431 1.21939 0.95905 1.01759 1.01340 1.21847 1.01564 0.95296 1.01626 1.21007 0.97769 0.95872 1.01810 1.20795 0.97070 0.92614 0.94409 0.93293 0.93557 0.92868 0.93050 0.91307 0.87634 0.92575 0.91624 0.85095 0.86393 0.91023 0.91079 0.91113 0.91803 0.93023 0.92778 0.92763 0.92756 0.92709 0.86493 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 37.16 0.37 -1.99 16 2 C -0.12 -2.41 5.98 -26.73 -0.16 -2.57 16 3 C 0.12 2.54 5.12 -4.04 -0.02 2.52 16 4 N -0.80 -19.11 2.98 -59.91 -0.18 -19.28 16 5 C -0.25 -5.98 8.67 -15.06 -0.13 -6.11 16 6 H 0.11 2.73 7.34 -52.49 -0.39 2.35 16 7 C 0.04 0.91 4.63 -17.43 -0.08 0.83 16 8 N -0.82 -19.51 11.06 55.49 0.61 -18.90 16 9 Si 0.92 18.29 29.61 -169.99 -5.03 13.25 16 10 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 13 S 2.54 60.76 5.63 -107.50 -0.61 60.15 16 14 O -1.00 -25.14 15.92 -57.17 -0.91 -26.05 16 15 O -0.99 -25.63 16.14 -57.17 -0.92 -26.56 16 16 C -0.65 -14.18 5.97 -39.58 -0.24 -14.41 16 17 C -0.02 -0.40 9.52 -39.59 -0.38 -0.78 16 18 C -0.14 -2.44 7.96 -39.59 -0.32 -2.76 16 19 C -0.05 -0.84 4.71 -104.63 -0.49 -1.33 16 20 C -0.08 -0.94 4.84 -27.88 -0.14 -1.08 16 21 C -0.09 -0.99 2.91 -90.62 -0.26 -1.25 16 22 C -0.15 -1.68 8.76 37.16 0.33 -1.35 16 23 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 24 C -0.15 -2.47 9.70 -39.59 -0.38 -2.85 16 25 C -0.03 -0.59 9.52 -39.58 -0.38 -0.96 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.41 7.41 -51.93 -0.38 1.03 16 31 H 0.11 2.42 5.52 -51.93 -0.29 2.13 16 32 H 0.06 1.19 7.04 -51.93 -0.37 0.82 16 33 H 0.27 6.06 8.31 -40.82 -0.34 5.72 16 34 H 0.13 2.64 7.62 -52.49 -0.40 2.24 16 35 H 0.12 1.71 8.04 -52.48 -0.42 1.29 16 36 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.82 6.27 -51.93 -0.33 0.49 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 46 H 0.13 2.39 7.62 -52.49 -0.40 1.99 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -28.50 380.89 -10.83 -39.33 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.59 Total: 7.34 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: -1.94 Total: -35.03 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.44 Total: -38.18 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -1.83 Total: -52.60 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: 60.76 SS G_CDS: -0.61 Total: 60.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.50 -10.83 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.317 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds