Wall clock time and date at job start Tue Mar 31 2020 14:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47401 * 2 1 4 4 N 1.46500 * 109.47175 * 190.67756 * 3 2 1 5 5 C 1.36932 * 120.00212 * 277.90464 * 4 3 2 6 6 H 1.08006 * 119.99646 * 12.68062 * 5 4 3 7 7 C 1.38805 * 120.00301 * 192.67973 * 5 4 3 8 8 N 1.31623 * 119.99643 * 29.37892 * 7 5 4 9 9 Si 1.86799 * 120.00320 * 209.37881 * 7 5 4 10 10 H 1.48505 * 109.46958 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47571 * 120.00070 * 9 7 5 12 12 H 1.48506 * 109.47093 * 240.00160 * 9 7 5 13 13 C 1.46502 * 119.99714 * 97.90872 * 4 3 2 14 14 C 1.50700 * 109.47084 * 262.09483 * 13 4 3 15 15 C 1.38225 * 119.97000 * 266.63380 * 14 13 4 16 16 C 1.38509 * 120.08020 * 180.02562 * 15 14 13 17 17 O 1.36094 * 119.99603 * 179.97438 * 16 15 14 18 18 C 1.42902 * 116.99741 * 359.97438 * 17 16 15 19 19 C 1.39196 * 120.01095 * 0.26183 * 16 15 14 20 20 O 1.35988 * 120.03355 * 179.72794 * 19 16 15 21 21 C 1.42894 * 116.99919 * 180.02562 * 20 19 16 22 22 C 1.38464 * 119.93424 * 359.50432 * 19 16 15 23 23 C 1.38885 * 119.96766 * 86.64851 * 14 13 4 24 24 S 1.76200 * 120.00534 * 359.95778 * 23 14 13 25 25 C 1.81402 * 102.99986 * 180.02562 * 24 23 14 26 26 H 1.08996 * 109.46830 * 59.99707 * 1 2 3 27 27 H 1.08997 * 109.46621 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46520 * 300.00340 * 1 2 3 29 29 H 1.08994 * 109.47059 * 239.99603 * 2 1 3 30 30 H 1.09005 * 109.47024 * 119.99715 * 2 1 3 31 31 H 1.08995 * 109.47028 * 70.67539 * 3 2 1 32 32 H 1.09005 * 109.46747 * 310.67990 * 3 2 1 33 33 H 0.97005 * 119.99535 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46998 * 142.10089 * 13 4 3 35 35 H 1.08994 * 109.47416 * 22.09471 * 13 4 3 36 36 H 1.08001 * 119.96368 * 0.02562 * 15 14 13 37 37 H 1.08998 * 109.46663 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47145 * 60.00619 * 18 17 16 39 39 H 1.09000 * 109.47355 * 300.00174 * 18 17 16 40 40 H 1.09004 * 109.46630 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47135 * 299.99529 * 21 20 19 42 42 H 1.09000 * 109.47482 * 60.00197 * 21 20 19 43 43 H 1.07999 * 120.03895 * 180.24733 * 22 19 16 44 44 H 1.08996 * 109.46815 * 299.99600 * 25 24 23 45 45 H 1.08996 * 109.47190 * 59.99903 * 25 24 23 46 46 H 1.09000 * 109.46866 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4826 1.4504 -0.2559 5 6 4.3610 1.2188 0.7686 6 1 4.0019 0.8314 1.7107 7 6 5.7130 1.4818 0.5966 8 7 6.0988 2.4312 -0.2294 9 14 6.9850 0.4885 1.5372 10 1 6.2978 -0.5106 2.3945 11 1 7.8755 -0.2115 0.5770 12 1 7.7929 1.3984 2.3886 13 6 3.9852 1.7062 -1.6080 14 6 4.2995 0.3962 -2.2833 15 6 5.5804 -0.1203 -2.2261 16 6 5.8719 -1.3239 -2.8464 17 8 7.1338 -1.8306 -2.7895 18 6 8.1074 -1.0679 -2.0736 19 6 4.8760 -2.0125 -3.5331 20 8 5.1631 -3.1915 -4.1470 21 6 4.0925 -3.8429 -4.8336 22 6 3.5916 -1.4980 -3.5867 23 6 3.3020 -0.2910 -2.9628 24 16 1.6696 0.3684 -3.0342 25 6 0.7710 -0.8710 -4.0073 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.8406 1.8983 0.9697 32 1 1.5297 2.0083 -0.7794 33 1 7.0436 2.6153 -0.3494 34 1 4.8898 2.3117 -1.5509 35 1 3.2273 2.2385 -2.1827 36 1 6.3548 0.4153 -1.6971 37 1 9.0676 -1.5826 -2.1061 38 1 7.7901 -0.9551 -1.0370 39 1 8.2072 -0.0841 -2.5322 40 1 4.4560 -4.7700 -5.2768 41 1 3.2919 -4.0671 -4.1287 42 1 3.7129 -3.1888 -5.6186 43 1 2.8166 -2.0328 -4.1156 44 1 1.2295 -0.9620 -4.9920 45 1 0.8122 -1.8333 -3.4970 46 1 -0.2684 -0.5622 -4.1180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:28 Heat of formation + Delta-G solvation = -17.625783 kcal Electronic energy + Delta-G solvation = -27592.576541 eV Core-core repulsion = 23996.733278 eV Total energy + Delta-G solvation = -3595.843264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 9.06 seconds Orbital eigenvalues (eV) -40.04056 -38.02860 -37.16227 -35.49507 -33.04463 -31.00099 -30.33389 -29.89624 -28.44286 -27.34971 -26.89032 -25.52617 -25.18070 -22.20898 -21.75860 -20.69548 -19.98641 -18.19578 -17.12292 -16.70007 -16.33800 -15.70945 -15.53734 -14.99115 -14.87847 -14.49124 -14.42078 -14.04667 -13.77389 -13.70304 -13.47047 -13.12717 -12.96320 -12.83582 -12.45513 -12.24359 -11.92914 -11.74845 -11.58358 -11.27076 -11.11077 -11.02436 -10.91579 -10.87868 -10.66987 -10.58781 -10.33613 -10.21658 -10.04348 -9.75101 -9.61839 -9.49878 -8.61890 -8.32201 -7.73963 -6.84622 -6.51711 -5.72773 -3.18207 1.77365 1.95309 2.01122 2.86078 3.26060 3.39987 3.46741 3.58899 3.76982 4.21740 4.47689 5.12747 5.16490 5.18046 5.20560 5.23081 5.23616 5.48978 5.54058 5.59736 5.68304 5.71838 5.75380 5.82337 5.83583 5.84593 5.93779 6.02598 6.19044 6.24992 6.37097 6.42934 6.58852 6.64443 6.67974 6.73896 6.93164 7.08707 7.20054 7.29514 7.39212 7.45653 7.73726 7.85893 8.03817 8.44104 9.15801 9.83730 10.27190 11.16740 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.008082 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.571866 B = 3463.608692 C = 5714.333885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.147 4.147 3 C 0.152 3.848 4 N -0.577 5.577 5 C -0.224 4.224 6 H 0.072 0.928 7 C -0.010 4.010 8 N -0.889 5.889 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.278 1.278 12 H -0.293 1.293 13 C 0.141 3.859 14 C -0.031 4.031 15 C -0.132 4.132 16 C 0.088 3.912 17 O -0.314 6.314 18 C 0.018 3.982 19 C 0.089 3.911 20 O -0.310 6.310 21 C 0.030 3.970 22 C -0.191 4.191 23 C -0.095 4.095 24 S -0.083 6.083 25 C -0.163 4.163 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.253 0.747 34 H 0.148 0.852 35 H 0.036 0.964 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.125 0.875 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 -7.019 -8.433 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.188 4.188 3 C 0.026 3.974 4 N -0.294 5.294 5 C -0.353 4.353 6 H 0.090 0.910 7 C -0.206 4.206 8 N -0.537 5.537 9 Si 0.707 3.293 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.220 1.220 13 C 0.015 3.985 14 C -0.040 4.040 15 C -0.153 4.153 16 C 0.041 3.959 17 O -0.228 6.228 18 C -0.077 4.077 19 C 0.042 3.958 20 O -0.225 6.225 21 C -0.065 4.065 22 C -0.215 4.215 23 C -0.208 4.208 24 S 0.159 5.841 25 C -0.331 4.331 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.163 0.837 35 H 0.054 0.946 36 H 0.168 0.832 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.143 0.857 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.316 -6.195 -8.080 11.982 hybrid contribution 0.966 -1.904 -0.003 2.135 sum -5.349 -8.099 -8.083 12.631 Atomic orbital electron populations 1.21673 0.97575 0.99941 1.00592 1.22333 0.93696 1.00663 1.02098 1.20905 0.84399 0.93856 0.98279 1.44011 1.00270 1.81409 1.03752 1.19286 0.88174 1.33867 0.93997 0.90991 1.24475 0.97200 0.98812 1.00156 1.69593 1.14712 1.28852 1.40497 0.86657 0.82198 0.80818 0.79598 1.20422 1.20547 1.22020 1.20936 1.03562 0.91235 0.82749 1.20623 0.90174 0.99913 0.93250 1.21287 0.99024 0.94227 1.00811 1.18389 0.83983 0.93897 0.99655 1.86067 1.16589 1.48280 1.71871 1.23269 0.90820 0.96348 0.97240 1.17872 0.91781 0.87434 0.98695 1.86130 1.36528 1.33168 1.66630 1.22925 0.90636 0.97151 0.95811 1.20802 0.95230 0.98209 1.07276 1.21273 0.97314 0.97786 1.04432 1.85650 1.02017 1.31137 1.65299 1.23704 1.03731 1.02884 1.02818 0.93101 0.94308 0.93965 0.90625 0.93775 0.94430 0.93746 0.93577 0.83681 0.94615 0.83208 0.89017 0.91707 0.92746 0.88784 0.93313 0.93338 0.85710 0.90786 0.90558 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.86 37.16 0.37 -1.73 16 2 C -0.15 -2.75 5.36 -26.73 -0.14 -2.90 16 3 C 0.15 3.13 5.04 -4.04 -0.02 3.11 16 4 N -0.58 -13.74 2.56 -174.61 -0.45 -14.19 16 5 C -0.22 -5.84 9.53 -15.06 -0.14 -5.98 16 6 H 0.07 1.91 7.98 -52.48 -0.42 1.49 16 7 C -0.01 -0.27 3.70 -17.43 -0.06 -0.33 16 8 N -0.89 -23.27 9.78 55.49 0.54 -22.72 16 9 Si 0.88 20.49 29.49 -169.99 -5.01 15.47 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.13 4.85 56.52 0.27 -5.86 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.14 3.27 4.91 -5.19 -0.03 3.25 16 14 C -0.03 -0.68 5.41 -104.39 -0.56 -1.24 16 15 C -0.13 -2.91 8.24 -39.49 -0.33 -3.24 16 16 C 0.09 1.84 6.70 -39.13 -0.26 1.58 16 17 O -0.31 -6.33 10.28 -34.63 -0.36 -6.69 16 18 C 0.02 0.32 9.81 101.05 0.99 1.31 16 19 C 0.09 1.71 6.70 -39.14 -0.26 1.45 16 20 O -0.31 -5.43 10.28 -34.29 -0.35 -5.78 16 21 C 0.03 0.36 9.81 101.05 0.99 1.36 16 22 C -0.19 -3.36 8.35 -39.24 -0.33 -3.69 16 23 C -0.09 -1.82 5.22 -39.09 -0.20 -2.02 16 24 S -0.08 -1.34 16.20 -107.50 -1.74 -3.08 16 25 C -0.16 -1.90 9.15 101.05 0.92 -0.97 16 26 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.49 4.81 -48.35 -0.23 1.26 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.04 0.87 7.04 -51.93 -0.37 0.50 16 33 H 0.25 6.39 8.31 -40.82 -0.34 6.05 16 34 H 0.15 3.76 4.54 -52.51 -0.24 3.52 16 35 H 0.04 0.79 6.52 -51.93 -0.34 0.45 16 36 H 0.15 3.46 4.53 -52.49 -0.24 3.23 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.26 5.23 -51.93 -0.27 0.99 16 39 H 0.05 0.91 7.66 -51.93 -0.40 0.51 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 42 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 43 H 0.13 1.81 4.10 -52.49 -0.22 1.59 16 44 H 0.07 0.79 7.74 -51.93 -0.40 0.39 16 45 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 46 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -28.39 361.87 -7.93 -36.32 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.95 Total: 5.27 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 0.93 Total: -10.06 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.10 Total: -36.91 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.71 Total: -12.47 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.01 Total: 15.47 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -1.74 Total: -3.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.39 -7.93 -36.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.693 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.06 seconds