Wall clock time and date at job start Tue Mar 31 2020 14:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47401 * 2 1 4 4 N 1.46500 * 109.47175 * 190.67756 * 3 2 1 5 5 C 1.36932 * 120.00212 * 277.90464 * 4 3 2 6 6 H 1.08006 * 119.99646 * 12.68062 * 5 4 3 7 7 C 1.38805 * 120.00301 * 192.67973 * 5 4 3 8 8 N 1.31623 * 119.99643 * 29.37892 * 7 5 4 9 9 Si 1.86799 * 120.00320 * 209.37881 * 7 5 4 10 10 H 1.48505 * 109.46958 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47571 * 120.00070 * 9 7 5 12 12 H 1.48506 * 109.47093 * 240.00160 * 9 7 5 13 13 C 1.46502 * 119.99714 * 97.90872 * 4 3 2 14 14 C 1.50700 * 109.47084 * 262.09483 * 13 4 3 15 15 C 1.38225 * 119.97000 * 266.63380 * 14 13 4 16 16 C 1.38509 * 120.08020 * 180.02562 * 15 14 13 17 17 O 1.36094 * 119.99603 * 179.97438 * 16 15 14 18 18 C 1.42902 * 116.99741 * 359.97438 * 17 16 15 19 19 C 1.39196 * 120.01095 * 0.26183 * 16 15 14 20 20 O 1.35988 * 120.03355 * 179.72794 * 19 16 15 21 21 C 1.42894 * 116.99919 * 180.02562 * 20 19 16 22 22 C 1.38464 * 119.93424 * 359.50432 * 19 16 15 23 23 C 1.38885 * 119.96766 * 86.64851 * 14 13 4 24 24 S 1.76200 * 120.00534 * 359.95778 * 23 14 13 25 25 C 1.81402 * 102.99986 * 180.02562 * 24 23 14 26 26 H 1.08996 * 109.46830 * 59.99707 * 1 2 3 27 27 H 1.08997 * 109.46621 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46520 * 300.00340 * 1 2 3 29 29 H 1.08994 * 109.47059 * 239.99603 * 2 1 3 30 30 H 1.09005 * 109.47024 * 119.99715 * 2 1 3 31 31 H 1.08995 * 109.47028 * 70.67539 * 3 2 1 32 32 H 1.09005 * 109.46747 * 310.67990 * 3 2 1 33 33 H 0.97005 * 119.99535 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46998 * 142.10089 * 13 4 3 35 35 H 1.08994 * 109.47416 * 22.09471 * 13 4 3 36 36 H 1.08001 * 119.96368 * 0.02562 * 15 14 13 37 37 H 1.08998 * 109.46663 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47145 * 60.00619 * 18 17 16 39 39 H 1.09000 * 109.47355 * 300.00174 * 18 17 16 40 40 H 1.09004 * 109.46630 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47135 * 299.99529 * 21 20 19 42 42 H 1.09000 * 109.47482 * 60.00197 * 21 20 19 43 43 H 1.07999 * 120.03895 * 180.24733 * 22 19 16 44 44 H 1.08996 * 109.46815 * 299.99600 * 25 24 23 45 45 H 1.08996 * 109.47190 * 59.99903 * 25 24 23 46 46 H 1.09000 * 109.46866 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4826 1.4504 -0.2559 5 6 4.3610 1.2188 0.7686 6 1 4.0019 0.8314 1.7107 7 6 5.7130 1.4818 0.5966 8 7 6.0988 2.4312 -0.2294 9 14 6.9850 0.4885 1.5372 10 1 6.2978 -0.5106 2.3945 11 1 7.8755 -0.2115 0.5770 12 1 7.7929 1.3984 2.3886 13 6 3.9852 1.7062 -1.6080 14 6 4.2995 0.3962 -2.2833 15 6 5.5804 -0.1203 -2.2261 16 6 5.8719 -1.3239 -2.8464 17 8 7.1338 -1.8306 -2.7895 18 6 8.1074 -1.0679 -2.0736 19 6 4.8760 -2.0125 -3.5331 20 8 5.1631 -3.1915 -4.1470 21 6 4.0925 -3.8429 -4.8336 22 6 3.5916 -1.4980 -3.5867 23 6 3.3020 -0.2910 -2.9628 24 16 1.6696 0.3684 -3.0342 25 6 0.7710 -0.8710 -4.0073 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.8406 1.8983 0.9697 32 1 1.5297 2.0083 -0.7794 33 1 7.0436 2.6153 -0.3494 34 1 4.8898 2.3117 -1.5509 35 1 3.2273 2.2385 -2.1827 36 1 6.3548 0.4153 -1.6971 37 1 9.0676 -1.5826 -2.1061 38 1 7.7901 -0.9551 -1.0370 39 1 8.2072 -0.0841 -2.5322 40 1 4.4560 -4.7700 -5.2768 41 1 3.2919 -4.0671 -4.1287 42 1 3.7129 -3.1888 -5.6186 43 1 2.8166 -2.0328 -4.1156 44 1 1.2295 -0.9620 -4.9920 45 1 0.8122 -1.8333 -3.4970 46 1 -0.2684 -0.5622 -4.1180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:17 Heat of formation + Delta-G solvation = -32.458298 kcal Electronic energy + Delta-G solvation = -27593.219727 eV Core-core repulsion = 23996.733278 eV Total energy + Delta-G solvation = -3596.486450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 8.42 seconds Orbital eigenvalues (eV) -41.47618 -39.39621 -38.77417 -37.07179 -34.69702 -32.72256 -31.73957 -31.41099 -29.48946 -28.68659 -28.13724 -27.25885 -26.73187 -23.80976 -23.21468 -22.20263 -21.66112 -19.56796 -18.82853 -18.28775 -17.81217 -17.06184 -16.85477 -16.76160 -16.25139 -16.00525 -15.75110 -15.47634 -15.37846 -15.13885 -14.85735 -14.45699 -14.25327 -14.21586 -13.70266 -13.57088 -13.26253 -13.23341 -13.10902 -12.78998 -12.64738 -12.50224 -12.44956 -12.30552 -12.16896 -12.04869 -11.90757 -11.79638 -11.70896 -11.61191 -11.15523 -10.87626 -10.50046 -9.83959 -9.14856 -8.74490 -7.87043 -7.67122 -5.16669 0.27899 0.47127 0.75097 1.37990 1.45485 1.54181 1.68278 2.34606 2.38016 2.53010 2.70048 3.24650 3.84236 3.88842 4.09073 4.18141 4.25907 4.32720 4.33858 4.35432 4.37205 4.38229 4.39993 4.50064 4.56940 4.61028 4.68067 4.71219 4.78166 4.89063 4.91192 4.93654 5.00241 5.06231 5.24830 5.35300 5.36625 5.58375 5.59188 5.66057 5.78495 5.83466 5.98842 6.09714 6.52750 6.61521 7.21210 7.95653 8.35373 9.18013 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.008082 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.571866 B = 3463.608692 C = 5714.333885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 C 0.152 3.848 4 N -0.588 5.588 5 C -0.240 4.240 6 H 0.058 0.942 7 C -0.035 4.035 8 N -0.903 5.903 9 Si 0.912 3.088 10 H -0.288 1.288 11 H -0.261 1.261 12 H -0.297 1.297 13 C 0.150 3.850 14 C -0.058 4.058 15 C -0.147 4.147 16 C 0.062 3.938 17 O -0.323 6.323 18 C 0.019 3.981 19 C 0.092 3.908 20 O -0.328 6.328 21 C 0.018 3.982 22 C -0.184 4.184 23 C -0.094 4.094 24 S -0.105 6.105 25 C -0.153 4.153 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.252 0.748 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.122 0.878 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.162 0.838 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.162 -9.094 -10.340 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.177 4.177 3 C 0.026 3.974 4 N -0.306 5.306 5 C -0.371 4.371 6 H 0.076 0.924 7 C -0.230 4.230 8 N -0.551 5.551 9 Si 0.743 3.257 10 H -0.214 1.214 11 H -0.187 1.187 12 H -0.224 1.224 13 C 0.024 3.976 14 C -0.066 4.066 15 C -0.168 4.168 16 C 0.015 3.985 17 O -0.238 6.238 18 C -0.076 4.076 19 C 0.045 3.955 20 O -0.243 6.243 21 C -0.077 4.077 22 C -0.208 4.208 23 C -0.207 4.207 24 S 0.138 5.862 25 C -0.321 4.321 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.135 0.865 35 H 0.057 0.943 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.179 0.821 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.367 -8.277 -10.006 15.448 hybrid contribution 1.498 -1.316 0.494 2.055 sum -6.869 -9.593 -9.513 15.156 Atomic orbital electron populations 1.21583 0.94343 1.01366 1.01505 1.22171 0.96387 0.98569 1.00550 1.21001 0.83052 0.95359 0.97961 1.44134 1.01223 1.81658 1.03610 1.19321 0.89106 1.34282 0.94341 0.92395 1.24846 0.98013 0.99194 1.00975 1.69725 1.14669 1.29440 1.41270 0.86137 0.81014 0.79670 0.78919 1.21416 1.18685 1.22447 1.20622 1.02217 0.92008 0.82724 1.20449 0.91102 0.99818 0.95235 1.21161 0.98992 0.95036 1.01606 1.18586 0.84853 0.94179 1.00842 1.86041 1.16701 1.48802 1.72213 1.23368 0.91647 0.97002 0.95550 1.18038 0.91769 0.87889 0.97794 1.86113 1.39152 1.32336 1.66700 1.23344 0.90017 0.98155 0.96155 1.21133 0.95491 0.97591 1.06588 1.21472 0.98373 0.97850 1.03026 1.85657 1.00602 1.33342 1.66631 1.23839 1.04259 1.01490 1.02495 0.91939 0.92587 0.93308 0.91344 0.96078 0.95499 0.92688 0.93758 0.86526 0.94291 0.85164 0.85460 0.94032 0.92750 0.86024 0.92132 0.91673 0.82081 0.89258 0.89554 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.86 71.98 0.71 -2.86 16 2 C -0.14 -5.01 5.36 30.60 0.16 -4.85 16 3 C 0.15 6.30 5.04 86.38 0.43 6.74 16 4 N -0.59 -28.85 2.56 -706.36 -1.81 -30.65 16 5 C -0.24 -13.05 9.53 84.03 0.80 -12.25 16 6 H 0.06 3.22 7.98 -2.91 -0.02 3.20 16 7 C -0.04 -1.88 3.70 84.86 0.31 -1.56 16 8 N -0.90 -49.24 9.78 21.65 0.21 -49.03 16 9 Si 0.91 43.31 29.49 68.60 2.02 45.33 16 10 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 11 H -0.26 -11.54 4.85 99.48 0.48 -11.06 16 12 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 13 C 0.15 7.18 4.91 85.63 0.42 7.60 16 14 C -0.06 -2.57 5.41 -19.71 -0.11 -2.67 16 15 C -0.15 -6.68 8.24 22.33 0.18 -6.49 16 16 C 0.06 2.65 6.70 22.56 0.15 2.80 16 17 O -0.32 -13.08 10.28 -80.67 -0.83 -13.91 16 18 C 0.02 0.67 9.81 113.37 1.11 1.78 16 19 C 0.09 3.42 6.70 22.55 0.15 3.58 16 20 O -0.33 -10.74 10.28 -79.46 -0.82 -11.56 16 21 C 0.02 0.35 9.81 113.37 1.11 1.46 16 22 C -0.18 -6.03 8.35 22.49 0.19 -5.84 16 23 C -0.09 -3.49 5.22 22.59 0.12 -3.37 16 24 S -0.10 -3.13 16.20 -56.49 -0.91 -4.04 16 25 C -0.15 -2.81 9.15 113.37 1.04 -1.77 16 26 H 0.06 1.57 7.95 -2.39 -0.02 1.56 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.07 2.62 4.81 -4.67 -0.02 2.60 16 30 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.03 1.14 8.10 -2.39 -0.02 1.13 16 32 H 0.05 2.14 7.04 -2.38 -0.02 2.12 16 33 H 0.25 13.25 8.31 -92.70 -0.77 12.48 16 34 H 0.12 6.35 4.54 -3.54 -0.02 6.33 16 35 H 0.04 1.77 6.52 -2.39 -0.02 1.76 16 36 H 0.13 6.34 4.53 -2.91 -0.01 6.33 16 37 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.04 1.65 5.23 -2.39 -0.01 1.63 16 39 H 0.05 1.88 7.66 -2.39 -0.02 1.86 16 40 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.06 1.08 7.65 -2.39 -0.02 1.06 16 42 H 0.06 1.10 7.67 -2.39 -0.02 1.08 16 43 H 0.16 3.95 4.10 -2.91 -0.01 3.94 16 44 H 0.09 1.44 7.74 -2.39 -0.02 1.42 16 45 H 0.09 1.48 7.75 -2.39 -0.02 1.47 16 46 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -64.55 361.87 5.41 -59.15 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.75 Total: 22.43 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 6.79 Total: -17.72 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -1.59 Total: -79.69 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.65 Total: -25.47 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.02 Total: 45.33 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -0.91 Total: -4.04 kcal Total: -64.55 5.41 -59.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.690 kcal (2) G-P(sol) polarization free energy of solvation -64.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.42 seconds