Wall clock time and date at job start Tue Mar 31 2020 14:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46838 * 2 1 4 4 H 1.09004 * 109.47536 * 303.32834 * 3 2 1 5 5 C 1.52998 * 109.46990 * 183.32157 * 3 2 1 6 6 C 1.50709 * 109.46775 * 175.00173 * 5 3 2 7 7 C 1.38234 * 119.99832 * 90.00361 * 6 5 3 8 8 C 1.38225 * 119.99908 * 180.02562 * 7 6 5 9 9 C 1.38236 * 120.00232 * 0.02562 * 8 7 6 10 10 C 1.38232 * 119.99843 * 0.25111 * 9 8 7 11 11 C 1.38231 * 119.99785 * 270.02202 * 6 5 3 12 12 N 1.46499 * 109.46847 * 63.32565 * 3 2 1 13 13 S 1.65600 * 119.99934 * 234.71430 * 12 3 2 14 14 O 1.42109 * 104.27902 * 181.30232 * 13 12 3 15 15 O 1.42103 * 104.27839 * 309.15605 * 13 12 3 16 16 C 1.81396 * 104.45278 * 65.22828 * 13 12 3 17 17 C 1.53004 * 109.47396 * 175.36641 * 16 13 12 18 18 C 1.53001 * 109.47165 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.46928 * 180.02562 * 18 17 16 20 20 H 1.07990 * 119.99940 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99489 * 180.02562 * 19 18 17 22 22 N 1.31505 * 120.00318 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99540 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47092 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47046 * 119.99548 * 23 21 19 26 26 H 1.48502 * 109.47108 * 239.99858 * 23 21 19 27 27 H 1.09001 * 109.47642 * 64.35566 * 1 2 3 28 28 H 1.09004 * 109.46971 * 184.35353 * 1 2 3 29 29 H 1.08996 * 109.47384 * 304.35315 * 1 2 3 30 30 H 1.09001 * 109.47190 * 240.00588 * 2 1 3 31 31 H 1.08993 * 109.47384 * 120.00109 * 2 1 3 32 32 H 1.09001 * 109.46947 * 55.00746 * 5 3 2 33 33 H 1.08997 * 109.47110 * 294.99983 * 5 3 2 34 34 H 1.08003 * 119.99703 * 359.97438 * 7 6 5 35 35 H 1.08003 * 120.00374 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.00059 * 179.97438 * 9 8 7 37 37 H 1.08007 * 120.00109 * 179.72529 * 10 9 8 38 38 H 1.07999 * 120.00540 * 0.02562 * 11 6 5 39 39 H 0.97002 * 120.00475 * 54.71038 * 12 3 2 40 40 H 1.09001 * 109.47008 * 295.37056 * 16 13 12 41 41 H 1.09008 * 109.46943 * 55.36978 * 16 13 12 42 42 H 1.08997 * 109.46897 * 300.00267 * 17 16 13 43 43 H 1.09006 * 109.46285 * 60.00224 * 17 16 13 44 44 H 1.08992 * 109.47352 * 300.00731 * 18 17 16 45 45 H 1.09008 * 109.46820 * 60.00553 * 18 17 16 46 46 H 0.97004 * 119.99990 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6287 1.9734 -0.8587 5 6 3.5676 1.4434 -0.0836 6 6 4.0631 2.8613 -0.2073 7 6 4.3556 3.5928 0.9286 8 6 4.8095 4.8935 0.8152 9 6 4.9705 5.4630 -0.4341 10 6 4.6726 4.7334 -1.5698 11 6 4.2247 3.4305 -1.4566 12 7 1.6181 2.1096 1.2342 13 16 0.7706 3.5303 1.1595 14 8 0.5670 3.8889 2.5195 15 8 1.5400 4.3522 0.2925 16 6 -0.8028 3.0783 0.3781 17 6 -1.7296 4.2956 0.3559 18 6 -3.0564 3.9145 -0.3038 19 6 -3.9689 5.1136 -0.3262 20 1 -3.6359 6.0533 0.0890 21 6 -5.2292 5.0106 -0.8758 22 7 -5.6348 3.8661 -1.3809 23 14 -6.3600 6.4971 -0.9042 24 1 -5.6715 7.6549 -0.2790 25 1 -6.7081 6.8275 -2.3095 26 1 -7.5996 6.1907 -0.1460 27 1 -0.3634 0.4447 -0.9264 28 1 -0.3633 -1.0247 0.0780 29 1 -0.3634 0.5799 0.8484 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8841 0.8706 -0.9553 33 1 3.9811 0.9914 0.8180 34 1 4.2286 3.1483 1.9047 35 1 5.0377 5.4652 1.7027 36 1 5.3248 6.4793 -0.5226 37 1 4.7941 5.1798 -2.5457 38 1 3.9955 2.8592 -2.3440 39 1 1.8351 1.7190 2.0952 40 1 -0.6185 2.7433 -0.6427 41 1 -1.2724 2.2745 0.9451 42 1 -1.9138 4.6305 1.3766 43 1 -1.2599 5.0994 -0.2112 44 1 -2.8717 3.5797 -1.3245 45 1 -3.5262 3.1105 0.2629 46 1 -6.5213 3.7938 -1.7679 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109342738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:19 Heat of formation + Delta-G solvation = -76.269332 kcal Electronic energy + Delta-G solvation = -26271.659796 eV Core-core repulsion = 22673.273558 eV Total energy + Delta-G solvation = -3598.386239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.41222 -37.34885 -36.69448 -35.60908 -34.67624 -32.47438 -32.14154 -31.68822 -30.73401 -28.20541 -27.72537 -24.24600 -23.68074 -22.47537 -21.44030 -20.94054 -20.60908 -19.24618 -17.45510 -16.76791 -16.57112 -16.26173 -15.70212 -15.37829 -15.13262 -14.81652 -14.66331 -14.44506 -14.14800 -14.00621 -13.36967 -13.27977 -12.88580 -12.59859 -12.44227 -12.32142 -12.06791 -11.88503 -11.75868 -11.72056 -11.71869 -11.59822 -11.19397 -11.15431 -11.05432 -10.92521 -10.88555 -10.86368 -10.74474 -10.36368 -9.93800 -9.72846 -9.31109 -9.06447 -8.73521 -8.50420 -8.40857 -6.05603 -4.08345 0.55370 1.50793 1.57469 2.92459 3.29384 3.36920 3.42055 3.89490 4.03088 4.42657 4.44888 4.48224 4.74790 4.80484 4.93928 5.01202 5.05906 5.11219 5.17078 5.20278 5.22179 5.30435 5.32668 5.42993 5.57247 5.61571 5.65961 5.70916 5.78836 5.84262 5.89814 6.08458 6.16083 6.17995 6.20456 6.29140 6.47747 6.58260 6.65047 6.71381 6.88455 6.98761 7.17208 7.57731 7.67750 7.92754 8.33630 8.98134 9.56407 11.05652 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.003402 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.361855 B = 8228.327590 C = 9069.906969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C 0.159 3.841 4 H 0.090 0.910 5 C -0.089 4.089 6 C -0.073 4.073 7 C -0.108 4.108 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.113 4.113 11 C -0.111 4.111 12 N -1.115 6.115 13 S 2.593 3.407 14 O -0.968 6.968 15 O -0.943 6.943 16 C -0.615 4.615 17 C -0.104 4.104 18 C 0.031 3.969 19 C -0.525 4.525 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.412 0.588 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.624 -8.378 1.990 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.172 4.172 3 C 0.051 3.949 4 H 0.108 0.892 5 C -0.128 4.128 6 C -0.073 4.073 7 C -0.126 4.126 8 C -0.131 4.131 9 C -0.138 4.138 10 C -0.131 4.131 11 C -0.129 4.129 12 N -0.872 5.872 13 S 2.688 3.312 14 O -0.958 6.958 15 O -0.933 6.933 16 C -0.746 4.746 17 C -0.143 4.143 18 C -0.007 4.007 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.721 3.279 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.246 0.754 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.770 -7.540 2.040 23.129 hybrid contribution -1.208 0.097 0.018 1.212 sum 20.562 -7.443 2.058 21.964 Atomic orbital electron populations 1.21978 0.95092 1.02419 1.02693 1.21926 0.96799 0.95618 1.02808 1.20809 0.93871 0.93776 0.86437 0.89192 1.21001 0.94992 0.93653 1.03182 1.19611 0.98753 0.95584 0.93345 1.20874 0.99455 0.94637 0.97637 1.21026 0.99476 0.95289 0.97333 1.21023 1.00583 0.99360 0.92836 1.21018 0.99320 0.94523 0.98238 1.20893 0.99858 0.95508 0.96601 1.55796 1.72551 1.45366 1.13508 1.05550 0.76811 0.73686 0.75134 1.93569 1.86892 1.81377 1.33987 1.93640 1.66597 1.64635 1.68400 1.30735 1.19961 1.10432 1.13487 1.21470 0.98042 0.92489 1.02310 1.19056 0.88896 0.97089 0.95666 1.21297 0.99167 0.96962 1.38908 0.92358 1.25011 0.98084 0.96009 0.95241 1.69964 1.19225 1.24410 1.39837 0.86516 0.80670 0.83006 0.77741 1.19594 1.20934 1.20940 0.92032 0.92262 0.92204 0.90716 0.91248 0.90006 0.90520 0.86995 0.86738 0.86726 0.86606 0.86616 0.75408 0.85655 0.85447 0.91683 0.91794 0.96164 0.96173 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.17 37.16 0.34 -1.14 16 2 C -0.13 -0.95 5.62 -26.73 -0.15 -1.10 16 3 C 0.16 1.40 2.15 -67.93 -0.15 1.26 16 4 H 0.09 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.09 -0.73 5.03 -27.88 -0.14 -0.87 16 6 C -0.07 -0.82 3.93 -104.62 -0.41 -1.23 16 7 C -0.11 -1.31 8.36 -39.59 -0.33 -1.64 16 8 C -0.11 -1.42 10.05 -39.59 -0.40 -1.81 16 9 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 10 C -0.11 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 12 N -1.12 -11.42 3.96 -4.89 -0.02 -11.44 16 13 S 2.59 38.26 5.31 -107.50 -0.57 37.69 16 14 O -0.97 -17.42 18.08 -57.54 -1.04 -18.46 16 15 O -0.94 -15.97 15.67 -57.54 -0.90 -16.87 16 16 C -0.62 -9.61 4.94 37.16 0.18 -9.42 16 17 C -0.10 -2.14 5.16 -26.73 -0.14 -2.27 16 18 C 0.03 0.79 4.97 -27.88 -0.14 0.66 16 19 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 23 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 5.53 -51.93 -0.29 0.28 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.11 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.41 3.41 8.92 -34.47 -0.31 3.11 16 40 H 0.13 1.75 7.78 -51.92 -0.40 1.35 16 41 H 0.13 1.80 6.71 -51.92 -0.35 1.45 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -35.25 384.94 -11.55 -46.79 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.61 Total: 2.19 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: -2.92 Total: -36.49 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.72 Total: -37.29 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.94 Total: -35.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 38.26 SS G_CDS: -0.57 Total: 37.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.25 -11.55 -46.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109342738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.478 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds