Wall clock time and date at job start Tue Mar 31 2020 14:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46838 * 2 1 4 4 H 1.09004 * 109.47536 * 303.32834 * 3 2 1 5 5 C 1.52998 * 109.46990 * 183.32157 * 3 2 1 6 6 C 1.50709 * 109.46775 * 175.00173 * 5 3 2 7 7 C 1.38234 * 119.99832 * 90.00361 * 6 5 3 8 8 C 1.38225 * 119.99908 * 180.02562 * 7 6 5 9 9 C 1.38236 * 120.00232 * 0.02562 * 8 7 6 10 10 C 1.38232 * 119.99843 * 0.25111 * 9 8 7 11 11 C 1.38231 * 119.99785 * 270.02202 * 6 5 3 12 12 N 1.46499 * 109.46847 * 63.32565 * 3 2 1 13 13 S 1.65600 * 119.99934 * 234.71430 * 12 3 2 14 14 O 1.42109 * 104.27902 * 181.30232 * 13 12 3 15 15 O 1.42103 * 104.27839 * 309.15605 * 13 12 3 16 16 C 1.81396 * 104.45278 * 65.22828 * 13 12 3 17 17 C 1.53004 * 109.47396 * 175.36641 * 16 13 12 18 18 C 1.53001 * 109.47165 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.46928 * 180.02562 * 18 17 16 20 20 H 1.07990 * 119.99940 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99489 * 180.02562 * 19 18 17 22 22 N 1.31505 * 120.00318 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99540 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47092 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47046 * 119.99548 * 23 21 19 26 26 H 1.48502 * 109.47108 * 239.99858 * 23 21 19 27 27 H 1.09001 * 109.47642 * 64.35566 * 1 2 3 28 28 H 1.09004 * 109.46971 * 184.35353 * 1 2 3 29 29 H 1.08996 * 109.47384 * 304.35315 * 1 2 3 30 30 H 1.09001 * 109.47190 * 240.00588 * 2 1 3 31 31 H 1.08993 * 109.47384 * 120.00109 * 2 1 3 32 32 H 1.09001 * 109.46947 * 55.00746 * 5 3 2 33 33 H 1.08997 * 109.47110 * 294.99983 * 5 3 2 34 34 H 1.08003 * 119.99703 * 359.97438 * 7 6 5 35 35 H 1.08003 * 120.00374 * 179.97438 * 8 7 6 36 36 H 1.08000 * 120.00059 * 179.97438 * 9 8 7 37 37 H 1.08007 * 120.00109 * 179.72529 * 10 9 8 38 38 H 1.07999 * 120.00540 * 0.02562 * 11 6 5 39 39 H 0.97002 * 120.00475 * 54.71038 * 12 3 2 40 40 H 1.09001 * 109.47008 * 295.37056 * 16 13 12 41 41 H 1.09008 * 109.46943 * 55.36978 * 16 13 12 42 42 H 1.08997 * 109.46897 * 300.00267 * 17 16 13 43 43 H 1.09006 * 109.46285 * 60.00224 * 17 16 13 44 44 H 1.08992 * 109.47352 * 300.00731 * 18 17 16 45 45 H 1.09008 * 109.46820 * 60.00553 * 18 17 16 46 46 H 0.97004 * 119.99990 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6287 1.9734 -0.8587 5 6 3.5676 1.4434 -0.0836 6 6 4.0631 2.8613 -0.2073 7 6 4.3556 3.5928 0.9286 8 6 4.8095 4.8935 0.8152 9 6 4.9705 5.4630 -0.4341 10 6 4.6726 4.7334 -1.5698 11 6 4.2247 3.4305 -1.4566 12 7 1.6181 2.1096 1.2342 13 16 0.7706 3.5303 1.1595 14 8 0.5670 3.8889 2.5195 15 8 1.5400 4.3522 0.2925 16 6 -0.8028 3.0783 0.3781 17 6 -1.7296 4.2956 0.3559 18 6 -3.0564 3.9145 -0.3038 19 6 -3.9689 5.1136 -0.3262 20 1 -3.6359 6.0533 0.0890 21 6 -5.2292 5.0106 -0.8758 22 7 -5.6348 3.8661 -1.3809 23 14 -6.3600 6.4971 -0.9042 24 1 -5.6715 7.6549 -0.2790 25 1 -6.7081 6.8275 -2.3095 26 1 -7.5996 6.1907 -0.1460 27 1 -0.3634 0.4447 -0.9264 28 1 -0.3633 -1.0247 0.0780 29 1 -0.3634 0.5799 0.8484 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8841 0.8706 -0.9553 33 1 3.9811 0.9914 0.8180 34 1 4.2286 3.1483 1.9047 35 1 5.0377 5.4652 1.7027 36 1 5.3248 6.4793 -0.5226 37 1 4.7941 5.1798 -2.5457 38 1 3.9955 2.8592 -2.3440 39 1 1.8351 1.7190 2.0952 40 1 -0.6185 2.7433 -0.6427 41 1 -1.2724 2.2745 0.9451 42 1 -1.9138 4.6305 1.3766 43 1 -1.2599 5.0994 -0.2112 44 1 -2.8717 3.5797 -1.3245 45 1 -3.5262 3.1105 0.2629 46 1 -6.5213 3.7938 -1.7679 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109342738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:17 Heat of formation + Delta-G solvation = -98.441059 kcal Electronic energy + Delta-G solvation = -26272.621234 eV Core-core repulsion = 22673.273558 eV Total energy + Delta-G solvation = -3599.347677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.22066 -38.23198 -37.89520 -36.91545 -36.48939 -34.20739 -33.15453 -32.51738 -31.58865 -29.69324 -28.87275 -25.66464 -24.89936 -23.34446 -22.50187 -22.05342 -21.70671 -20.39233 -18.73104 -18.45774 -17.62348 -17.27091 -17.11262 -16.55141 -16.41175 -15.96764 -15.76031 -15.51090 -15.31391 -14.90557 -14.48200 -14.16680 -14.07059 -14.06460 -13.67505 -13.55541 -13.37898 -13.08364 -13.00571 -12.96056 -12.84315 -12.77364 -12.63233 -12.51171 -12.41660 -12.14959 -11.87120 -11.82958 -11.70609 -11.67566 -11.55338 -11.34765 -11.06573 -10.59154 -10.37879 -9.62386 -9.35316 -8.23908 -6.34860 -0.66313 0.64357 0.68633 1.38441 1.39142 1.52443 1.86951 2.38802 2.81992 3.03463 3.09582 3.30775 3.70768 3.77919 3.91058 4.05108 4.09540 4.24644 4.26755 4.34178 4.36417 4.38644 4.42522 4.54363 4.64897 4.76766 4.79382 4.84011 4.92040 4.98365 5.03260 5.06264 5.09624 5.26010 5.32272 5.37238 5.43519 5.45795 5.53399 5.61297 5.71539 5.77347 5.78031 5.87165 6.18664 6.24193 6.33502 6.80474 7.34514 8.87745 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.003402 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.361855 B = 8228.327590 C = 9069.906969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.123 4.123 3 C 0.153 3.847 4 H 0.082 0.918 5 C -0.085 4.085 6 C -0.078 4.078 7 C -0.125 4.125 8 C -0.135 4.135 9 C -0.139 4.139 10 C -0.130 4.130 11 C -0.125 4.125 12 N -1.098 6.098 13 S 2.620 3.380 14 O -1.001 7.001 15 O -0.963 6.963 16 C -0.617 4.617 17 C -0.103 4.103 18 C 0.033 3.967 19 C -0.553 4.553 20 H 0.058 0.942 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.962 3.038 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.276 1.276 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.425 0.575 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.003 0.997 45 H 0.002 0.998 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.416 -9.385 1.910 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C 0.046 3.954 4 H 0.100 0.900 5 C -0.124 4.124 6 C -0.079 4.079 7 C -0.143 4.143 8 C -0.154 4.154 9 C -0.157 4.157 10 C -0.148 4.148 11 C -0.143 4.143 12 N -0.860 5.860 13 S 2.714 3.286 14 O -0.991 6.991 15 O -0.953 6.953 16 C -0.747 4.747 17 C -0.142 4.142 18 C -0.005 4.005 19 C -0.591 4.591 20 H 0.076 0.924 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.786 3.214 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.201 1.201 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.262 0.738 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 22.558 -8.548 1.967 24.204 hybrid contribution -1.413 0.349 0.018 1.456 sum 21.145 -8.200 1.985 22.766 Atomic orbital electron populations 1.22056 0.96726 1.02596 1.01713 1.21883 0.95185 0.94424 1.04684 1.21035 0.94566 0.94602 0.85152 0.89983 1.21065 0.93977 0.92122 1.05259 1.19976 0.97982 0.97023 0.92879 1.21156 0.99753 0.94752 0.98645 1.21320 1.00089 0.96056 0.97887 1.21292 1.01143 1.00215 0.93098 1.21347 0.99423 0.95135 0.98876 1.21261 0.99662 0.95648 0.97691 1.55377 1.71249 1.44299 1.15057 1.04521 0.76133 0.74210 0.73752 1.93521 1.87285 1.82616 1.35659 1.93618 1.66723 1.66097 1.68837 1.30727 1.20122 1.08634 1.15207 1.21264 0.96823 0.94703 1.01405 1.18938 0.90996 0.95709 0.94830 1.21754 1.00262 0.97894 1.39164 0.92394 1.25909 0.99719 0.99070 0.94680 1.70069 1.19893 1.26439 1.40429 0.85448 0.78497 0.79328 0.78111 1.18910 1.20090 1.20128 0.93130 0.91595 0.93120 0.88700 0.89489 0.87574 0.88751 0.85926 0.85988 0.85618 0.85237 0.84685 0.73808 0.84110 0.84079 0.92066 0.91886 0.97839 0.97959 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.17 71.98 0.66 -2.11 16 2 C -0.12 -1.33 5.62 30.60 0.17 -1.16 16 3 C 0.15 2.28 2.15 44.99 0.10 2.38 16 4 H 0.08 1.40 7.70 -2.38 -0.02 1.38 16 5 C -0.09 -1.11 5.03 29.85 0.15 -0.96 16 6 C -0.08 -1.62 3.93 -19.86 -0.08 -1.69 16 7 C -0.12 -2.89 8.36 22.27 0.19 -2.70 16 8 C -0.14 -3.37 10.05 22.27 0.22 -3.14 16 9 C -0.14 -3.41 10.05 22.27 0.22 -3.18 16 10 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 11 C -0.12 -2.70 9.70 22.27 0.22 -2.48 16 12 N -1.10 -20.22 3.96 -169.38 -0.67 -20.89 16 13 S 2.62 75.20 5.31 -56.49 -0.30 74.90 16 14 O -1.00 -35.54 18.08 -127.65 -2.31 -37.85 16 15 O -0.96 -32.06 15.67 -127.65 -2.00 -34.06 16 16 C -0.62 -19.09 4.94 71.98 0.36 -18.73 16 17 C -0.10 -4.30 5.16 30.60 0.16 -4.14 16 18 C 0.03 1.75 4.97 29.85 0.15 1.90 16 19 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 20 H 0.06 3.25 7.74 -2.92 -0.02 3.22 16 21 C 0.00 0.26 5.46 84.66 0.46 0.72 16 22 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 23 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H 0.05 0.91 7.88 -2.39 -0.02 0.89 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 0.88 5.53 -2.39 -0.01 0.87 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.92 8.09 -2.39 -0.02 0.91 16 33 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 34 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 38 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 39 H 0.43 5.95 8.92 -96.75 -0.86 5.09 16 40 H 0.14 3.86 7.78 -2.39 -0.02 3.85 16 41 H 0.14 3.93 6.71 -2.39 -0.02 3.92 16 42 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.06 2.59 8.14 -2.38 -0.02 2.58 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 46 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -76.45 384.94 0.55 -75.90 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.09 Total: 20.68 kcal Atomic # 6 Polarization: -73.17 SS G_CDS: 3.43 Total: -69.73 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -0.39 Total: -76.34 kcal Atomic # 8 Polarization: -67.60 SS G_CDS: -4.31 Total: -71.91 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 75.20 SS G_CDS: -0.30 Total: 74.90 kcal Total: -76.45 0.55 -75.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109342738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.545 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds