Wall clock time and date at job start Tue Mar 31 2020 16:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47137 * 2 1 4 4 N 1.46507 * 109.46797 * 120.00063 * 2 1 3 5 5 C 1.34781 * 119.99539 * 274.99334 * 4 2 1 6 6 O 1.21282 * 120.00102 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99728 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.46930 * 180.02562 * 7 5 4 9 9 C 1.38297 * 119.93202 * 89.99982 * 8 7 5 10 10 C 1.38101 * 120.07230 * 180.02562 * 9 8 7 11 11 C 1.38886 * 119.92536 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47375 * 119.99795 * 17 15 13 20 20 H 1.48506 * 109.47301 * 239.99793 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38110 * 119.92772 * 359.48927 * 21 11 10 23 23 C 1.50698 * 109.46731 * 239.99552 * 2 1 3 24 24 C 1.38235 * 120.00402 * 279.72532 * 23 2 1 25 25 C 1.38231 * 120.00317 * 179.81310 * 24 23 2 26 26 C 1.38234 * 120.00119 * 0.40147 * 25 24 23 27 27 C 1.38241 * 119.99837 * 359.85292 * 26 25 24 28 28 C 1.38234 * 119.99699 * 359.95797 * 27 26 25 29 29 H 1.08997 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46783 * 300.00381 * 1 2 3 31 31 H 1.08999 * 109.46820 * 60.00313 * 1 2 3 32 32 H 0.96995 * 120.00045 * 95.00532 * 4 2 1 33 33 H 1.09003 * 109.46768 * 60.00063 * 7 5 4 34 34 H 1.09004 * 109.46918 * 300.00219 * 7 5 4 35 35 H 1.07999 * 119.96698 * 0.02562 * 9 8 7 36 36 H 1.07992 * 120.03608 * 179.97438 * 10 9 8 37 37 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 39 39 H 1.07996 * 119.96227 * 180.23396 * 22 21 11 40 40 H 1.08010 * 119.99518 * 359.97438 * 24 23 2 41 41 H 1.07999 * 120.00181 * 180.23321 * 25 24 23 42 42 H 1.07996 * 120.00596 * 179.83283 * 26 25 24 43 43 H 1.07991 * 120.00159 * 179.97438 * 27 26 25 44 44 H 1.08007 * 119.99808 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8583 1.1585 2.4117 7 6 2.6499 -0.7285 3.5876 8 6 2.7000 0.2398 4.7413 9 6 1.5974 0.3929 5.5620 10 6 1.6400 1.2798 6.6197 11 6 2.7918 2.0179 6.8591 12 8 2.8369 2.8901 7.8984 13 6 1.7741 2.9096 8.7277 14 1 0.9039 2.3102 8.5046 15 6 1.7982 3.6993 9.8673 16 7 2.8584 4.4291 10.1394 17 14 0.3260 3.7257 11.0166 18 1 -0.7296 2.8239 10.4897 19 1 0.7428 3.2655 12.3656 20 1 -0.2059 5.1092 11.1081 21 6 3.8955 1.8657 6.0301 22 6 3.8483 0.9737 4.9768 23 6 2.0323 -0.7105 -1.2304 24 6 2.0720 -2.0919 -1.2632 25 6 2.5291 -2.7437 -2.3932 26 6 2.9542 -2.0140 -3.4876 27 6 2.9195 -0.6325 -3.4530 28 6 2.4587 0.0192 -2.3243 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1527 33 1 3.6492 -1.1203 3.3979 34 1 1.9776 -1.5507 3.8326 35 1 0.7022 -0.1816 5.3755 36 1 0.7785 1.3992 7.2599 37 1 2.8752 4.9818 10.9364 38 1 4.7911 2.4416 6.2111 39 1 4.7076 0.8521 4.3340 40 1 1.7434 -2.6620 -0.4066 41 1 2.5565 -3.8230 -2.4202 42 1 3.3139 -2.5231 -4.3695 43 1 3.2520 -0.0624 -4.3077 44 1 2.4320 1.0986 -2.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110153879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:08 Heat of formation + Delta-G solvation = -18.526826 kcal Electronic energy + Delta-G solvation = -25567.547755 eV Core-core repulsion = 21836.221468 eV Total energy + Delta-G solvation = -3731.326287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.33284 -39.33904 -38.66150 -36.55787 -35.51661 -32.53361 -32.11104 -31.29932 -30.92570 -30.09056 -29.38174 -26.60871 -25.12483 -24.06819 -23.09703 -21.91540 -21.53672 -20.53823 -20.00567 -17.93162 -17.77022 -16.90090 -16.71775 -16.18271 -15.45474 -15.30853 -14.89302 -14.52338 -14.41311 -14.22105 -14.00222 -13.74529 -13.68019 -13.54212 -13.41127 -13.23100 -12.78545 -12.63817 -12.45793 -12.33912 -11.94985 -11.75546 -11.47249 -11.41408 -11.23499 -11.11428 -10.80297 -10.70418 -10.55499 -10.38215 -9.70436 -9.31410 -9.27167 -9.25322 -9.03957 -8.77875 -8.08914 -7.10501 -6.40282 -3.98612 0.93629 1.01394 2.30767 2.32207 2.80637 3.12633 3.16699 3.20182 3.22461 3.45772 4.00833 4.25324 4.48820 4.59678 4.61566 4.74059 4.96992 5.02320 5.06633 5.13357 5.16405 5.20341 5.29600 5.34766 5.37939 5.47042 5.59833 5.60633 5.70374 5.75128 5.78980 5.91021 5.97235 6.07231 6.13351 6.15352 6.27612 6.45346 6.47929 6.59917 6.76389 6.97527 7.11257 7.29890 7.43013 7.47413 7.51399 7.90113 8.05368 8.35545 9.05611 9.76982 10.78038 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.001981 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.275393 B =14133.522732 C =14330.837517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.182 3.818 3 H 0.096 0.904 4 N -0.736 5.736 5 C 0.511 3.489 6 O -0.519 6.519 7 C -0.080 4.080 8 C -0.169 4.169 9 C -0.057 4.057 10 C -0.232 4.232 11 C 0.157 3.843 12 O -0.179 6.179 13 C -0.390 4.390 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.192 4.192 22 C -0.059 4.059 23 C -0.087 4.087 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.109 4.109 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.269 0.731 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -15.588 -24.527 29.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.114 0.886 4 N -0.390 5.390 5 C 0.297 3.703 6 O -0.392 6.392 7 C -0.120 4.120 8 C -0.170 4.170 9 C -0.075 4.075 10 C -0.252 4.252 11 C 0.103 3.897 12 O -0.082 6.082 13 C -0.466 4.466 14 H 0.110 0.890 15 C -0.166 4.166 16 N -0.499 5.499 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.211 4.211 22 C -0.078 4.078 23 C -0.088 4.088 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.135 4.135 28 C -0.127 4.127 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.556 -14.366 -24.196 28.182 hybrid contribution -0.694 -0.483 0.418 0.943 sum -2.250 -14.849 -23.778 28.124 Atomic orbital electron populations 1.22159 0.94254 1.02284 1.02884 1.19742 0.94178 0.96853 0.81514 0.88642 1.46263 1.69283 1.13942 1.09546 1.21074 0.77295 0.87709 0.84185 1.90743 1.48038 1.15906 1.84552 1.20411 1.02461 0.97937 0.91173 1.18625 0.95928 1.03713 0.98773 1.20501 0.96191 0.96824 0.93978 1.21103 0.99550 1.02517 1.01990 1.19388 0.92993 0.88530 0.88795 1.83976 1.42057 1.49598 1.32619 1.21377 0.94167 1.28416 1.02658 0.89040 1.25290 0.98568 0.95821 0.96946 1.70050 1.27951 1.25739 1.26138 0.85647 0.79791 0.78479 0.79499 1.19121 1.20181 1.20188 1.20153 0.98112 1.04184 0.98633 1.20400 0.96597 0.94949 0.95841 1.20000 0.99204 0.93969 0.95585 1.20936 1.00201 0.93769 0.98405 1.21141 0.98954 0.99960 0.93441 1.21190 1.00012 0.94259 0.98600 1.21167 0.99522 0.94676 0.98088 1.21062 0.98446 1.00135 0.93065 0.92407 0.91338 0.91666 0.76869 0.88999 0.89035 0.87860 0.85608 0.92136 0.86569 0.87412 0.86083 0.85934 0.86078 0.85887 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.46 37.16 0.35 -1.13 16 2 C 0.18 1.79 2.78 -69.08 -0.19 1.60 16 3 H 0.10 1.13 7.44 -51.93 -0.39 0.74 16 4 N -0.74 -7.31 5.03 -54.92 -0.28 -7.59 16 5 C 0.51 7.02 7.79 -10.98 -0.09 6.94 16 6 O -0.52 -9.68 15.70 5.56 0.09 -9.59 16 7 C -0.08 -1.01 5.83 -29.03 -0.17 -1.18 16 8 C -0.17 -2.99 4.38 -104.58 -0.46 -3.45 16 9 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 10 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 11 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 12 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 13 C -0.39 -11.19 9.49 30.89 0.29 -10.90 16 14 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 15 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 16 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 17 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C -0.19 -4.27 9.99 -39.39 -0.39 -4.66 16 22 C -0.06 -1.12 9.69 -39.60 -0.38 -1.51 16 23 C -0.09 -0.73 4.96 -104.62 -0.52 -1.25 16 24 C -0.11 -0.82 9.06 -39.59 -0.36 -1.18 16 25 C -0.12 -0.77 10.05 -39.59 -0.40 -1.16 16 26 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 27 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 28 C -0.11 -0.87 9.67 -39.58 -0.38 -1.26 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.40 2.81 6.85 -40.82 -0.28 2.53 16 33 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 0.67 6.90 -52.48 -0.36 0.30 16 41 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.89 8.04 -52.48 -0.42 0.47 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -34.84 376.58 -9.17 -44.01 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.80 Total: 5.92 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -4.59 Total: -24.03 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.48 Total: -32.67 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.09 Total: -14.87 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.84 -9.17 -44.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110153879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.484 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds