Wall clock time and date at job start Tue Mar 31 2020 16:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47137 * 2 1 4 4 N 1.46507 * 109.46797 * 120.00063 * 2 1 3 5 5 C 1.34781 * 119.99539 * 274.99334 * 4 2 1 6 6 O 1.21282 * 120.00102 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99728 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.46930 * 180.02562 * 7 5 4 9 9 C 1.38297 * 119.93202 * 89.99982 * 8 7 5 10 10 C 1.38101 * 120.07230 * 180.02562 * 9 8 7 11 11 C 1.38886 * 119.92536 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47375 * 119.99795 * 17 15 13 20 20 H 1.48506 * 109.47301 * 239.99793 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38110 * 119.92772 * 359.48927 * 21 11 10 23 23 C 1.50698 * 109.46731 * 239.99552 * 2 1 3 24 24 C 1.38235 * 120.00402 * 279.72532 * 23 2 1 25 25 C 1.38231 * 120.00317 * 179.81310 * 24 23 2 26 26 C 1.38234 * 120.00119 * 0.40147 * 25 24 23 27 27 C 1.38241 * 119.99837 * 359.85292 * 26 25 24 28 28 C 1.38234 * 119.99699 * 359.95797 * 27 26 25 29 29 H 1.08997 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46783 * 300.00381 * 1 2 3 31 31 H 1.08999 * 109.46820 * 60.00313 * 1 2 3 32 32 H 0.96995 * 120.00045 * 95.00532 * 4 2 1 33 33 H 1.09003 * 109.46768 * 60.00063 * 7 5 4 34 34 H 1.09004 * 109.46918 * 300.00219 * 7 5 4 35 35 H 1.07999 * 119.96698 * 0.02562 * 9 8 7 36 36 H 1.07992 * 120.03608 * 179.97438 * 10 9 8 37 37 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 39 39 H 1.07996 * 119.96227 * 180.23396 * 22 21 11 40 40 H 1.08010 * 119.99518 * 359.97438 * 24 23 2 41 41 H 1.07999 * 120.00181 * 180.23321 * 25 24 23 42 42 H 1.07996 * 120.00596 * 179.83283 * 26 25 24 43 43 H 1.07991 * 120.00159 * 179.97438 * 27 26 25 44 44 H 1.08007 * 119.99808 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8583 1.1585 2.4117 7 6 2.6499 -0.7285 3.5876 8 6 2.7000 0.2398 4.7413 9 6 1.5974 0.3929 5.5620 10 6 1.6400 1.2798 6.6197 11 6 2.7918 2.0179 6.8591 12 8 2.8369 2.8901 7.8984 13 6 1.7741 2.9096 8.7277 14 1 0.9039 2.3102 8.5046 15 6 1.7982 3.6993 9.8673 16 7 2.8584 4.4291 10.1394 17 14 0.3260 3.7257 11.0166 18 1 -0.7296 2.8239 10.4897 19 1 0.7428 3.2655 12.3656 20 1 -0.2059 5.1092 11.1081 21 6 3.8955 1.8657 6.0301 22 6 3.8483 0.9737 4.9768 23 6 2.0323 -0.7105 -1.2304 24 6 2.0720 -2.0919 -1.2632 25 6 2.5291 -2.7437 -2.3932 26 6 2.9542 -2.0140 -3.4876 27 6 2.9195 -0.6325 -3.4530 28 6 2.4587 0.0192 -2.3243 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1527 33 1 3.6492 -1.1203 3.3979 34 1 1.9776 -1.5507 3.8326 35 1 0.7022 -0.1816 5.3755 36 1 0.7785 1.3992 7.2599 37 1 2.8752 4.9818 10.9364 38 1 4.7911 2.4416 6.2111 39 1 4.7076 0.8521 4.3340 40 1 1.7434 -2.6620 -0.4066 41 1 2.5565 -3.8230 -2.4202 42 1 3.3139 -2.5231 -4.3695 43 1 3.2520 -0.0624 -4.3077 44 1 2.4320 1.0986 -2.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110153879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:07 Heat of formation + Delta-G solvation = -39.987324 kcal Electronic energy + Delta-G solvation = -25568.478352 eV Core-core repulsion = 21836.221468 eV Total energy + Delta-G solvation = -3732.256884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.27859 -40.66335 -39.86496 -38.22875 -36.45392 -34.39884 -33.32548 -32.21147 -31.77367 -31.71180 -30.10777 -28.15840 -26.98936 -24.82894 -23.67215 -23.62867 -22.67254 -21.58768 -21.09459 -19.84188 -18.89564 -18.45448 -17.61294 -16.95132 -16.63011 -16.37215 -16.06191 -15.93441 -15.83859 -15.51034 -15.34606 -15.02851 -14.79012 -14.60608 -14.38786 -14.23870 -14.13205 -14.01647 -13.59560 -13.36220 -13.09705 -12.98096 -12.78656 -12.52737 -12.47275 -12.26901 -12.25140 -12.09358 -11.93992 -11.74382 -11.17254 -10.92215 -10.74326 -10.14345 -9.81306 -9.75562 -9.65564 -8.89207 -8.47354 -6.15433 0.39254 0.50619 0.62198 0.68544 1.33907 1.42594 1.52836 1.75418 2.17600 2.25808 2.84538 2.90890 3.18930 3.52309 3.59496 3.87131 3.96731 4.06416 4.14184 4.16289 4.22062 4.30357 4.31929 4.35367 4.50831 4.60219 4.62571 4.65051 4.72318 4.76018 4.81559 4.94445 5.05873 5.10069 5.15229 5.15827 5.21905 5.31384 5.44209 5.57090 5.57930 5.64527 5.71774 5.72437 5.78957 6.03280 6.10571 6.23956 6.63624 6.97206 7.37562 7.78988 8.76412 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.001981 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.275393 B =14133.522732 C =14330.837517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.184 3.816 3 H 0.069 0.931 4 N -0.714 5.714 5 C 0.512 3.488 6 O -0.578 6.578 7 C -0.078 4.078 8 C -0.144 4.144 9 C -0.060 4.060 10 C -0.244 4.244 11 C 0.112 3.888 12 O -0.234 6.234 13 C -0.413 4.413 14 H 0.100 0.900 15 C -0.026 4.026 16 N -0.922 5.922 17 Si 1.021 2.979 18 H -0.252 1.252 19 H -0.266 1.266 20 H -0.269 1.269 21 C -0.207 4.207 22 C -0.058 4.058 23 C -0.098 4.098 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.126 4.126 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.415 0.585 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.273 0.727 38 H 0.111 0.889 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -19.537 -27.118 33.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.080 3.920 3 H 0.087 0.913 4 N -0.369 5.369 5 C 0.300 3.700 6 O -0.456 6.456 7 C -0.117 4.117 8 C -0.145 4.145 9 C -0.078 4.078 10 C -0.263 4.263 11 C 0.061 3.939 12 O -0.141 6.141 13 C -0.489 4.489 14 H 0.118 0.882 15 C -0.223 4.223 16 N -0.560 5.560 17 Si 0.840 3.160 18 H -0.175 1.175 19 H -0.191 1.191 20 H -0.194 1.194 21 C -0.226 4.226 22 C -0.076 4.076 23 C -0.099 4.099 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.143 4.143 28 C -0.144 4.144 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.253 0.747 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.390 -18.405 -26.866 32.653 hybrid contribution -0.344 0.515 0.815 1.024 sum -2.734 -17.890 -26.050 31.720 Atomic orbital electron populations 1.22098 0.93927 1.03012 1.01988 1.19650 0.94389 0.95845 0.82154 0.91286 1.46047 1.67662 1.14644 1.08513 1.21191 0.76604 0.86938 0.85260 1.90752 1.50948 1.18432 1.85502 1.20540 1.05804 0.97159 0.88214 1.19252 0.94198 1.02294 0.98788 1.20934 0.98175 0.95955 0.92720 1.21227 0.98501 1.03322 1.03274 1.19941 0.95110 0.89737 0.89063 1.83937 1.43089 1.52461 1.34638 1.21866 0.94648 1.29069 1.03347 0.88227 1.26633 1.02120 0.95029 0.98478 1.70196 1.30823 1.27616 1.27390 0.84503 0.75661 0.78972 0.76871 1.17509 1.19055 1.19396 1.20438 0.97395 1.05285 0.99512 1.20875 0.98559 0.93455 0.94729 1.19870 1.00493 0.94641 0.94886 1.21155 0.99900 0.93141 0.99414 1.21467 0.98138 1.01224 0.93015 1.21529 0.99320 0.94131 0.99461 1.21403 0.99356 0.95351 0.98191 1.21204 0.99167 1.00353 0.93723 0.90754 0.93847 0.90988 0.74699 0.85225 0.85191 0.84337 0.86520 0.91844 0.87073 0.83684 0.84234 0.83680 0.84086 0.84504 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.46 71.98 0.68 -1.97 16 2 C 0.18 3.34 2.78 44.25 0.12 3.47 16 3 H 0.07 1.64 7.44 -2.39 -0.02 1.62 16 4 N -0.71 -11.82 5.03 -446.06 -2.24 -14.07 16 5 C 0.51 12.47 7.79 87.66 0.68 13.15 16 6 O -0.58 -20.92 15.70 -3.04 -0.05 -20.97 16 7 C -0.08 -1.56 5.83 29.10 0.17 -1.39 16 8 C -0.14 -4.67 4.38 -19.84 -0.09 -4.75 16 9 C -0.06 -2.20 9.69 22.25 0.22 -1.98 16 10 C -0.24 -11.39 9.17 22.39 0.21 -11.18 16 11 C 0.11 5.94 6.65 22.58 0.15 6.09 16 12 O -0.23 -14.86 9.76 -22.72 -0.22 -15.08 16 13 C -0.41 -25.14 9.49 67.92 0.64 -24.49 16 14 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 15 C -0.03 -1.50 5.49 84.84 0.47 -1.04 16 16 N -0.92 -58.36 13.67 21.62 0.30 -58.07 16 17 Si 1.02 44.36 29.55 68.60 2.03 46.38 16 18 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 C -0.21 -9.51 9.99 22.39 0.22 -9.28 16 22 C -0.06 -2.10 9.69 22.25 0.22 -1.88 16 23 C -0.10 -1.44 4.96 -19.87 -0.10 -1.54 16 24 C -0.12 -1.27 9.06 22.27 0.20 -1.07 16 25 C -0.12 -1.13 10.05 22.27 0.22 -0.91 16 26 C -0.13 -1.26 10.05 22.27 0.22 -1.04 16 27 C -0.13 -1.50 10.05 22.27 0.22 -1.27 16 28 C -0.13 -1.86 9.67 22.27 0.22 -1.65 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.41 3.89 6.85 -92.71 -0.64 3.25 16 33 H 0.13 1.76 8.09 -2.39 -0.02 1.75 16 34 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 36 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 37 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 39 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 40 H 0.14 0.89 6.90 -2.91 -0.02 0.87 16 41 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 42 H 0.14 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.14 1.15 8.06 -2.92 -0.02 1.12 16 44 H 0.12 1.74 8.04 -2.91 -0.02 1.71 16 Total: -1.00 -83.85 376.58 4.88 -78.98 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.38 Total: 25.57 kcal Atomic # 6 Polarization: -47.42 SS G_CDS: 4.68 Total: -42.74 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -1.95 Total: -72.14 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.27 Total: -36.05 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -83.85 4.88 -78.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110153879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.988 kcal (2) G-P(sol) polarization free energy of solvation -83.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds