Wall clock time and date at job start Tue Mar 31 2020 16:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47233 * 2 1 4 4 N 1.46504 * 109.47162 * 240.00053 * 2 1 3 5 5 S 1.65603 * 119.99976 * 94.99940 * 4 2 1 6 6 O 1.42095 * 104.27561 * 308.92941 * 5 4 2 7 7 O 1.42102 * 104.27441 * 181.07158 * 5 4 2 8 8 C 1.81399 * 104.44937 * 64.99885 * 5 4 2 9 9 C 1.52998 * 109.47013 * 179.97438 * 8 5 4 10 10 C 1.50702 * 109.47405 * 180.02562 * 9 8 5 11 11 H 1.08003 * 119.99492 * 0.02562 * 10 9 8 12 12 C 1.37868 * 120.00127 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00349 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99842 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47161 * 90.00209 * 14 12 10 16 16 H 1.48507 * 109.47152 * 210.00050 * 14 12 10 17 17 H 1.48495 * 109.47533 * 330.00247 * 14 12 10 18 18 C 1.53002 * 109.47257 * 119.99837 * 2 1 3 19 19 C 1.52993 * 109.46919 * 55.27166 * 18 2 1 20 20 C 1.53005 * 109.46854 * 175.26817 * 18 2 1 21 21 C 1.50697 * 109.47036 * 295.26992 * 18 2 1 22 22 C 1.38235 * 120.00486 * 351.56856 * 21 18 2 23 23 C 1.38224 * 120.00363 * 179.76762 * 22 21 18 24 24 C 1.38239 * 120.00057 * 0.50451 * 23 22 21 25 25 C 1.38239 * 119.99807 * 359.75383 * 24 23 22 26 26 C 1.38234 * 119.99756 * 171.84781 * 21 18 2 27 27 H 1.08999 * 109.46871 * 52.62677 * 1 2 3 28 28 H 1.08996 * 109.46841 * 172.62892 * 1 2 3 29 29 H 1.08999 * 109.46862 * 292.62839 * 1 2 3 30 30 H 0.96996 * 119.99829 * 275.00163 * 4 2 1 31 31 H 1.08996 * 109.47273 * 299.99986 * 8 5 4 32 32 H 1.09007 * 109.47042 * 60.00236 * 8 5 4 33 33 H 1.08996 * 109.47364 * 300.00267 * 9 8 5 34 34 H 1.09007 * 109.46749 * 60.00392 * 9 8 5 35 35 H 0.96995 * 119.99793 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.47640 * 59.99810 * 19 18 2 37 37 H 1.09000 * 109.46982 * 180.02562 * 19 18 2 38 38 H 1.09001 * 109.47195 * 300.00108 * 19 18 2 39 39 H 1.08997 * 109.46937 * 60.00700 * 20 18 2 40 40 H 1.09000 * 109.46794 * 180.02562 * 20 18 2 41 41 H 1.08992 * 109.47440 * 300.00077 * 20 18 2 42 42 H 1.08007 * 119.99422 * 0.02562 * 22 21 18 43 43 H 1.08003 * 120.00593 * 180.23593 * 23 22 21 44 44 H 1.07998 * 120.00270 * 179.72466 * 24 23 22 45 45 H 1.07998 * 120.00234 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.00309 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4122 0.1772 -2.5505 6 8 1.2751 0.9966 -2.7846 7 8 2.8123 -0.8076 -3.4936 8 6 3.8313 1.1873 -2.0441 9 6 4.2941 2.0444 -3.2239 10 6 5.4734 2.8832 -2.8034 11 1 5.8549 2.8116 -1.7956 12 6 6.0653 3.7417 -3.7053 13 7 5.6004 3.8292 -4.9325 14 14 7.5276 4.7808 -3.1842 15 1 8.7842 4.0348 -3.4483 16 1 7.5336 6.0494 -3.9563 17 1 7.4276 5.0844 -1.7341 18 6 2.0400 -0.7212 1.2493 19 6 1.4353 -2.1252 1.3101 20 6 3.5654 -0.8250 1.1911 21 6 1.6357 0.0536 2.4769 22 6 1.0688 1.3077 2.3472 23 6 0.6935 2.0164 3.4730 24 6 0.8946 1.4755 4.7292 25 6 1.4664 0.2236 4.8592 26 6 1.8369 -0.4873 3.7330 27 1 -0.3633 0.6238 -0.8167 28 1 -0.3633 -1.0192 -0.1318 29 1 -0.3633 0.3954 0.9486 30 1 2.1110 -1.6561 -1.1949 31 1 3.5399 1.8343 -1.2167 32 1 4.6459 0.5362 -1.7268 33 1 4.5855 1.3972 -4.0510 34 1 3.4796 2.6955 -3.5415 35 1 6.0166 4.4335 -5.5668 36 1 1.7277 -2.6857 0.4222 37 1 1.7983 -2.6389 2.2004 38 1 0.3486 -2.0513 1.3515 39 1 3.9963 0.1752 1.1478 40 1 3.9288 -1.3392 2.0809 41 1 3.8579 -1.3854 0.3032 42 1 0.9153 1.7320 1.3659 43 1 0.2471 2.9946 3.3716 44 1 0.6054 2.0311 5.6090 45 1 1.6239 -0.1989 5.8405 46 1 2.2835 -1.4653 3.8346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111339147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:48 Heat of formation + Delta-G solvation = -64.064529 kcal Electronic energy + Delta-G solvation = -26452.091807 eV Core-core repulsion = 22854.234808 eV Total energy + Delta-G solvation = -3597.856999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.46232 -37.63666 -36.53185 -35.41652 -33.89517 -33.44785 -31.41457 -31.16782 -29.85885 -29.34002 -27.36374 -25.59319 -24.07579 -22.65268 -22.20587 -21.67803 -19.36206 -19.02889 -17.74452 -16.91194 -16.54883 -16.10835 -15.40341 -15.21278 -15.09533 -14.63957 -14.55734 -14.38022 -14.12249 -13.86507 -13.57498 -13.39814 -13.26302 -12.52686 -12.38302 -12.25892 -12.11355 -12.06800 -11.86058 -11.75388 -11.57619 -11.55279 -11.48846 -11.36823 -11.09108 -11.05121 -10.94164 -10.76676 -10.49823 -10.39525 -10.29317 -9.80105 -9.49221 -9.03560 -9.02737 -8.80285 -8.50171 -6.12315 -4.17790 0.80669 1.21093 1.25632 3.14024 3.26013 3.32380 3.35017 3.63239 4.21475 4.34444 4.38270 4.44897 4.69584 4.77027 4.84386 4.85958 4.96659 4.99456 5.13301 5.23018 5.28980 5.33288 5.38551 5.43682 5.52543 5.64415 5.70162 5.71484 5.72096 5.76118 5.84462 5.89588 5.91551 5.96683 6.14335 6.19776 6.33410 6.36473 6.39236 6.48222 6.49686 6.85303 7.12744 7.30228 7.36408 7.80720 8.17699 8.85613 9.47034 10.98745 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003817 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.437348 B = 7333.121885 C = 8626.476509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.160 3.840 3 H 0.087 0.913 4 N -1.120 6.120 5 S 2.590 3.410 6 O -0.964 6.964 7 O -0.969 6.969 8 C -0.591 4.591 9 C 0.029 3.971 10 C -0.519 4.519 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.030 4.030 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.063 4.063 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.114 4.114 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.411 0.589 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 -9.977 19.081 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.052 3.948 3 H 0.105 0.895 4 N -0.877 5.877 5 S 2.688 3.312 6 O -0.954 6.954 7 O -0.959 6.959 8 C -0.724 4.724 9 C -0.010 4.010 10 C -0.559 4.559 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.032 4.032 19 C -0.198 4.198 20 C -0.201 4.201 21 C -0.064 4.064 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.132 4.132 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.245 0.755 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.113 -9.772 18.057 22.887 hybrid contribution 1.334 0.414 0.794 1.607 sum -8.779 -9.358 18.852 22.804 Atomic orbital electron populations 1.22586 0.94910 1.03243 1.03275 1.20756 0.94668 0.95539 0.83821 0.89523 1.55920 1.82616 1.19190 1.29959 1.05620 0.77250 0.75136 0.73226 1.93541 1.47941 1.70366 1.83587 1.93552 1.84709 1.58589 1.59060 1.30468 1.16941 1.13418 1.11555 1.18953 0.98178 0.94226 0.89686 1.20994 1.13914 1.22985 0.97976 0.92063 1.25059 0.97502 0.96988 0.94899 1.69955 1.41076 1.37622 1.04199 0.86486 0.82528 0.79709 0.78658 1.20470 1.21004 1.19767 1.19767 0.96543 0.95361 0.91516 1.21952 1.01342 0.94571 1.01971 1.21936 0.92909 1.02924 1.02323 1.19698 0.98092 0.94560 0.94032 1.21377 0.98830 0.94461 0.99429 1.21181 0.99891 0.99851 0.92529 1.21140 0.99985 0.95957 0.97422 1.21103 0.99277 0.95123 0.98369 1.20943 1.00463 0.99977 0.91849 0.90730 0.91843 0.90986 0.75473 0.86449 0.86069 0.94893 0.94850 0.92540 0.92042 0.92266 0.91785 0.91823 0.92287 0.91506 0.85026 0.86000 0.86384 0.86347 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.08 37.16 0.30 -1.69 16 2 C 0.16 1.81 1.45 -67.93 -0.10 1.71 16 3 H 0.09 1.01 5.81 -51.93 -0.30 0.71 16 4 N -1.12 -14.03 4.41 -4.89 -0.02 -14.05 16 5 S 2.59 45.56 5.38 -107.50 -0.58 44.98 16 6 O -0.96 -19.55 17.26 -57.54 -0.99 -20.55 16 7 O -0.97 -19.98 18.08 -57.54 -1.04 -21.02 16 8 C -0.59 -11.10 5.90 37.16 0.22 -10.88 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.59 16 10 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 11 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 14 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 18 C -0.03 -0.29 0.45 -155.66 -0.07 -0.36 16 19 C -0.14 -1.13 7.59 37.15 0.28 -0.85 16 20 C -0.14 -1.39 8.15 37.16 0.30 -1.09 16 21 C -0.06 -0.62 4.40 -104.63 -0.46 -1.08 16 22 C -0.12 -1.25 7.36 -39.59 -0.29 -1.55 16 23 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 24 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.11 -1.02 8.83 -39.58 -0.35 -1.37 16 27 H 0.07 0.95 7.58 -51.93 -0.39 0.56 16 28 H 0.06 0.63 6.80 -51.93 -0.35 0.28 16 29 H 0.07 0.70 5.41 -51.93 -0.28 0.42 16 30 H 0.41 4.31 7.15 -34.47 -0.25 4.06 16 31 H 0.12 1.97 7.44 -51.93 -0.39 1.58 16 32 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 33 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 0.46 6.72 -51.93 -0.35 0.11 16 37 H 0.06 0.41 6.98 -51.93 -0.36 0.05 16 38 H 0.06 0.51 6.52 -51.93 -0.34 0.18 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 41 H 0.07 0.63 7.40 -51.93 -0.38 0.24 16 42 H 0.13 1.32 5.09 -52.48 -0.27 1.05 16 43 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.89 7.10 -52.49 -0.37 0.52 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -34.44 371.87 -10.17 -44.61 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.95 Total: 3.99 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: -1.91 Total: -34.01 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.71 Total: -39.75 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -2.03 Total: -41.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -0.58 Total: 44.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.44 -10.17 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111339147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.452 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds