Wall clock time and date at job start Tue Mar 31 2020 16:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47233 * 2 1 4 4 N 1.46504 * 109.47162 * 240.00053 * 2 1 3 5 5 S 1.65603 * 119.99976 * 94.99940 * 4 2 1 6 6 O 1.42095 * 104.27561 * 308.92941 * 5 4 2 7 7 O 1.42102 * 104.27441 * 181.07158 * 5 4 2 8 8 C 1.81399 * 104.44937 * 64.99885 * 5 4 2 9 9 C 1.52998 * 109.47013 * 179.97438 * 8 5 4 10 10 C 1.50702 * 109.47405 * 180.02562 * 9 8 5 11 11 H 1.08003 * 119.99492 * 0.02562 * 10 9 8 12 12 C 1.37868 * 120.00127 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00349 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99842 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47161 * 90.00209 * 14 12 10 16 16 H 1.48507 * 109.47152 * 210.00050 * 14 12 10 17 17 H 1.48495 * 109.47533 * 330.00247 * 14 12 10 18 18 C 1.53002 * 109.47257 * 119.99837 * 2 1 3 19 19 C 1.52993 * 109.46919 * 55.27166 * 18 2 1 20 20 C 1.53005 * 109.46854 * 175.26817 * 18 2 1 21 21 C 1.50697 * 109.47036 * 295.26992 * 18 2 1 22 22 C 1.38235 * 120.00486 * 351.56856 * 21 18 2 23 23 C 1.38224 * 120.00363 * 179.76762 * 22 21 18 24 24 C 1.38239 * 120.00057 * 0.50451 * 23 22 21 25 25 C 1.38239 * 119.99807 * 359.75383 * 24 23 22 26 26 C 1.38234 * 119.99756 * 171.84781 * 21 18 2 27 27 H 1.08999 * 109.46871 * 52.62677 * 1 2 3 28 28 H 1.08996 * 109.46841 * 172.62892 * 1 2 3 29 29 H 1.08999 * 109.46862 * 292.62839 * 1 2 3 30 30 H 0.96996 * 119.99829 * 275.00163 * 4 2 1 31 31 H 1.08996 * 109.47273 * 299.99986 * 8 5 4 32 32 H 1.09007 * 109.47042 * 60.00236 * 8 5 4 33 33 H 1.08996 * 109.47364 * 300.00267 * 9 8 5 34 34 H 1.09007 * 109.46749 * 60.00392 * 9 8 5 35 35 H 0.96995 * 119.99793 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.47640 * 59.99810 * 19 18 2 37 37 H 1.09000 * 109.46982 * 180.02562 * 19 18 2 38 38 H 1.09001 * 109.47195 * 300.00108 * 19 18 2 39 39 H 1.08997 * 109.46937 * 60.00700 * 20 18 2 40 40 H 1.09000 * 109.46794 * 180.02562 * 20 18 2 41 41 H 1.08992 * 109.47440 * 300.00077 * 20 18 2 42 42 H 1.08007 * 119.99422 * 0.02562 * 22 21 18 43 43 H 1.08003 * 120.00593 * 180.23593 * 23 22 21 44 44 H 1.07998 * 120.00270 * 179.72466 * 24 23 22 45 45 H 1.07998 * 120.00234 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.00309 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4122 0.1772 -2.5505 6 8 1.2751 0.9966 -2.7846 7 8 2.8123 -0.8076 -3.4936 8 6 3.8313 1.1873 -2.0441 9 6 4.2941 2.0444 -3.2239 10 6 5.4734 2.8832 -2.8034 11 1 5.8549 2.8116 -1.7956 12 6 6.0653 3.7417 -3.7053 13 7 5.6004 3.8292 -4.9325 14 14 7.5276 4.7808 -3.1842 15 1 8.7842 4.0348 -3.4483 16 1 7.5336 6.0494 -3.9563 17 1 7.4276 5.0844 -1.7341 18 6 2.0400 -0.7212 1.2493 19 6 1.4353 -2.1252 1.3101 20 6 3.5654 -0.8250 1.1911 21 6 1.6357 0.0536 2.4769 22 6 1.0688 1.3077 2.3472 23 6 0.6935 2.0164 3.4730 24 6 0.8946 1.4755 4.7292 25 6 1.4664 0.2236 4.8592 26 6 1.8369 -0.4873 3.7330 27 1 -0.3633 0.6238 -0.8167 28 1 -0.3633 -1.0192 -0.1318 29 1 -0.3633 0.3954 0.9486 30 1 2.1110 -1.6561 -1.1949 31 1 3.5399 1.8343 -1.2167 32 1 4.6459 0.5362 -1.7268 33 1 4.5855 1.3972 -4.0510 34 1 3.4796 2.6955 -3.5415 35 1 6.0166 4.4335 -5.5668 36 1 1.7277 -2.6857 0.4222 37 1 1.7983 -2.6389 2.2004 38 1 0.3486 -2.0513 1.3515 39 1 3.9963 0.1752 1.1478 40 1 3.9288 -1.3392 2.0809 41 1 3.8579 -1.3854 0.3032 42 1 0.9153 1.7320 1.3659 43 1 0.2471 2.9946 3.3716 44 1 0.6054 2.0311 5.6090 45 1 1.6239 -0.1989 5.8405 46 1 2.2835 -1.4653 3.8346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111339147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:45 Heat of formation + Delta-G solvation = -86.465761 kcal Electronic energy + Delta-G solvation = -26453.063197 eV Core-core repulsion = 22854.234808 eV Total energy + Delta-G solvation = -3598.828389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.20245 -38.47128 -38.05903 -36.99430 -35.89585 -34.36671 -33.13073 -32.14222 -30.55982 -30.20491 -28.07657 -27.56154 -24.86067 -23.61300 -23.36059 -22.97057 -20.41610 -20.11331 -19.20346 -18.44537 -17.60460 -17.28726 -17.00797 -16.53402 -16.34153 -15.90856 -15.55460 -15.21755 -15.09324 -14.83351 -14.63403 -14.46493 -14.37464 -14.00243 -13.72443 -13.29121 -13.18381 -13.14582 -12.96021 -12.94229 -12.90683 -12.79061 -12.71816 -12.66206 -12.56980 -12.25046 -12.18299 -12.08423 -11.83710 -11.69398 -11.45356 -11.31357 -11.06567 -10.64425 -10.38459 -9.70552 -9.48939 -8.25785 -6.39561 -0.67216 0.53759 0.58476 1.40628 1.42235 1.53304 1.84248 2.37896 2.80105 2.96045 3.07767 3.27258 3.53442 3.72179 3.89999 3.98980 4.08995 4.17154 4.21375 4.25219 4.31047 4.40634 4.46798 4.58752 4.69015 4.75259 4.76916 4.87261 4.93375 4.99068 5.03550 5.07812 5.17174 5.24831 5.25632 5.27658 5.28268 5.35793 5.40267 5.53308 5.68693 5.69520 5.72422 5.79059 6.06510 6.16007 6.21136 6.73957 7.30604 8.86537 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003817 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.437348 B = 7333.121885 C = 8626.476509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.151 3.849 3 H 0.082 0.918 4 N -1.098 6.098 5 S 2.617 3.383 6 O -0.993 6.993 7 O -0.999 6.999 8 C -0.589 4.589 9 C 0.021 3.979 10 C -0.537 4.537 11 H 0.075 0.925 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.972 3.028 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.258 1.258 18 C -0.021 4.021 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.071 4.071 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.119 4.119 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.424 0.576 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.267 0.733 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.125 0.875 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 -10.886 22.051 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.045 3.955 3 H 0.100 0.900 4 N -0.860 5.860 5 S 2.713 3.287 6 O -0.983 6.983 7 O -0.990 6.990 8 C -0.721 4.721 9 C -0.017 4.017 10 C -0.576 4.576 11 H 0.093 0.907 12 C -0.201 4.201 13 N -0.574 5.574 14 Si 0.795 3.205 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.182 1.182 18 C -0.023 4.023 19 C -0.200 4.200 20 C -0.206 4.206 21 C -0.071 4.071 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.136 4.136 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.262 0.738 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.511 -10.693 21.037 25.443 hybrid contribution 1.076 0.668 -0.055 1.268 sum -8.435 -10.025 20.982 24.736 Atomic orbital electron populations 1.22559 0.94557 1.03555 1.03097 1.20988 0.95030 0.95601 0.83928 0.90040 1.55392 1.81914 1.19571 1.29113 1.04541 0.76215 0.74405 0.73496 1.93507 1.48812 1.71434 1.84509 1.93503 1.85016 1.59320 1.61117 1.30360 1.18584 1.13632 1.09519 1.18806 0.97169 0.94284 0.91475 1.21496 1.14389 1.23070 0.98622 0.90684 1.26091 1.00727 0.98483 0.94821 1.70102 1.42912 1.38747 1.05613 0.85344 0.78575 0.77660 0.78875 1.19584 1.20842 1.18212 1.19678 0.96477 0.95939 0.90204 1.21989 1.01361 0.93606 1.03022 1.21999 0.92905 1.02462 1.03237 1.19745 0.98452 0.94463 0.94489 1.21458 0.99959 0.95140 0.99504 1.21387 1.00127 1.00381 0.92823 1.21425 0.99660 0.96353 0.97717 1.21426 0.98511 0.94963 0.99332 1.21165 1.00270 1.00717 0.91492 0.92970 0.90703 0.89689 0.73780 0.84393 0.83857 0.97591 0.97533 0.92411 0.91519 0.90735 0.91725 0.93026 0.90769 0.91287 0.85718 0.85216 0.84620 0.84214 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.78 8.08 71.98 0.58 -3.19 16 2 C 0.15 3.25 1.45 44.99 0.07 3.32 16 3 H 0.08 1.85 5.81 -2.38 -0.01 1.84 16 4 N -1.10 -26.32 4.41 -169.37 -0.75 -27.07 16 5 S 2.62 92.72 5.38 -56.49 -0.30 92.42 16 6 O -0.99 -41.18 17.26 -127.65 -2.20 -43.39 16 7 O -1.00 -41.64 18.08 -127.65 -2.31 -43.94 16 8 C -0.59 -22.14 5.90 71.98 0.42 -21.72 16 9 C 0.02 1.13 4.98 29.85 0.15 1.27 16 10 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 11 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 12 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 13 N -0.93 -56.95 13.29 21.44 0.28 -56.67 16 14 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 18 C -0.02 -0.36 0.45 -52.93 -0.02 -0.38 16 19 C -0.14 -1.89 7.59 71.98 0.55 -1.34 16 20 C -0.15 -2.53 8.15 71.98 0.59 -1.95 16 21 C -0.07 -1.24 4.40 -19.87 -0.09 -1.33 16 22 C -0.14 -2.77 7.36 22.27 0.16 -2.60 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 25 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.12 -1.78 8.83 22.27 0.20 -1.59 16 27 H 0.05 1.34 7.58 -2.39 -0.02 1.32 16 28 H 0.07 1.38 6.80 -2.39 -0.02 1.37 16 29 H 0.08 1.57 5.41 -2.39 -0.01 1.56 16 30 H 0.42 8.14 7.15 -96.75 -0.69 7.45 16 31 H 0.14 4.56 7.44 -2.39 -0.02 4.54 16 32 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 33 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.07 0.81 6.72 -2.39 -0.02 0.79 16 37 H 0.07 0.78 6.98 -2.39 -0.02 0.76 16 38 H 0.06 0.86 6.52 -2.39 -0.02 0.85 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.04 7.93 -2.39 -0.02 1.02 16 41 H 0.07 1.13 7.40 -2.39 -0.02 1.11 16 42 H 0.13 2.49 5.09 -2.91 -0.01 2.48 16 43 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.14 1.54 7.10 -2.91 -0.02 1.52 16 Total: -1.00 -75.27 371.87 1.01 -74.27 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.29 Total: 23.14 kcal Atomic # 6 Polarization: -68.07 SS G_CDS: 3.97 Total: -64.11 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -0.46 Total: -83.73 kcal Atomic # 8 Polarization: -82.82 SS G_CDS: -4.51 Total: -87.33 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 92.72 SS G_CDS: -0.30 Total: 92.42 kcal Total: -75.27 1.01 -74.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111339147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.200 kcal (2) G-P(sol) polarization free energy of solvation -75.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds