Wall clock time and date at job start Tue Mar 31 2020 16:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47158 * 2 1 4 4 N 1.46496 * 109.47568 * 120.00267 * 2 1 3 5 5 S 1.65598 * 120.00069 * 268.71392 * 4 2 1 6 6 O 1.42097 * 104.27868 * 182.60084 * 5 4 2 7 7 O 1.42098 * 104.27729 * 310.46137 * 5 4 2 8 8 C 1.81405 * 104.44992 * 66.53288 * 5 4 2 9 9 C 1.52999 * 109.47211 * 180.02562 * 8 5 4 10 10 C 1.50699 * 109.47255 * 179.97438 * 9 8 5 11 11 H 1.08003 * 120.00059 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00008 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99923 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00021 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47070 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47397 * 119.99967 * 14 12 10 17 17 H 1.48498 * 109.47336 * 240.00354 * 14 12 10 18 18 C 1.53007 * 109.46646 * 240.00266 * 2 1 3 19 19 C 1.52996 * 109.47060 * 54.08635 * 18 2 1 20 20 C 1.52994 * 109.46912 * 294.08049 * 18 2 1 21 21 C 1.50703 * 109.46685 * 174.08594 * 18 2 1 22 22 C 1.38236 * 119.99795 * 172.22782 * 21 18 2 23 23 C 1.38241 * 120.00026 * 180.02562 * 22 21 18 24 24 C 1.38233 * 119.99588 * 359.97438 * 23 22 21 25 25 C 1.38231 * 120.00623 * 0.26215 * 24 23 22 26 26 C 1.38234 * 120.00402 * 352.24287 * 21 18 2 27 27 H 1.09001 * 109.47234 * 176.10418 * 1 2 3 28 28 H 1.09008 * 109.46760 * 296.10522 * 1 2 3 29 29 H 1.08998 * 109.47276 * 56.10372 * 1 2 3 30 30 H 0.97003 * 119.99810 * 88.70569 * 4 2 1 31 31 H 1.09003 * 109.47181 * 299.99920 * 8 5 4 32 32 H 1.08999 * 109.47018 * 59.99947 * 8 5 4 33 33 H 1.09003 * 109.46777 * 299.99916 * 9 8 5 34 34 H 1.08999 * 109.47378 * 59.99916 * 9 8 5 35 35 H 0.96999 * 119.99485 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.46817 * 179.97438 * 19 18 2 37 37 H 1.08997 * 109.47037 * 299.99696 * 19 18 2 38 38 H 1.08991 * 109.47462 * 59.99992 * 19 18 2 39 39 H 1.08994 * 109.47689 * 300.00421 * 20 18 2 40 40 H 1.08997 * 109.47039 * 60.00394 * 20 18 2 41 41 H 1.09000 * 109.47024 * 180.02562 * 20 18 2 42 42 H 1.07997 * 120.00052 * 0.02562 * 22 21 18 43 43 H 1.07992 * 119.99803 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.99643 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00138 * 179.71859 * 25 24 23 46 46 H 1.08007 * 120.00110 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.3248 0.1660 2.5797 6 8 2.8312 -0.8032 3.4871 7 8 3.1286 1.2550 2.1470 8 6 0.6952 0.7527 3.1191 9 6 0.8467 1.5685 4.4046 10 6 -0.5070 2.0564 4.8524 11 1 -1.3874 1.8090 4.2778 12 6 -0.6217 2.8178 5.9961 13 7 0.4503 3.1187 6.6960 14 14 -2.2998 3.4220 6.5515 15 1 -3.3362 2.9502 5.5983 16 1 -2.5944 2.8891 7.9059 17 1 -2.3030 4.9064 6.5921 18 6 2.0399 -0.7212 -1.2494 19 6 1.4121 -0.0908 -2.4941 20 6 1.6549 -2.2002 -1.1772 21 6 3.5398 -0.5957 -1.3248 22 6 4.2454 -1.3028 -2.2803 23 6 5.6213 -1.1881 -2.3492 24 6 6.2914 -0.3659 -1.4628 25 6 5.5864 0.3374 -0.5041 26 6 4.2101 0.2262 -0.4382 27 1 -0.3634 -1.0253 -0.0698 28 1 -0.3633 0.4522 0.9229 29 1 -0.3634 0.5731 -0.8530 30 1 2.1622 -1.6498 1.1775 31 1 0.2587 1.3790 2.3411 32 1 0.0447 -0.1019 3.3053 33 1 1.2834 0.9426 5.1828 34 1 1.4970 2.4231 4.2181 35 1 0.3695 3.6547 7.5004 36 1 1.7757 -0.6044 -3.3841 37 1 0.3273 -0.1816 -2.4395 38 1 1.6864 0.9627 -2.5454 39 1 2.1021 -2.6493 -0.2905 40 1 0.5701 -2.2910 -1.1226 41 1 2.0186 -2.7141 -2.0670 42 1 3.7217 -1.9448 -2.9731 43 1 6.1725 -1.7408 -3.0954 44 1 7.3664 -0.2766 -1.5163 45 1 6.1105 0.9762 0.1913 46 1 3.6589 0.7782 0.3088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111339149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:56 Heat of formation + Delta-G solvation = -60.429431 kcal Electronic energy + Delta-G solvation = -26671.365659 eV Core-core repulsion = 23073.666290 eV Total energy + Delta-G solvation = -3597.699369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.29814 -37.57047 -36.60263 -35.48889 -33.93429 -33.53478 -31.25745 -30.79226 -30.41118 -28.76805 -27.31604 -25.65005 -24.57211 -22.50275 -21.85928 -21.52596 -19.17303 -19.02896 -17.92608 -16.89936 -16.44372 -16.24390 -15.48053 -15.18350 -15.05338 -14.69031 -14.57275 -14.29087 -13.93535 -13.61926 -13.54161 -13.43868 -13.10091 -12.62976 -12.48203 -12.40649 -12.25552 -11.92226 -11.82482 -11.68312 -11.59885 -11.56419 -11.41293 -11.21656 -11.11984 -11.09852 -10.86928 -10.67415 -10.42193 -10.36578 -10.28032 -9.82357 -9.47084 -9.03896 -8.82452 -8.66227 -8.51836 -6.13715 -4.19231 0.77655 1.39066 1.47595 3.12366 3.24328 3.31734 3.34846 3.83028 4.21777 4.34763 4.38164 4.41839 4.65291 4.85299 4.97877 5.01275 5.06810 5.17845 5.19902 5.21679 5.23007 5.28791 5.47046 5.50827 5.55863 5.61775 5.67324 5.69300 5.74143 5.79416 5.83975 5.90528 5.95708 6.06337 6.16448 6.22048 6.28499 6.50064 6.51645 6.67113 6.72554 7.08761 7.13472 7.28749 7.34788 7.79427 8.16124 8.84399 9.45688 10.97362 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020713 B = 0.003411 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.471862 B = 8206.045598 C = 8927.902524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.150 3.850 3 H 0.096 0.904 4 N -1.121 6.121 5 S 2.588 3.412 6 O -0.967 6.967 7 O -0.965 6.965 8 C -0.592 4.592 9 C 0.028 3.972 10 C -0.519 4.519 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.023 4.023 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.074 4.074 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.116 4.116 26 C -0.125 4.125 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.412 0.588 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -9.400 -20.494 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.043 3.957 3 H 0.114 0.886 4 N -0.879 5.879 5 S 2.686 3.314 6 O -0.957 6.957 7 O -0.955 6.955 8 C -0.725 4.725 9 C -0.011 4.011 10 C -0.559 4.559 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.025 4.025 19 C -0.198 4.198 20 C -0.200 4.200 21 C -0.074 4.074 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.134 4.134 26 C -0.142 4.142 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.248 0.752 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.739 -9.006 -19.963 22.407 hybrid contribution -1.360 -0.063 0.296 1.394 sum 3.379 -9.068 -19.667 21.919 Atomic orbital electron populations 1.22661 0.95102 1.03303 1.03555 1.20853 0.93863 0.96744 0.84236 0.88581 1.55934 1.84371 1.20877 1.26714 1.05662 0.78613 0.74277 0.72829 1.93555 1.78849 1.60092 1.63199 1.93462 1.66125 1.55854 1.80016 1.30591 1.19540 1.11227 1.11140 1.18970 0.99885 0.94464 0.87815 1.21033 0.92325 1.33122 1.09395 0.91981 1.25071 0.97079 0.95955 0.96402 1.69965 1.28311 1.37868 1.16660 0.86423 0.83685 0.78588 0.78647 1.19638 1.20814 1.20789 1.19671 0.91322 0.96487 0.95026 1.21953 1.00826 1.01114 0.95918 1.21954 1.01797 0.94079 1.02131 1.19756 0.94449 0.97264 0.95938 1.20911 0.94057 0.99986 0.98723 1.21039 0.94436 0.99521 0.99512 1.21160 0.99670 0.97667 0.96111 1.21270 0.94661 0.99278 0.98170 1.22019 0.95064 0.98114 0.99019 0.91391 0.91055 0.90917 0.75213 0.86004 0.86031 0.94930 0.94804 0.92581 0.92209 0.91440 0.92065 0.92222 0.91551 0.92189 0.86515 0.86586 0.86541 0.86001 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 8.65 37.16 0.32 -1.46 16 2 C 0.15 1.67 1.50 -67.93 -0.10 1.57 16 3 H 0.10 1.17 6.22 -51.93 -0.32 0.84 16 4 N -1.12 -14.32 4.21 -4.89 -0.02 -14.34 16 5 S 2.59 45.36 5.43 -107.50 -0.58 44.77 16 6 O -0.97 -20.14 18.08 -57.54 -1.04 -21.18 16 7 O -0.96 -18.83 14.81 -57.54 -0.85 -19.68 16 8 C -0.59 -11.01 5.07 37.16 0.19 -10.83 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 11 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 14 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C -0.02 -0.22 0.46 -155.66 -0.07 -0.30 16 19 C -0.14 -1.11 7.84 37.16 0.29 -0.82 16 20 C -0.14 -1.15 7.70 37.15 0.29 -0.87 16 21 C -0.07 -0.86 4.63 -104.62 -0.48 -1.34 16 22 C -0.12 -1.23 8.81 -39.58 -0.35 -1.58 16 23 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 25 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 26 C -0.12 -1.75 8.55 -39.58 -0.34 -2.09 16 27 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 28 H 0.07 0.76 5.27 -51.92 -0.27 0.48 16 29 H 0.07 0.57 6.57 -51.93 -0.34 0.23 16 30 H 0.41 4.65 6.64 -34.47 -0.23 4.42 16 31 H 0.12 2.00 6.45 -51.92 -0.33 1.67 16 32 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 0.43 7.91 -51.93 -0.41 0.01 16 37 H 0.07 0.45 6.42 -51.93 -0.33 0.11 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.51 6.28 -51.93 -0.33 0.19 16 40 H 0.07 0.47 6.51 -51.93 -0.34 0.13 16 41 H 0.06 0.43 7.00 -51.93 -0.36 0.07 16 42 H 0.12 0.96 7.12 -52.49 -0.37 0.59 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 45 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 46 H 0.15 2.35 2.56 -52.48 -0.13 2.22 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -33.97 363.76 -9.92 -43.89 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.62 Total: 6.28 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: -2.00 Total: -35.64 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.72 Total: -39.92 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.89 Total: -40.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 45.36 SS G_CDS: -0.58 Total: 44.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.97 -9.92 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111339149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.539 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds