Wall clock time and date at job start Tue Mar 31 2020 14:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47372 * 2 1 4 4 C 1.53005 * 109.46902 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.46472 * 179.97438 * 4 3 2 6 6 C 1.42904 * 113.99570 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47039 * 30.00632 * 6 5 4 8 8 C 1.52995 * 109.47296 * 270.00087 * 6 5 4 9 9 C 1.50701 * 109.46788 * 150.00297 * 6 5 4 10 10 O 1.21299 * 120.00419 * 5.00043 * 9 6 5 11 11 N 1.34782 * 119.99804 * 185.00582 * 9 6 5 12 12 C 1.40094 * 119.99668 * 175.92115 * 11 9 6 13 13 C 1.38704 * 120.07893 * 34.57054 * 12 11 9 14 14 C 1.38189 * 120.01968 * 179.70426 * 13 12 11 15 15 C 1.38556 * 120.17572 * 0.58950 * 14 13 12 16 16 F 1.35094 * 119.92306 * 179.70023 * 15 14 13 17 17 C 1.38351 * 120.15200 * 359.68834 * 15 14 13 18 18 C 1.38738 * 119.97481 * 0.02562 * 17 15 14 19 19 O 1.35779 * 120.08544 * 179.97438 * 18 17 15 20 20 C 1.34811 * 116.99758 * 5.43793 * 19 18 17 21 21 H 1.07994 * 119.99938 * 354.94993 * 20 19 18 22 22 C 1.38640 * 119.99816 * 174.95051 * 20 19 18 23 23 N 1.31561 * 119.99865 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99979 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.46983 * 89.99875 * 24 22 20 26 26 H 1.48500 * 109.47143 * 210.00056 * 24 22 20 27 27 H 1.48498 * 109.47353 * 329.99978 * 24 22 20 28 28 H 1.08998 * 109.46913 * 59.99785 * 1 2 3 29 29 H 1.08997 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47012 * 300.00365 * 1 2 3 31 31 H 1.09003 * 109.47012 * 239.99635 * 2 1 3 32 32 H 1.08998 * 109.46913 * 120.00215 * 2 1 3 33 33 H 1.08994 * 109.47230 * 59.99673 * 3 2 1 34 34 H 1.09003 * 109.46902 * 299.99692 * 3 2 1 35 35 H 1.08993 * 109.47301 * 60.00188 * 4 3 2 36 36 H 1.09003 * 109.46957 * 299.99494 * 4 3 2 37 37 H 1.09003 * 109.47003 * 180.02562 * 8 6 5 38 38 H 1.09003 * 109.47096 * 300.00195 * 8 6 5 39 39 H 1.09004 * 109.47293 * 60.00106 * 8 6 5 40 40 H 0.96992 * 119.99714 * 355.63773 * 11 9 6 41 41 H 1.08004 * 119.99204 * 359.97291 * 13 12 11 42 42 H 1.07996 * 119.91442 * 180.29994 * 14 13 12 43 43 H 1.07995 * 120.00569 * 180.02562 * 17 15 14 44 44 H 0.97002 * 119.99951 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.4710 2.9025 -0.0013 7 1 5.9034 2.0438 -0.5148 8 6 5.9794 2.9433 1.4411 9 6 5.8746 4.1685 -0.7122 10 8 5.0260 4.9469 -1.0936 11 7 7.1785 4.4358 -0.9244 12 6 7.5505 5.5688 -1.6596 13 6 6.8010 6.7324 -1.5703 14 6 7.1726 7.8512 -2.2914 15 6 8.2865 7.8111 -3.1143 16 9 8.6417 8.9060 -3.8216 17 6 9.0361 6.6524 -3.2132 18 6 8.6721 5.5274 -2.4876 19 8 9.4058 4.3889 -2.5834 20 6 10.5386 4.4503 -3.3117 21 1 10.7840 5.3518 -3.8534 22 6 11.3885 3.3563 -3.3652 23 7 12.4937 3.4161 -4.0763 24 14 10.9642 1.7973 -2.4276 25 1 10.1593 0.9010 -3.2960 26 1 12.2152 1.1052 -2.0261 27 1 10.1808 2.1464 -1.2153 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8908 36 1 3.9338 0.9285 0.8892 37 1 7.0660 3.0298 1.4410 38 1 5.5470 3.8021 1.9546 39 1 5.6875 2.0276 1.9554 40 1 7.8592 3.8460 -0.5647 41 1 5.9291 6.7655 -0.9338 42 1 6.5905 8.7578 -2.2168 43 1 9.9041 6.6239 -3.8551 44 1 13.0882 2.6505 -4.1140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120658023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:56 Heat of formation + Delta-G solvation = -139.697917 kcal Electronic energy + Delta-G solvation = -27321.674644 eV Core-core repulsion = 23154.324759 eV Total energy + Delta-G solvation = -4167.349885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.32138 -40.42542 -39.11569 -37.95241 -36.47210 -35.25929 -34.30809 -32.56015 -31.81100 -29.64647 -29.17437 -28.37717 -25.52205 -24.74483 -23.47615 -22.39656 -21.62396 -21.41171 -20.05836 -18.43189 -18.09444 -17.26365 -17.20497 -16.51135 -16.10039 -15.59749 -15.39869 -15.09847 -15.02357 -14.79853 -14.33360 -14.16448 -13.98970 -13.83603 -13.54480 -13.46077 -13.30469 -13.05045 -12.55956 -12.49293 -12.45678 -12.34469 -11.97685 -11.91481 -11.58287 -11.45377 -11.38754 -11.11229 -11.00318 -10.94102 -10.81532 -10.51132 -10.01302 -9.80003 -9.72938 -9.31478 -9.05059 -8.02719 -7.32241 -6.58759 -4.26392 1.66020 1.97634 2.72669 2.86862 3.06959 3.09865 3.16685 3.76661 4.03966 4.18872 4.46897 4.58836 4.61324 4.72253 4.76968 4.78962 4.88938 4.92344 4.94476 5.01558 5.13049 5.30160 5.35772 5.44736 5.49010 5.52117 5.54058 5.60820 5.65368 5.80955 5.85689 5.89840 5.95498 6.01713 6.03502 6.36436 6.66849 6.77226 6.81379 6.87116 6.98902 7.40754 7.58268 7.69162 7.82672 8.34657 8.73923 9.28577 10.48385 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010408 B = 0.003453 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.482980 B = 8107.011455 C =10150.353082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.058 3.942 5 O -0.356 6.356 6 C 0.073 3.927 7 H 0.089 0.911 8 C -0.171 4.171 9 C 0.511 3.489 10 O -0.510 6.510 11 N -0.651 5.651 12 C 0.058 3.942 13 C -0.049 4.049 14 C -0.222 4.222 15 C 0.132 3.868 16 F -0.148 7.148 17 C -0.246 4.246 18 C 0.167 3.833 19 O -0.208 6.208 20 C -0.392 4.392 21 H 0.109 0.891 22 C 0.066 3.934 23 N -0.871 5.871 24 Si 0.907 3.093 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.411 0.589 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.150 0.850 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.993 -5.658 10.616 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.019 4.019 5 O -0.274 6.274 6 C 0.011 3.989 7 H 0.106 0.894 8 C -0.229 4.229 9 C 0.297 3.703 10 O -0.385 6.385 11 N -0.298 5.298 12 C -0.036 4.036 13 C -0.069 4.069 14 C -0.242 4.242 15 C 0.112 3.888 16 F -0.127 7.127 17 C -0.267 4.267 18 C 0.112 3.888 19 O -0.112 6.112 20 C -0.467 4.467 21 H 0.127 0.873 22 C -0.138 4.138 23 N -0.507 5.507 24 Si 0.732 3.268 25 H -0.198 1.198 26 H -0.206 1.206 27 H -0.185 1.185 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.247 0.753 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.167 0.833 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.557 -5.312 10.331 19.416 hybrid contribution 0.772 -1.003 0.136 1.273 sum -14.785 -6.316 10.467 19.184 Atomic orbital electron populations 1.21752 0.95396 1.01662 1.02104 1.21447 0.96281 0.96036 1.02209 1.21538 0.93194 0.97183 1.03686 1.22661 0.95426 0.83575 1.00223 1.88025 1.18285 1.26159 1.94950 1.21838 0.83727 0.96542 0.96748 0.89373 1.22254 1.01943 1.03776 0.94952 1.20389 0.82321 0.87715 0.79895 1.90684 1.50051 1.48242 1.49489 1.43055 1.07246 1.26232 1.53217 1.16857 0.98462 0.87998 1.00296 1.20659 0.98651 0.89300 0.98334 1.20562 0.99585 1.00160 1.03895 1.17478 0.95158 0.82908 0.93266 1.91429 1.91742 1.52517 1.76975 1.20985 1.05256 0.92314 1.08102 1.18528 0.91534 0.86473 0.92240 1.83518 1.34253 1.28631 1.64793 1.20781 0.95543 1.03955 1.26455 0.87326 1.24477 0.94014 0.98763 0.96583 1.69639 1.10663 1.32123 1.38297 0.86182 0.78251 0.81710 0.80665 1.19752 1.20581 1.18517 0.92520 0.92654 0.92619 0.91782 0.91886 0.91032 0.90857 0.93122 0.93193 0.90702 0.90900 0.91173 0.75336 0.83937 0.85632 0.83272 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.01 16 3 C -0.12 -1.06 5.58 -26.73 -0.15 -1.20 16 4 C 0.06 0.57 5.75 37.16 0.21 0.79 16 5 O -0.36 -4.81 9.53 -55.09 -0.52 -5.33 16 6 C 0.07 0.92 3.13 -27.89 -0.09 0.83 16 7 H 0.09 0.96 7.79 -51.93 -0.40 0.56 16 8 C -0.17 -1.67 9.47 37.15 0.35 -1.32 16 9 C 0.51 8.33 7.02 -10.98 -0.08 8.26 16 10 O -0.51 -9.98 13.93 -14.32 -0.20 -10.18 16 11 N -0.65 -10.90 5.15 -9.71 -0.05 -10.95 16 12 C 0.06 1.12 6.33 -83.45 -0.53 0.59 16 13 C -0.05 -0.90 8.69 -39.43 -0.34 -1.25 16 14 C -0.22 -3.97 10.02 -39.48 -0.40 -4.36 16 15 C 0.13 2.57 7.29 -39.42 -0.29 2.29 16 16 F -0.15 -2.81 17.26 2.25 0.04 -2.77 16 17 C -0.25 -5.27 9.14 -39.36 -0.36 -5.63 16 18 C 0.17 3.63 6.66 -38.94 -0.26 3.37 16 19 O -0.21 -4.93 8.15 0.01 0.00 -4.93 16 20 C -0.39 -10.29 9.95 30.88 0.31 -9.98 16 21 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 22 C 0.07 1.73 5.49 -17.52 -0.10 1.64 16 23 N -0.87 -23.84 13.96 55.48 0.77 -23.07 16 24 Si 0.91 19.64 28.62 -169.99 -4.86 14.78 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 37 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.55 7.87 -51.93 -0.41 0.15 16 40 H 0.41 6.18 8.22 -40.82 -0.34 5.84 16 41 H 0.14 2.54 6.20 -52.48 -0.33 2.21 16 42 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.15 3.34 5.64 -52.49 -0.30 3.05 16 44 H 0.28 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -29.73 374.70 -6.91 -36.63 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.23 Total: 7.79 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.50 Total: -7.61 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.72 Total: -34.02 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.72 Total: -20.44 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.86 Total: 14.78 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.73 -6.91 -36.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120658023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.064 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds