Wall clock time and date at job start Tue Mar 31 2020 14:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.52997 * 109.47060 * 294.99684 * 3 2 1 6 6 C 1.53002 * 109.47233 * 175.00027 * 3 2 1 7 7 S 1.81389 * 109.47346 * 184.99797 * 6 3 2 8 8 O 1.42105 * 110.54235 * 291.62353 * 7 6 3 9 9 O 1.42105 * 110.54584 * 68.37050 * 7 6 3 10 10 N 1.65596 * 104.45192 * 179.97438 * 7 6 3 11 11 C 1.46500 * 120.00250 * 64.99706 * 10 7 6 12 12 H 1.09005 * 109.46620 * 25.00107 * 11 10 7 13 13 C 1.52997 * 109.47434 * 144.99842 * 11 10 7 14 14 C 1.50701 * 109.47616 * 295.00463 * 13 11 10 15 15 H 1.08009 * 119.99620 * 0.02562 * 14 13 11 16 16 C 1.37876 * 120.00268 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99791 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99785 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46934 * 90.00207 * 18 16 14 20 20 H 1.48502 * 109.46940 * 210.00005 * 18 16 14 21 21 H 1.48502 * 109.47250 * 329.99820 * 18 16 14 22 22 C 1.50700 * 109.47213 * 265.00426 * 11 10 7 23 23 C 1.38229 * 119.99959 * 319.72392 * 22 11 10 24 24 C 1.38234 * 119.99799 * 179.79110 * 23 22 11 25 25 C 1.38230 * 120.00202 * 0.43797 * 24 23 22 26 26 C 1.38240 * 119.99778 * 359.81203 * 25 24 23 27 27 C 1.38231 * 120.00158 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 30 30 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 31 31 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 32 32 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 34 34 H 1.08996 * 109.47853 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 36 36 H 1.09008 * 109.46873 * 304.99791 * 6 3 2 37 37 H 1.08997 * 109.47047 * 64.99480 * 6 3 2 38 38 H 0.97002 * 120.00074 * 245.00035 * 10 7 6 39 39 H 1.09001 * 109.46729 * 55.00540 * 13 11 10 40 40 H 1.09002 * 109.47177 * 175.00378 * 13 11 10 41 41 H 0.97002 * 119.99601 * 179.97438 * 17 16 14 42 42 H 1.08003 * 120.00111 * 0.02562 * 23 22 11 43 43 H 1.08004 * 119.99842 * 180.27827 * 24 23 22 44 44 H 1.07998 * 120.00261 * 179.83730 * 25 24 23 45 45 H 1.08005 * 119.99670 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.00075 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 16 4.1572 3.1524 0.2743 8 8 3.9596 3.8565 -0.9441 9 8 3.7568 3.7128 1.5174 10 7 5.8020 3.0098 0.4022 11 6 6.5808 2.4800 -0.7199 12 1 6.0386 2.6490 -1.6503 13 6 7.9342 3.1908 -0.7821 14 6 7.7219 4.6491 -1.0974 15 1 6.7215 5.0309 -1.2389 16 6 8.8045 5.4961 -1.2042 17 7 10.0225 5.0315 -1.0305 18 14 8.5411 7.3038 -1.5944 19 1 8.3852 8.0656 -0.3293 20 1 9.7125 7.8241 -2.3444 21 1 7.3164 7.4588 -2.4198 22 6 6.7983 1.0014 -0.5267 23 6 7.0846 0.5034 0.7306 24 6 7.2798 -0.8535 0.9085 25 6 7.1977 -1.7112 -0.1724 26 6 6.9165 -1.2125 -1.4307 27 6 6.7169 0.1438 -1.6079 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.5490 2.1252 -1.3971 34 1 1.9989 3.1540 -1.3077 35 1 2.0699 1.5874 -2.1492 36 1 3.8571 0.8801 1.0114 37 1 4.0029 0.9837 -0.7596 38 1 6.2499 3.2769 1.2201 39 1 8.4385 3.0967 0.1797 40 1 8.5478 2.7365 -1.5600 41 1 10.7842 5.6274 -1.1060 42 1 7.1520 1.1739 1.5746 43 1 7.4991 -1.2432 1.8916 44 1 7.3528 -2.7710 -0.0338 45 1 6.8527 -1.8827 -2.2753 46 1 6.4976 0.5334 -2.5910 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124513496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:54 Heat of formation + Delta-G solvation = -94.919139 kcal Electronic energy + Delta-G solvation = -26684.100850 eV Core-core repulsion = 23084.905895 eV Total energy + Delta-G solvation = -3599.194955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.33597 -38.20822 -37.97832 -37.19927 -36.91466 -34.68676 -31.97583 -31.67821 -31.50366 -30.40511 -28.46367 -26.53327 -24.75186 -23.78324 -23.28901 -21.60895 -21.21793 -20.21138 -18.87594 -18.41650 -17.73567 -17.47423 -17.07044 -16.51346 -16.13868 -16.08018 -15.82035 -15.48154 -15.09483 -14.54015 -14.45724 -14.32889 -14.17225 -14.13457 -13.92559 -13.54136 -13.43110 -13.11269 -13.03246 -12.98461 -12.89669 -12.73037 -12.54926 -12.48270 -12.39598 -12.31226 -12.12914 -11.83886 -11.80603 -11.62998 -11.50059 -11.34430 -11.14735 -10.57682 -10.24439 -9.70613 -9.50149 -8.19355 -6.26540 -0.67780 0.52691 0.61215 1.36538 1.37669 1.49487 1.83126 2.40544 2.82434 2.99109 3.14614 3.25487 3.49251 3.74577 3.89159 3.93579 4.06725 4.23605 4.28657 4.32594 4.40908 4.41355 4.54960 4.56516 4.62920 4.67936 4.74542 4.76584 4.85829 4.96586 5.01002 5.09005 5.16166 5.19161 5.21568 5.27770 5.39978 5.45590 5.51482 5.59353 5.67756 5.71980 5.80960 5.93867 6.17317 6.21938 6.26709 6.88045 7.41305 8.91285 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.005079 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.552188 B = 5511.755316 C = 7333.165022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 C -0.084 4.084 4 H 0.081 0.919 5 C -0.189 4.189 6 C -0.596 4.596 7 S 2.600 3.400 8 O -0.990 6.990 9 O -1.000 7.000 10 N -1.098 6.098 11 C 0.202 3.798 12 H 0.082 0.918 13 C 0.038 3.962 14 C -0.527 4.527 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.943 3.057 19 H -0.275 1.275 20 H -0.277 1.277 21 H -0.272 1.272 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.129 4.129 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.416 0.584 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.263 0.737 42 H 0.118 0.882 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 -17.617 2.442 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.145 4.145 3 C -0.104 4.104 4 H 0.100 0.900 5 C -0.246 4.246 6 C -0.729 4.729 7 S 2.698 3.302 8 O -0.980 6.980 9 O -0.991 6.991 10 N -0.855 5.855 11 C 0.094 3.906 12 H 0.100 0.900 13 C 0.000 4.000 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.769 3.231 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.197 1.197 22 C -0.109 4.109 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.136 4.136 27 C -0.148 4.148 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.173 0.827 37 H 0.164 0.836 38 H 0.251 0.749 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.136 0.864 43 H 0.159 0.841 44 H 0.165 0.835 45 H 0.163 0.837 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.701 -16.729 2.276 22.386 hybrid contribution 0.900 1.054 0.103 1.390 sum -13.801 -15.674 2.380 21.019 Atomic orbital electron populations 1.21890 0.94813 1.02564 1.02335 1.21507 0.96587 0.93092 1.03284 1.21029 0.89452 1.00522 0.99397 0.90024 1.22417 1.04015 1.00784 0.97353 1.30512 1.06607 1.22132 1.13664 1.05029 0.73023 0.79065 0.73122 1.93545 1.84848 1.71522 1.48043 1.93513 1.82135 1.78039 1.45391 1.55209 1.24732 1.80772 1.24776 1.19669 0.94638 0.88423 0.87826 0.90042 1.19130 0.90898 0.93693 0.96302 1.21554 0.92717 0.95146 1.47149 0.92902 1.25706 0.95080 1.02579 0.95516 1.70053 0.98573 1.36750 1.51289 0.85772 0.77801 0.80972 0.78549 1.20080 1.20257 1.19686 1.20452 1.00688 0.94818 0.94906 1.21102 0.99595 0.96233 0.96730 1.21409 0.99724 0.92749 1.00258 1.21466 0.99441 1.00823 0.92462 1.21381 0.99219 0.94616 0.98405 1.21242 1.01070 0.94187 0.98309 0.91431 0.92571 0.92073 0.90832 0.90794 0.89323 0.93200 0.90782 0.82685 0.83588 0.74933 0.97319 0.97354 0.92855 0.86370 0.84145 0.83546 0.83747 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.67 71.98 0.70 -1.32 16 2 C -0.11 -1.56 5.40 30.60 0.17 -1.40 16 3 C -0.08 -1.67 2.39 -10.79 -0.03 -1.70 16 4 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 5 C -0.19 -4.07 8.64 71.98 0.62 -3.45 16 6 C -0.60 -13.24 5.17 71.98 0.37 -12.87 16 7 S 2.60 87.44 5.09 -56.49 -0.29 87.15 16 8 O -0.99 -40.53 15.14 -127.65 -1.93 -42.46 16 9 O -1.00 -38.50 18.08 -127.65 -2.31 -40.81 16 10 N -1.10 -39.43 4.38 -172.52 -0.76 -40.18 16 11 C 0.20 7.74 2.35 44.24 0.10 7.85 16 12 H 0.08 3.21 7.34 -2.38 -0.02 3.19 16 13 C 0.04 1.91 4.55 29.85 0.14 2.04 16 14 C -0.53 -29.90 8.84 25.60 0.23 -29.67 16 15 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 16 C 0.01 0.54 5.46 84.66 0.46 1.00 16 17 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 18 Si 0.94 45.96 29.54 68.60 2.03 47.98 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 22 C -0.11 -3.30 4.21 -19.87 -0.08 -3.38 16 23 C -0.12 -3.27 9.32 22.27 0.21 -3.06 16 24 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 25 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 26 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 27 C -0.13 -3.46 9.67 22.27 0.22 -3.25 16 28 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.75 6.57 -2.39 -0.02 0.74 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.51 6.56 -2.39 -0.02 1.50 16 34 H 0.05 1.36 5.61 -2.39 -0.01 1.35 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.16 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.15 2.98 7.75 -2.39 -0.02 2.96 16 38 H 0.42 14.75 8.60 -96.74 -0.83 13.92 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.12 3.26 7.57 -2.91 -0.02 3.24 16 43 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 46 H 0.13 3.18 8.04 -2.91 -0.02 3.16 16 Total: -1.00 -74.13 384.17 0.92 -73.21 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.12 Total: 26.52 kcal Atomic # 6 Polarization: -59.92 SS G_CDS: 3.77 Total: -56.15 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -0.47 Total: -95.44 kcal Atomic # 8 Polarization: -79.03 SS G_CDS: -4.24 Total: -83.27 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 87.44 SS G_CDS: -0.29 Total: 87.15 kcal Total: -74.13 0.92 -73.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124513496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.705 kcal (2) G-P(sol) polarization free energy of solvation -74.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds