Wall clock time and date at job start Tue Mar 31 2020 14:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46973 * 2 1 4 4 N 1.46501 * 109.47167 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00364 * 275.96630 * 4 3 2 6 6 H 1.07994 * 119.99946 * 146.59552 * 5 4 3 7 7 C 1.38811 * 119.99609 * 326.59816 * 5 4 3 8 8 N 1.31619 * 120.00564 * 336.10203 * 7 5 4 9 9 Si 1.86808 * 119.99492 * 156.10369 * 7 5 4 10 10 H 1.48498 * 109.47341 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46975 * 120.00129 * 9 7 5 12 12 H 1.48496 * 109.46832 * 239.99631 * 9 7 5 13 13 S 1.65605 * 119.99856 * 95.96764 * 4 3 2 14 14 O 1.42091 * 106.40334 * 156.46188 * 13 4 3 15 15 O 1.42104 * 106.40129 * 23.53901 * 13 4 3 16 16 C 1.76204 * 107.21630 * 270.00126 * 13 4 3 17 17 C 1.38240 * 119.99990 * 90.00056 * 16 13 4 18 18 C 1.38232 * 119.99908 * 179.97438 * 17 16 13 19 19 C 1.38233 * 119.99693 * 359.95466 * 18 17 16 20 20 C 1.50702 * 119.99716 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.47361 * 359.97438 * 20 19 18 22 22 C 1.53003 * 109.47476 * 239.99924 * 20 19 18 23 23 C 1.53002 * 109.47381 * 119.99889 * 20 19 18 24 24 C 1.53002 * 109.47311 * 185.00094 * 23 20 19 25 25 C 1.38230 * 120.00590 * 0.27872 * 19 18 17 26 26 C 1.38234 * 119.99857 * 359.51098 * 25 19 18 27 27 H 1.08996 * 109.47545 * 300.00034 * 1 2 3 28 28 H 1.08998 * 109.47284 * 60.00254 * 1 2 3 29 29 H 1.09002 * 109.46740 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46853 * 240.00076 * 2 1 3 31 31 H 1.09005 * 109.47099 * 120.00076 * 2 1 3 32 32 H 1.09001 * 109.47269 * 60.00330 * 3 2 1 33 33 H 1.09005 * 109.47270 * 299.99971 * 3 2 1 34 34 H 0.96995 * 120.00081 * 180.02562 * 8 7 5 35 35 H 1.07998 * 119.99893 * 359.97438 * 17 16 13 36 36 H 1.07999 * 120.00106 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.46780 * 59.99909 * 22 20 19 38 38 H 1.08996 * 109.47423 * 179.97438 * 22 20 19 39 39 H 1.08997 * 109.46863 * 300.00697 * 22 20 19 40 40 H 1.09004 * 109.47158 * 305.00098 * 23 20 19 41 41 H 1.08998 * 109.46997 * 65.00257 * 23 20 19 42 42 H 1.08995 * 109.46824 * 300.00004 * 24 23 20 43 43 H 1.08998 * 109.46956 * 60.00138 * 24 23 20 44 44 H 1.09005 * 109.47106 * 180.02562 * 24 23 20 45 45 H 1.08004 * 120.00565 * 179.73189 * 25 19 18 46 46 H 1.07999 * 120.00386 * 180.25476 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3194 1.1804 6 1 5.1354 0.7993 1.2041 7 6 3.6666 1.8632 2.3457 8 7 2.8112 2.8614 2.2804 9 14 4.1775 1.1781 4.0069 10 1 5.1420 0.0666 3.8085 11 1 4.8167 2.2515 4.8096 12 1 2.9793 0.6714 4.7229 13 16 4.3336 1.5914 -1.4255 14 8 5.6163 2.1041 -1.0926 15 8 3.4522 2.2338 -2.3364 16 6 4.5946 -0.0357 -2.0494 17 6 3.6604 -0.6118 -2.8899 18 6 3.8655 -1.8880 -3.3797 19 6 5.0051 -2.5878 -3.0298 20 6 5.2290 -3.9789 -3.5643 21 1 4.3925 -4.2616 -4.2036 22 6 5.3335 -4.9630 -2.3974 23 6 6.5255 -4.0110 -4.3760 24 6 6.6892 -5.3885 -5.0216 25 6 5.9369 -2.0136 -2.1855 26 6 5.7340 -0.7357 -1.6991 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.4464 3.2415 3.0947 35 1 2.7704 -0.0648 -3.1638 36 1 3.1355 -2.3383 -4.0360 37 1 4.4098 -4.9402 -1.8191 38 1 5.4949 -5.9692 -2.7840 39 1 6.1696 -4.6806 -1.7577 40 1 6.4864 -3.2478 -5.1534 41 1 7.3716 -3.8157 -3.7172 42 1 6.7282 -6.1516 -4.2443 43 1 5.8431 -5.5838 -5.6804 44 1 7.6131 -5.4114 -5.5995 45 1 6.8252 -2.5620 -1.9086 46 1 6.4640 -0.2854 -1.0427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128058675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:26 Heat of formation + Delta-G solvation = -67.481507 kcal Electronic energy + Delta-G solvation = -26590.658434 eV Core-core repulsion = 22992.653265 eV Total energy + Delta-G solvation = -3598.005170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -39.48676 -36.28810 -36.15570 -35.99059 -34.65479 -32.58035 -31.26720 -30.86668 -30.77552 -28.85248 -25.85596 -25.06466 -23.67322 -22.89994 -22.24018 -20.62349 -19.93961 -18.57004 -17.72464 -16.73874 -16.32397 -15.73979 -15.49102 -14.77806 -14.60382 -14.39355 -14.20360 -13.97263 -13.86269 -13.38031 -13.34059 -13.06235 -12.97619 -12.73418 -12.32350 -12.23289 -11.88482 -11.80596 -11.66303 -11.47575 -11.27171 -11.09886 -11.01617 -10.96497 -10.89555 -10.87786 -10.73305 -10.62750 -10.57290 -10.35123 -10.08806 -9.96012 -9.67872 -9.06821 -8.79106 -8.74529 -7.68316 -6.23584 -3.91823 1.10194 1.57805 1.58430 3.20454 3.29601 3.33661 3.69155 4.18338 4.46759 4.52197 4.60415 4.78880 4.83863 4.97428 5.07843 5.13903 5.17782 5.22013 5.31883 5.41239 5.44826 5.58736 5.70201 5.73801 5.76414 5.78019 5.81006 5.83103 5.89161 5.98964 6.00611 6.10779 6.13999 6.23450 6.35513 6.43187 6.47881 6.52634 6.63725 6.65286 6.74128 6.92207 7.11793 7.34834 7.45307 7.82577 8.45426 9.03391 9.40905 10.78074 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.004099 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.451619 B = 6829.474846 C = 7050.028859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.114 3.886 4 N -0.841 5.841 5 C -0.286 4.286 6 H 0.091 0.909 7 C 0.040 3.960 8 N -0.857 5.857 9 Si 0.912 3.088 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.281 1.281 13 S 2.634 3.366 14 O -0.973 6.973 15 O -0.997 6.997 16 C -0.655 4.655 17 C -0.021 4.021 18 C -0.144 4.144 19 C -0.038 4.038 20 C -0.056 4.056 21 H 0.078 0.922 22 C -0.146 4.146 23 C -0.117 4.117 24 C -0.153 4.153 25 C -0.140 4.140 26 C -0.015 4.015 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.266 0.734 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.124 0.876 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 -14.550 -8.641 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C -0.013 4.013 4 N -0.672 5.672 5 C -0.421 4.421 6 H 0.109 0.891 7 C -0.167 4.167 8 N -0.497 5.497 9 Si 0.739 3.261 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.207 1.207 13 S 2.731 3.269 14 O -0.962 6.962 15 O -0.987 6.987 16 C -0.738 4.738 17 C -0.040 4.040 18 C -0.163 4.163 19 C -0.039 4.039 20 C -0.074 4.074 21 H 0.097 0.903 22 C -0.203 4.203 23 C -0.155 4.155 24 C -0.210 4.210 25 C -0.159 4.159 26 C -0.034 4.034 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.486 -13.680 -9.070 16.481 hybrid contribution 0.128 -1.028 0.815 1.318 sum 1.615 -14.708 -8.255 16.943 Atomic orbital electron populations 1.21685 0.96717 1.00405 1.01559 1.21966 0.94554 0.99825 1.01518 1.21468 0.80247 0.94728 1.04841 1.52578 1.11618 1.85529 1.17501 1.19089 1.06749 1.32377 0.83895 0.89130 1.25274 0.97733 0.94242 0.99482 1.69978 1.30899 1.20045 1.28743 0.86114 0.78508 0.79189 0.82314 1.19257 1.20810 1.20680 1.04535 0.74047 0.73802 0.74506 1.93436 1.42543 1.76617 1.83631 1.93412 1.66230 1.72660 1.66412 1.31490 1.02885 1.27600 1.11840 1.20876 0.96832 0.94254 0.92030 1.21078 0.97845 0.95202 1.02177 1.20035 0.93881 0.95085 0.94857 1.20262 0.98723 0.91482 0.96969 0.90350 1.21898 1.02450 0.98370 0.97575 1.21596 0.96916 0.97668 0.99305 1.21827 1.01499 0.97097 1.00593 1.21021 0.99794 0.95703 0.99384 1.20934 0.94606 0.93287 0.94614 0.92742 0.93191 0.93728 0.93661 0.91525 0.86528 0.92310 0.92355 0.84757 0.85867 0.92379 0.92150 0.92250 0.91782 0.91587 0.92411 0.92780 0.92766 0.85806 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.14 -2.63 6.22 -26.73 -0.17 -2.79 16 3 C 0.11 2.57 5.29 -4.04 -0.02 2.55 16 4 N -0.84 -20.47 2.85 -59.91 -0.17 -20.64 16 5 C -0.29 -7.36 8.87 -15.06 -0.13 -7.49 16 6 H 0.09 2.27 7.94 -52.49 -0.42 1.86 16 7 C 0.04 1.02 4.98 -17.43 -0.09 0.93 16 8 N -0.86 -22.80 11.27 55.49 0.63 -22.17 16 9 Si 0.91 19.87 29.62 -169.99 -5.03 14.83 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 S 2.63 61.59 5.65 -107.50 -0.61 60.98 16 14 O -0.97 -25.29 16.50 -57.17 -0.94 -26.23 16 15 O -1.00 -24.51 15.83 -57.17 -0.91 -25.41 16 16 C -0.65 -12.64 5.97 -39.58 -0.24 -12.87 16 17 C -0.02 -0.35 8.53 -39.58 -0.34 -0.69 16 18 C -0.14 -2.04 9.67 -39.59 -0.38 -2.42 16 19 C -0.04 -0.51 4.78 -104.63 -0.50 -1.01 16 20 C -0.06 -0.56 2.56 -91.77 -0.24 -0.79 16 21 H 0.08 0.72 7.88 -51.93 -0.41 0.31 16 22 C -0.15 -1.34 8.76 37.16 0.33 -1.02 16 23 C -0.12 -1.06 5.15 -26.73 -0.14 -1.20 16 24 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 25 C -0.14 -2.03 8.76 -39.59 -0.35 -2.38 16 26 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.80 7.11 -51.93 -0.37 0.44 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.12 2.86 5.31 -51.93 -0.28 2.59 16 33 H 0.06 1.30 6.90 -51.93 -0.36 0.94 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.13 2.19 7.62 -52.49 -0.40 1.79 16 36 H 0.12 1.40 7.95 -52.49 -0.42 0.98 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 39 H 0.06 0.55 7.37 -51.93 -0.38 0.17 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.60 7.58 -51.93 -0.39 0.20 16 42 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.12 1.48 7.16 -52.48 -0.38 1.10 16 46 H 0.14 2.41 7.62 -52.49 -0.40 2.01 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -30.61 378.71 -10.63 -41.25 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.40 Total: 4.20 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: -1.91 Total: -32.52 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.45 Total: -42.81 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -1.85 Total: -51.64 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.83 kcal Atomic # 16 Polarization: 61.59 SS G_CDS: -0.61 Total: 60.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.61 -10.63 -41.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128058675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.233 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds