Wall clock time and date at job start Tue Mar 31 2020 16:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42906 * 109.46862 * 143.05267 * 3 2 1 5 5 C 1.35905 * 116.99539 * 179.97438 * 4 3 2 6 6 C 1.38731 * 120.05155 * 179.97438 * 5 4 3 7 7 C 1.38147 * 119.94045 * 180.02562 * 6 5 4 8 8 C 1.38264 * 120.05584 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.94016 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47063 * 83.87488 * 9 8 7 11 11 C 1.46896 * 111.00178 * 76.07617 * 10 9 8 12 12 C 1.50695 * 109.47274 * 190.00067 * 11 10 9 13 13 H 1.08004 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00122 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00046 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99998 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47340 * 59.99592 * 16 14 12 18 18 H 1.48500 * 109.47209 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46966 * 299.99809 * 16 14 12 20 20 C 1.46898 * 110.99761 * 200.02866 * 10 9 8 21 21 C 1.50701 * 109.46967 * 76.14941 * 20 10 9 22 22 C 1.34510 * 125.79131 * 84.78130 * 21 20 10 23 23 C 1.41378 * 106.84528 * 179.88683 * 22 21 20 24 24 C 1.34520 * 106.83959 * 0.37091 * 23 22 21 25 25 O 1.34301 * 125.78840 * 265.08367 * 21 20 10 26 26 C 1.38264 * 120.11407 * 0.25831 * 8 7 6 27 27 C 1.38149 * 120.05281 * 359.44906 * 26 8 7 28 28 H 4.38441 * 5.44465 * 180.02562 * 4 1 2 29 29 H 1.08995 * 109.47191 * 23.04890 * 3 2 1 30 30 H 1.09006 * 109.46813 * 263.04972 * 3 2 1 31 31 H 1.07997 * 120.03126 * 0.02562 * 6 5 4 32 32 H 1.08001 * 119.96844 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47493 * 323.87166 * 9 8 7 34 34 H 1.09009 * 109.46781 * 203.87501 * 9 8 7 35 35 H 1.09003 * 109.46865 * 310.00377 * 11 10 9 36 36 H 1.09004 * 109.47294 * 69.99837 * 11 10 9 37 37 H 0.96997 * 119.99600 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.47126 * 196.14880 * 20 10 9 39 39 H 1.09004 * 109.47331 * 316.15140 * 20 10 9 40 40 H 1.08006 * 126.57591 * 0.02562 * 22 21 20 41 41 H 1.07999 * 126.58121 * 180.16025 * 23 22 21 42 42 H 1.07992 * 125.79173 * 179.75230 * 24 23 22 43 43 H 1.08001 * 119.97010 * 179.70209 * 26 8 7 44 44 H 1.08002 * 120.02859 * 180.25596 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0777 -0.8099 5 6 4.4691 1.2209 -0.9164 6 6 5.0001 2.2449 -1.6871 7 6 6.3700 2.3881 -1.7943 8 6 7.2115 1.5114 -1.1347 9 6 8.7055 1.6696 -1.2539 10 7 9.1716 2.6661 -0.2803 11 6 9.2026 2.1027 1.0759 12 6 9.4447 3.2064 2.0730 13 1 9.5640 4.2246 1.7331 14 6 9.5149 2.9163 3.4190 15 7 9.3701 1.6763 3.8329 16 14 9.8143 4.2845 4.6550 17 1 8.7212 5.2852 4.5602 18 1 9.8458 3.7150 6.0261 19 1 11.1134 4.9413 4.3614 20 6 10.4874 3.1974 -0.6599 21 6 10.3256 4.1775 -1.7931 22 6 10.0232 5.4822 -1.6677 23 6 9.9739 6.0188 -2.9748 24 6 10.2409 5.0080 -3.8213 25 8 10.4532 3.8952 -3.0999 26 6 6.6848 0.4864 -0.3707 27 6 5.3156 0.3427 -0.2555 28 1 -1.0501 -0.0001 0.0003 29 1 3.0098 -0.9448 -0.4023 30 1 3.0093 0.1252 1.0202 31 1 4.3432 2.9297 -2.2028 32 1 6.7838 3.1854 -2.3938 33 1 8.9566 2.0009 -2.2615 34 1 9.1891 0.7132 -1.0548 35 1 8.2486 1.6212 1.2912 36 1 10.0044 1.3676 1.1458 37 1 9.4191 1.4723 4.7799 38 1 10.9360 3.7022 0.1958 39 1 11.1323 2.3780 -0.9775 40 1 9.8532 6.0176 -0.7453 41 1 9.7593 7.0428 -3.2424 42 1 10.2780 5.0793 -4.8983 43 1 7.3443 -0.1999 0.1396 44 1 4.9046 -0.4556 0.3447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159597503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:35 Heat of formation + Delta-G solvation = 70.464151 kcal Electronic energy + Delta-G solvation = -26448.640845 eV Core-core repulsion = 22721.173496 eV Total energy + Delta-G solvation = -3727.467349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 5.59 seconds Orbital eigenvalues (eV) -42.14622 -40.00211 -37.98279 -36.25487 -33.60459 -32.68043 -32.57371 -31.07011 -30.68283 -29.61797 -27.81452 -26.96569 -25.44477 -23.77557 -22.48874 -21.47016 -21.32890 -20.42565 -19.69695 -18.57224 -18.10036 -16.97201 -16.49930 -16.01654 -15.90201 -15.72592 -15.24023 -14.81999 -14.48268 -14.23782 -14.06163 -13.92868 -13.50223 -13.07824 -12.84431 -12.70423 -12.44969 -12.38572 -12.28891 -12.00517 -11.75279 -11.36324 -11.26764 -11.05552 -10.99935 -10.79684 -10.70130 -10.58566 -10.43009 -10.28637 -9.93642 -9.52645 -9.27317 -8.63905 -8.46895 -8.08372 -7.79867 -7.36151 -6.06401 -4.07629 1.70278 1.73663 2.12118 2.16518 2.54528 3.02812 3.31712 3.36249 3.38735 3.39543 3.56162 4.06410 4.23509 4.41217 4.93003 5.02276 5.12535 5.13388 5.16733 5.20992 5.29998 5.39185 5.42128 5.43499 5.59246 5.65076 5.75820 5.84011 5.88691 6.04596 6.14629 6.18303 6.27738 6.37906 6.40255 6.54001 6.56843 6.68447 6.91001 7.04396 7.06185 7.17619 7.25527 7.28366 7.56878 7.57047 7.75067 8.00403 8.10710 8.45937 8.98906 9.56696 11.04193 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.004017 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.777865 B = 6969.171588 C = 9537.554465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.192 4.192 3 C 0.171 3.829 4 O -0.315 6.315 5 C 0.117 3.883 6 C -0.152 4.152 7 C -0.057 4.057 8 C -0.090 4.090 9 C 0.092 3.908 10 N -0.525 5.525 11 C 0.193 3.807 12 C -0.511 4.511 13 H 0.063 0.937 14 C 0.059 3.941 15 N -0.897 5.897 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.136 3.864 21 C 0.013 3.987 22 C -0.200 4.200 23 C -0.213 4.213 24 C -0.062 4.062 25 O -0.183 6.183 26 C -0.063 4.063 27 C -0.207 4.207 28 H 0.224 0.776 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.041 0.959 36 H -0.008 1.008 37 H 0.262 0.738 38 H 0.118 0.882 39 H 0.039 0.961 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.194 0.806 43 H 0.125 0.875 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 -1.426 -12.374 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.192 4.192 3 C 0.096 3.904 4 O -0.229 6.229 5 C 0.073 3.927 6 C -0.171 4.171 7 C -0.076 4.076 8 C -0.091 4.091 9 C -0.036 4.036 10 N -0.250 5.250 11 C 0.069 3.931 12 C -0.549 4.549 13 H 0.081 0.919 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.009 3.991 21 C -0.037 4.037 22 C -0.220 4.220 23 C -0.232 4.232 24 C -0.129 4.129 25 O -0.079 6.079 26 C -0.082 4.082 27 C -0.225 4.225 28 H 0.240 0.760 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.010 0.990 37 H 0.071 0.929 38 H 0.136 0.864 39 H 0.057 0.943 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.211 0.789 43 H 0.143 0.857 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.730 -1.342 -12.380 14.657 hybrid contribution 0.419 0.203 1.013 1.115 sum -7.312 -1.139 -11.367 13.564 Atomic orbital electron populations 1.24965 0.95818 0.98386 0.99515 1.22405 0.93654 1.01843 1.01306 1.19257 0.84638 0.90374 0.96108 1.86054 1.20097 1.49846 1.66951 1.18863 0.81021 0.95910 0.96949 1.20302 0.95157 0.98864 1.02786 1.20743 0.91558 0.97351 0.97939 1.19685 0.95619 0.95514 0.98260 1.21005 0.90987 0.94842 0.96730 1.62062 1.23830 1.35036 1.04078 1.19817 0.97045 0.94622 0.81657 1.21105 1.48807 0.94333 0.90691 0.91860 1.24944 0.95393 0.95511 0.98411 1.69936 1.50243 1.17973 1.15422 0.86606 0.78838 0.82119 0.80151 1.20157 1.21376 1.20216 1.20558 0.91911 0.94567 0.92096 1.22834 1.02945 0.96169 0.81776 1.21554 1.07584 0.94514 0.98335 1.21798 1.07949 1.00192 0.93261 1.23818 1.07544 0.84294 0.97274 1.84007 1.69898 1.36000 1.18041 1.20900 0.94093 0.97346 0.95826 1.21119 0.94419 1.02087 1.04922 0.75969 0.89622 0.89340 0.85741 0.85697 0.91184 0.94497 0.94064 0.98989 0.92862 0.86369 0.94332 0.83566 0.84133 0.78922 0.85723 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -2.26 13.73 -37.12 -0.51 -2.77 16 3 C 0.17 2.02 5.21 34.37 0.18 2.20 16 4 O -0.31 -4.68 10.10 -19.44 -0.20 -4.88 16 5 C 0.12 1.83 6.69 -39.22 -0.26 1.57 16 6 C -0.15 -2.39 9.99 -39.43 -0.39 -2.78 16 7 C -0.06 -0.94 9.72 -39.61 -0.38 -1.32 16 8 C -0.09 -1.57 5.03 -104.60 -0.53 -2.10 16 9 C 0.09 1.65 4.94 -4.97 -0.02 1.62 16 10 N -0.53 -10.81 4.33 -238.96 -1.03 -11.84 16 11 C 0.19 4.73 4.54 -4.98 -0.02 4.71 16 12 C -0.51 -13.69 8.23 -34.44 -0.28 -13.98 16 13 H 0.06 1.68 7.32 -52.48 -0.38 1.29 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 16 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.14 2.57 5.33 -4.98 -0.03 2.54 16 21 C 0.01 0.23 6.18 -35.63 -0.22 0.01 16 22 C -0.20 -3.33 10.81 -39.71 -0.43 -3.76 16 23 C -0.21 -2.97 10.91 -39.70 -0.43 -3.41 16 24 C -0.06 -0.81 12.09 29.42 0.36 -0.45 16 25 O -0.18 -2.92 10.19 5.70 0.06 -2.86 16 26 C -0.06 -1.07 8.44 -39.60 -0.33 -1.40 16 27 C -0.21 -3.18 9.04 -39.43 -0.36 -3.54 16 28 H 0.22 1.21 7.80 -54.09 -0.42 0.78 16 29 H 0.09 0.84 7.66 -51.93 -0.40 0.45 16 30 H 0.09 0.98 7.66 -51.93 -0.40 0.58 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.07 1.18 6.91 -51.93 -0.36 0.82 16 34 H 0.04 0.65 7.89 -51.92 -0.41 0.24 16 35 H 0.04 1.09 6.41 -51.93 -0.33 0.75 16 36 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.12 2.37 6.58 -51.93 -0.34 2.03 16 39 H 0.04 0.69 7.99 -51.93 -0.42 0.27 16 40 H 0.15 2.44 8.06 -52.48 -0.42 2.02 16 41 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.19 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.12 2.08 8.02 -52.49 -0.42 1.66 16 44 H 0.12 1.59 6.30 -52.49 -0.33 1.26 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -31.11 381.60 -8.79 -39.90 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.88 Total: 5.13 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.20 Total: -22.39 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.30 Total: -36.81 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.14 Total: -7.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.11 -8.79 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159597503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.360 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.59 seconds