Wall clock time and date at job start Tue Mar 31 2020 16:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42906 * 109.46862 * 143.05267 * 3 2 1 5 5 C 1.35905 * 116.99539 * 179.97438 * 4 3 2 6 6 C 1.38731 * 120.05155 * 179.97438 * 5 4 3 7 7 C 1.38147 * 119.94045 * 180.02562 * 6 5 4 8 8 C 1.38264 * 120.05584 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.94016 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47063 * 83.87488 * 9 8 7 11 11 C 1.46896 * 111.00178 * 76.07617 * 10 9 8 12 12 C 1.50695 * 109.47274 * 190.00067 * 11 10 9 13 13 H 1.08004 * 119.99731 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00122 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00046 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99998 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47340 * 59.99592 * 16 14 12 18 18 H 1.48500 * 109.47209 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46966 * 299.99809 * 16 14 12 20 20 C 1.46898 * 110.99761 * 200.02866 * 10 9 8 21 21 C 1.50701 * 109.46967 * 76.14941 * 20 10 9 22 22 C 1.34510 * 125.79131 * 84.78130 * 21 20 10 23 23 C 1.41378 * 106.84528 * 179.88683 * 22 21 20 24 24 C 1.34520 * 106.83959 * 0.37091 * 23 22 21 25 25 O 1.34301 * 125.78840 * 265.08367 * 21 20 10 26 26 C 1.38264 * 120.11407 * 0.25831 * 8 7 6 27 27 C 1.38149 * 120.05281 * 359.44906 * 26 8 7 28 28 H 4.38441 * 5.44465 * 180.02562 * 4 1 2 29 29 H 1.08995 * 109.47191 * 23.04890 * 3 2 1 30 30 H 1.09006 * 109.46813 * 263.04972 * 3 2 1 31 31 H 1.07997 * 120.03126 * 0.02562 * 6 5 4 32 32 H 1.08001 * 119.96844 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47493 * 323.87166 * 9 8 7 34 34 H 1.09009 * 109.46781 * 203.87501 * 9 8 7 35 35 H 1.09003 * 109.46865 * 310.00377 * 11 10 9 36 36 H 1.09004 * 109.47294 * 69.99837 * 11 10 9 37 37 H 0.96997 * 119.99600 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.47126 * 196.14880 * 20 10 9 39 39 H 1.09004 * 109.47331 * 316.15140 * 20 10 9 40 40 H 1.08006 * 126.57591 * 0.02562 * 22 21 20 41 41 H 1.07999 * 126.58121 * 180.16025 * 23 22 21 42 42 H 1.07992 * 125.79173 * 179.75230 * 24 23 22 43 43 H 1.08001 * 119.97010 * 179.70209 * 26 8 7 44 44 H 1.08002 * 120.02859 * 180.25596 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0777 -0.8099 5 6 4.4691 1.2209 -0.9164 6 6 5.0001 2.2449 -1.6871 7 6 6.3700 2.3881 -1.7943 8 6 7.2115 1.5114 -1.1347 9 6 8.7055 1.6696 -1.2539 10 7 9.1716 2.6661 -0.2803 11 6 9.2026 2.1027 1.0759 12 6 9.4447 3.2064 2.0730 13 1 9.5640 4.2246 1.7331 14 6 9.5149 2.9163 3.4190 15 7 9.3701 1.6763 3.8329 16 14 9.8143 4.2845 4.6550 17 1 8.7212 5.2852 4.5602 18 1 9.8458 3.7150 6.0261 19 1 11.1134 4.9413 4.3614 20 6 10.4874 3.1974 -0.6599 21 6 10.3256 4.1775 -1.7931 22 6 10.0232 5.4822 -1.6677 23 6 9.9739 6.0188 -2.9748 24 6 10.2409 5.0080 -3.8213 25 8 10.4532 3.8952 -3.0999 26 6 6.6848 0.4864 -0.3707 27 6 5.3156 0.3427 -0.2555 28 1 -1.0501 -0.0001 0.0003 29 1 3.0098 -0.9448 -0.4023 30 1 3.0093 0.1252 1.0202 31 1 4.3432 2.9297 -2.2028 32 1 6.7838 3.1854 -2.3938 33 1 8.9566 2.0009 -2.2615 34 1 9.1891 0.7132 -1.0548 35 1 8.2486 1.6212 1.2912 36 1 10.0044 1.3676 1.1458 37 1 9.4191 1.4723 4.7799 38 1 10.9360 3.7022 0.1958 39 1 11.1323 2.3780 -0.9775 40 1 9.8532 6.0176 -0.7453 41 1 9.7593 7.0428 -3.2424 42 1 10.2780 5.0793 -4.8983 43 1 7.3443 -0.1999 0.1396 44 1 4.9046 -0.4556 0.3447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159597503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:31 Heat of formation + Delta-G solvation = 53.709212 kcal Electronic energy + Delta-G solvation = -26449.367394 eV Core-core repulsion = 22721.173496 eV Total energy + Delta-G solvation = -3728.193897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -43.34342 -41.19109 -39.31558 -37.72680 -34.73687 -34.42714 -33.80035 -32.32831 -31.94632 -31.08188 -29.10054 -28.44032 -26.76422 -25.53373 -23.72060 -23.02054 -22.53950 -21.75078 -21.05948 -19.40559 -19.25050 -18.52675 -18.14484 -17.25663 -17.03615 -16.88000 -16.61116 -16.51267 -15.97384 -15.57452 -15.43698 -15.18159 -14.84260 -14.36545 -14.33308 -13.96397 -13.76921 -13.61934 -13.55313 -13.48531 -13.23234 -12.99110 -12.76065 -12.60519 -12.52811 -12.31814 -12.21674 -11.97843 -11.82157 -11.50962 -11.27280 -11.14445 -10.71289 -10.57795 -9.89624 -9.32715 -9.10190 -8.98609 -8.17173 -6.25362 0.44046 0.44552 0.93216 1.28170 1.42236 1.44401 1.51691 1.74778 1.83898 2.20239 2.42022 2.62828 2.77588 3.16501 3.42537 3.54724 3.84607 3.90377 3.92876 4.04282 4.13481 4.22560 4.26643 4.28763 4.33411 4.45607 4.53199 4.59025 4.71147 4.75361 4.79785 4.93665 5.02933 5.10737 5.17306 5.21846 5.25718 5.32396 5.35756 5.41246 5.65691 5.74577 5.77401 5.81217 6.07246 6.28153 6.36035 6.39568 6.51703 6.59367 6.88890 7.43256 8.93209 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.004017 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.777865 B = 6969.171588 C = 9537.554465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.249 4.249 3 C 0.165 3.835 4 O -0.325 6.325 5 C 0.116 3.884 6 C -0.157 4.157 7 C -0.060 4.060 8 C -0.109 4.109 9 C 0.098 3.902 10 N -0.530 5.530 11 C 0.211 3.789 12 C -0.522 4.522 13 H 0.061 0.939 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.267 1.267 20 C 0.141 3.859 21 C -0.010 4.010 22 C -0.209 4.209 23 C -0.223 4.223 24 C -0.042 4.042 25 O -0.192 6.192 26 C -0.079 4.079 27 C -0.208 4.208 28 H 0.262 0.738 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.033 0.967 35 H 0.020 0.980 36 H -0.034 1.034 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.137 0.863 41 H 0.168 0.832 42 H 0.241 0.759 43 H 0.117 0.883 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -0.176 -13.803 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.249 4.249 3 C 0.091 3.909 4 O -0.240 6.240 5 C 0.072 3.928 6 C -0.175 4.175 7 C -0.078 4.078 8 C -0.110 4.110 9 C -0.029 4.029 10 N -0.254 5.254 11 C 0.086 3.914 12 C -0.560 4.560 13 H 0.080 0.920 14 C -0.189 4.189 15 N -0.570 5.570 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.191 1.191 20 C 0.013 3.987 21 C -0.060 4.060 22 C -0.229 4.229 23 C -0.242 4.242 24 C -0.109 4.109 25 O -0.089 6.089 26 C -0.097 4.097 27 C -0.226 4.226 28 H 0.278 0.722 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.161 0.839 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.038 0.962 36 H -0.016 1.016 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.155 0.845 41 H 0.185 0.815 42 H 0.257 0.743 43 H 0.135 0.865 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.074 -0.087 -13.826 16.538 hybrid contribution 0.724 -0.188 1.358 1.550 sum -8.350 -0.275 -12.468 15.008 Atomic orbital electron populations 1.25939 0.96666 0.95836 0.97000 1.22716 0.94304 1.04228 1.03673 1.19439 0.85355 0.90191 0.95921 1.86035 1.19342 1.51133 1.67499 1.18975 0.81611 0.95708 0.96544 1.20542 0.95133 0.99143 1.02707 1.20829 0.91861 0.97253 0.97906 1.19739 0.95378 0.96461 0.99443 1.20981 0.91522 0.93969 0.96425 1.61987 1.25025 1.35502 1.02884 1.19412 0.94745 0.93408 0.83863 1.21411 1.48394 0.94728 0.91511 0.92039 1.25752 0.95171 0.97704 1.00303 1.70057 1.51276 1.19833 1.15786 0.85599 0.79038 0.79263 0.77723 1.19852 1.20987 1.19140 1.20343 0.90975 0.94902 0.92441 1.22345 1.05605 0.95889 0.82182 1.21716 1.07136 0.94507 0.99531 1.22093 1.08423 1.01859 0.91856 1.24759 1.04370 0.82841 0.98950 1.83994 1.70152 1.37355 1.17400 1.20968 0.94909 0.97588 0.96265 1.21333 0.93747 1.02664 1.04864 0.72235 0.87996 0.89130 0.83949 0.84895 0.89912 0.94871 0.96199 1.01590 0.92816 0.88378 0.93904 0.84511 0.81455 0.74305 0.86468 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 19.25 74.32 1.43 -0.88 16 2 C -0.25 -5.57 13.73 31.13 0.43 -5.14 16 3 C 0.16 3.80 5.21 70.18 0.37 4.17 16 4 O -0.33 -9.47 10.10 -92.48 -0.93 -10.40 16 5 C 0.12 3.61 6.69 22.51 0.15 3.76 16 6 C -0.16 -4.80 9.99 22.37 0.22 -4.58 16 7 C -0.06 -1.95 9.72 22.25 0.22 -1.74 16 8 C -0.11 -3.91 5.03 -19.85 -0.10 -4.01 16 9 C 0.10 3.62 4.94 85.56 0.42 4.05 16 10 N -0.53 -22.59 4.33 -909.93 -3.94 -26.53 16 11 C 0.21 10.88 4.54 85.56 0.39 11.27 16 12 C -0.52 -28.87 8.23 25.60 0.21 -28.66 16 13 H 0.06 3.35 7.32 -2.91 -0.02 3.33 16 14 C 0.01 0.52 5.46 84.65 0.46 0.98 16 15 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 16 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.14 5.49 5.33 85.56 0.46 5.95 16 21 C -0.01 -0.35 6.18 24.83 0.15 -0.19 16 22 C -0.21 -6.84 10.81 22.19 0.24 -6.60 16 23 C -0.22 -5.67 10.91 22.19 0.24 -5.43 16 24 C -0.04 -0.97 12.09 66.97 0.81 -0.16 16 25 O -0.19 -5.83 10.19 -2.53 -0.03 -5.85 16 26 C -0.08 -2.76 8.44 22.25 0.19 -2.57 16 27 C -0.21 -6.43 9.04 22.37 0.20 -6.23 16 28 H 0.26 1.80 7.80 -4.41 -0.03 1.77 16 29 H 0.10 1.94 7.66 -2.39 -0.02 1.92 16 30 H 0.09 1.99 7.66 -2.38 -0.02 1.97 16 31 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 32 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.08 2.80 6.91 -2.39 -0.02 2.78 16 34 H 0.03 1.23 7.89 -2.38 -0.02 1.21 16 35 H 0.02 1.11 6.41 -2.39 -0.02 1.09 16 36 H -0.03 -1.86 8.12 -2.38 -0.02 -1.88 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.10 4.15 6.58 -2.39 -0.02 4.14 16 39 H 0.04 1.59 7.99 -2.39 -0.02 1.57 16 40 H 0.14 4.64 8.06 -2.91 -0.02 4.61 16 41 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.24 3.01 8.06 -2.91 -0.02 2.98 16 43 H 0.12 4.18 8.02 -2.91 -0.02 4.15 16 44 H 0.15 3.71 6.30 -2.91 -0.02 3.69 16 Total: -1.00 -68.62 381.60 4.90 -63.72 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.99 Total: 23.52 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 6.49 Total: -36.02 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.65 Total: -80.94 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.96 Total: -16.25 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.62 4.90 -63.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159597503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.429 kcal (2) G-P(sol) polarization free energy of solvation -68.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds