Wall clock time and date at job start Tue Mar 31 2020 16:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47571 * 2 1 4 4 O 1.42902 * 109.47343 * 239.99681 * 2 1 3 5 5 C 1.50699 * 109.47195 * 119.99997 * 2 1 3 6 6 C 1.38241 * 120.00150 * 264.99839 * 5 2 1 7 7 C 1.38226 * 120.00124 * 179.97438 * 6 5 2 8 8 C 1.38235 * 120.00444 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00595 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46913 * 89.99826 * 9 8 7 11 11 C 1.34780 * 119.99949 * 180.02562 * 10 9 8 12 12 O 1.21549 * 119.99653 * 0.02562 * 11 10 9 13 13 C 1.47882 * 119.99923 * 179.97438 * 11 10 9 14 14 C 1.39917 * 120.02536 * 359.97438 * 13 11 10 15 15 C 1.38332 * 120.35896 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.40966 * 359.97438 * 15 14 13 17 17 C 1.40742 * 120.04148 * 0.02562 * 16 15 14 18 18 C 1.41438 * 120.17962 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99445 * 335.20844 * 18 17 16 20 20 C 1.39934 * 120.00358 * 155.21234 * 18 17 16 21 21 N 1.30832 * 119.99780 * 342.28511 * 20 18 17 22 22 Si 1.86793 * 120.00293 * 162.28347 * 20 18 17 23 23 H 1.48505 * 109.46969 * 90.00053 * 22 20 18 24 24 H 1.48496 * 109.47429 * 209.99807 * 22 20 18 25 25 H 1.48503 * 109.47001 * 330.00084 * 22 20 18 26 26 C 1.38994 * 120.02734 * 180.02562 * 13 11 10 27 27 C 1.38243 * 119.99569 * 0.27610 * 8 7 6 28 28 C 1.38235 * 119.99950 * 359.51114 * 27 8 7 29 29 H 1.08999 * 109.47014 * 300.00078 * 1 2 3 30 30 H 1.08994 * 109.47139 * 60.00354 * 1 2 3 31 31 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 32 32 H 0.96707 * 114.00000 * 300.00196 * 4 2 1 33 33 H 1.07995 * 119.99854 * 359.97438 * 6 5 2 34 34 H 1.08004 * 120.00140 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46724 * 330.00543 * 9 8 7 36 36 H 1.08993 * 109.47380 * 210.00241 * 9 8 7 37 37 H 0.97004 * 119.99742 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.82372 * 0.04089 * 14 13 11 39 39 H 1.07999 * 119.79920 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.97665 * 180.02562 * 16 15 14 41 41 H 0.96997 * 120.00049 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.19649 * 0.25919 * 26 13 11 43 43 H 1.08003 * 119.99963 * 179.72787 * 27 8 7 44 44 H 1.07993 * 119.99749 * 180.27484 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2304 6 6 2.3612 0.0140 2.3610 7 6 2.8214 -0.6377 3.4898 8 6 2.9525 -2.0138 3.4884 9 6 3.4537 -2.7243 4.7193 10 7 2.3185 -3.0785 5.5749 11 6 2.5279 -3.7250 6.7389 12 8 3.6587 -4.0136 7.0788 13 6 1.3821 -4.0820 7.6029 14 6 0.0805 -3.7485 7.2128 15 6 -0.9964 -4.0787 8.0160 16 6 -0.8000 -4.7398 9.2084 17 6 0.5021 -5.0835 9.6174 18 6 0.7070 -5.7628 10.8410 19 1 -0.0196 -5.6754 11.6353 20 6 1.8510 -6.5480 11.0223 21 7 2.5462 -6.9403 9.9857 22 14 2.3855 -7.0362 12.7443 23 1 1.7455 -8.3240 13.1148 24 1 3.8621 -7.1891 12.7796 25 1 1.9736 -5.9836 13.7074 26 6 1.5974 -4.7482 8.8037 27 6 2.6286 -2.7377 2.3561 28 6 2.1641 -2.0865 1.2287 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7210 -1.5953 -1.2328 33 1 2.2584 1.0891 2.3623 34 1 3.0787 -0.0717 4.3729 35 1 4.1307 -2.0687 5.2668 36 1 3.9838 -3.6302 4.4253 37 1 1.4162 -2.8478 5.3037 38 1 -0.0845 -3.2307 6.2795 39 1 -1.9972 -3.8165 7.7062 40 1 -1.6458 -4.9945 9.8298 41 1 3.3389 -7.4849 10.1114 42 1 2.6009 -5.0031 9.1111 43 1 2.7351 -3.8125 2.3535 44 1 1.9069 -2.6525 0.3457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171128346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:23 Heat of formation + Delta-G solvation = -55.145560 kcal Electronic energy + Delta-G solvation = -25667.381138 eV Core-core repulsion = 21934.466943 eV Total energy + Delta-G solvation = -3732.914194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.16868 -39.11937 -37.55350 -36.94535 -34.56430 -33.73635 -32.29066 -31.17319 -30.54003 -29.61051 -29.41043 -26.34594 -25.23809 -23.52918 -22.91304 -22.11871 -21.02913 -20.77959 -19.57054 -18.00031 -17.70193 -16.45446 -16.31155 -15.58863 -15.45660 -15.30955 -14.94967 -14.89288 -14.58232 -14.15762 -13.94869 -13.76853 -13.61048 -13.48890 -13.20394 -12.69708 -12.51107 -12.49326 -12.34012 -12.29219 -11.86307 -11.66137 -11.37005 -11.19173 -11.14507 -11.07093 -10.76992 -10.52896 -10.50212 -10.06372 -9.70746 -9.24922 -9.21180 -9.17157 -8.76283 -8.69990 -7.64496 -7.53512 -6.81407 -4.42567 0.95573 1.15952 2.19385 2.80084 3.07009 3.09773 3.15445 3.31654 3.84777 3.91054 3.92813 4.03372 4.23509 4.50910 4.62198 4.62864 4.68039 4.78768 4.82446 5.16282 5.18614 5.30915 5.49012 5.51836 5.56569 5.60087 5.66456 5.74068 5.84440 5.91698 6.06802 6.12922 6.25673 6.26001 6.41822 6.70253 6.70614 6.80958 6.97327 7.00181 7.17802 7.19716 7.36625 7.68575 7.74288 7.90946 8.07426 8.17537 8.49011 8.78880 8.81943 8.92394 10.13467 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.002230 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.686179 B =12553.243816 C =13183.437120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.143 3.857 3 H 0.107 0.893 4 O -0.558 6.558 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.097 4.097 8 C -0.099 4.099 9 C 0.161 3.839 10 N -0.733 5.733 11 C 0.564 3.436 12 O -0.546 6.546 13 C -0.127 4.127 14 C -0.218 4.218 15 C -0.098 4.098 16 C -0.212 4.212 17 C 0.098 3.902 18 C -0.459 4.459 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.092 4.092 27 C -0.096 4.096 28 C -0.115 4.115 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.374 0.626 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.285 0.715 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 10.789 -16.810 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 H 0.125 0.875 4 O -0.365 6.365 5 C -0.116 4.116 6 C -0.132 4.132 7 C -0.115 4.115 8 C -0.100 4.100 9 C 0.037 3.963 10 N -0.387 5.387 11 C 0.355 3.645 12 O -0.424 6.424 13 C -0.131 4.131 14 C -0.238 4.238 15 C -0.116 4.116 16 C -0.232 4.232 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.184 1.184 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.133 4.133 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.223 0.777 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.422 10.999 -16.740 20.035 hybrid contribution -0.486 -0.745 0.678 1.118 sum -0.907 10.255 -16.063 19.079 Atomic orbital electron populations 1.22490 0.95262 1.03059 1.03030 1.20815 0.93105 0.95939 0.81707 0.87547 1.86621 1.77305 1.29267 1.43265 1.20577 1.00099 0.94473 0.96415 1.20935 0.99673 0.99799 0.92748 1.21132 0.98256 0.93891 0.98246 1.20012 1.00539 0.93951 0.95466 1.20100 0.89279 0.99032 0.87859 1.46005 1.09656 1.61356 1.21711 1.18877 0.89533 0.75987 0.80143 1.90700 1.24511 1.54129 1.73040 1.19449 0.91489 1.05011 0.97116 1.20331 0.92191 1.10512 1.00746 1.20434 0.96467 0.99366 0.95333 1.21098 0.96285 1.08032 0.97744 1.17602 0.90380 0.89901 0.92537 1.19576 1.05063 1.24578 0.99616 0.90077 1.25970 0.95460 0.94388 0.98807 1.69791 1.14280 1.25151 1.31520 0.86287 0.78472 0.79587 0.82291 1.19434 1.19941 1.18371 1.21627 1.00401 0.96412 0.92746 1.21110 0.97720 1.00162 0.92419 1.20802 1.00544 0.93665 0.98315 0.91167 0.91428 0.92000 0.77730 0.85814 0.85522 0.90940 0.90918 0.76459 0.89319 0.88925 0.88610 0.90422 0.84880 0.85526 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.52 37.16 0.35 -0.75 16 2 C 0.14 1.05 3.83 -27.88 -0.11 0.94 16 3 H 0.11 0.73 8.05 -51.93 -0.42 0.31 16 4 O -0.56 -4.54 13.14 -35.23 -0.46 -5.00 16 5 C -0.12 -1.00 5.00 -104.62 -0.52 -1.52 16 6 C -0.11 -1.02 9.68 -39.58 -0.38 -1.40 16 7 C -0.10 -0.99 9.70 -39.59 -0.38 -1.38 16 8 C -0.10 -1.13 5.25 -104.62 -0.55 -1.68 16 9 C 0.16 2.24 5.80 -5.19 -0.03 2.21 16 10 N -0.73 -12.09 5.50 -62.42 -0.34 -12.43 16 11 C 0.56 12.28 7.77 -12.31 -0.10 12.18 16 12 O -0.55 -13.65 16.33 5.32 0.09 -13.56 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.62 16 14 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 15 C -0.10 -2.08 10.01 -39.72 -0.40 -2.47 16 16 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 17 C 0.10 2.60 5.57 -106.88 -0.60 2.00 16 18 C -0.46 -12.04 9.05 -37.73 -0.34 -12.38 16 19 H 0.08 2.01 7.91 -52.48 -0.41 1.60 16 20 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 21 N -0.78 -20.73 10.97 55.55 0.61 -20.12 16 22 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 26 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 27 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 28 C -0.12 -1.02 9.33 -39.58 -0.37 -1.39 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.37 1.87 7.39 45.56 0.34 2.21 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 36 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.40 5.90 6.48 -40.82 -0.26 5.63 16 38 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 42 H 0.13 3.84 5.77 -52.49 -0.30 3.53 16 43 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 44 H 0.12 0.77 6.61 -52.49 -0.35 0.42 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -31.06 373.41 -10.19 -41.26 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.10 Total: 12.48 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -5.58 Total: -21.95 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.27 Total: -32.55 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.38 Total: -18.56 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.06 -10.19 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171128346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.889 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds