Wall clock time and date at job start Tue Mar 31 2020 16:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47571 * 2 1 4 4 O 1.42902 * 109.47343 * 239.99681 * 2 1 3 5 5 C 1.50699 * 109.47195 * 119.99997 * 2 1 3 6 6 C 1.38241 * 120.00150 * 264.99839 * 5 2 1 7 7 C 1.38226 * 120.00124 * 179.97438 * 6 5 2 8 8 C 1.38235 * 120.00444 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00595 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46913 * 89.99826 * 9 8 7 11 11 C 1.34780 * 119.99949 * 180.02562 * 10 9 8 12 12 O 1.21549 * 119.99653 * 0.02562 * 11 10 9 13 13 C 1.47882 * 119.99923 * 179.97438 * 11 10 9 14 14 C 1.39917 * 120.02536 * 359.97438 * 13 11 10 15 15 C 1.38332 * 120.35896 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.40966 * 359.97438 * 15 14 13 17 17 C 1.40742 * 120.04148 * 0.02562 * 16 15 14 18 18 C 1.41438 * 120.17962 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99445 * 335.20844 * 18 17 16 20 20 C 1.39934 * 120.00358 * 155.21234 * 18 17 16 21 21 N 1.30832 * 119.99780 * 342.28511 * 20 18 17 22 22 Si 1.86793 * 120.00293 * 162.28347 * 20 18 17 23 23 H 1.48505 * 109.46969 * 90.00053 * 22 20 18 24 24 H 1.48496 * 109.47429 * 209.99807 * 22 20 18 25 25 H 1.48503 * 109.47001 * 330.00084 * 22 20 18 26 26 C 1.38994 * 120.02734 * 180.02562 * 13 11 10 27 27 C 1.38243 * 119.99569 * 0.27610 * 8 7 6 28 28 C 1.38235 * 119.99950 * 359.51114 * 27 8 7 29 29 H 1.08999 * 109.47014 * 300.00078 * 1 2 3 30 30 H 1.08994 * 109.47139 * 60.00354 * 1 2 3 31 31 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 32 32 H 0.96707 * 114.00000 * 300.00196 * 4 2 1 33 33 H 1.07995 * 119.99854 * 359.97438 * 6 5 2 34 34 H 1.08004 * 120.00140 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46724 * 330.00543 * 9 8 7 36 36 H 1.08993 * 109.47380 * 210.00241 * 9 8 7 37 37 H 0.97004 * 119.99742 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.82372 * 0.04089 * 14 13 11 39 39 H 1.07999 * 119.79920 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.97665 * 180.02562 * 16 15 14 41 41 H 0.96997 * 120.00049 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.19649 * 0.25919 * 26 13 11 43 43 H 1.08003 * 119.99963 * 179.72787 * 27 8 7 44 44 H 1.07993 * 119.99749 * 180.27484 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2304 6 6 2.3612 0.0140 2.3610 7 6 2.8214 -0.6377 3.4898 8 6 2.9525 -2.0138 3.4884 9 6 3.4537 -2.7243 4.7193 10 7 2.3185 -3.0785 5.5749 11 6 2.5279 -3.7250 6.7389 12 8 3.6587 -4.0136 7.0788 13 6 1.3821 -4.0820 7.6029 14 6 0.0805 -3.7485 7.2128 15 6 -0.9964 -4.0787 8.0160 16 6 -0.8000 -4.7398 9.2084 17 6 0.5021 -5.0835 9.6174 18 6 0.7070 -5.7628 10.8410 19 1 -0.0196 -5.6754 11.6353 20 6 1.8510 -6.5480 11.0223 21 7 2.5462 -6.9403 9.9857 22 14 2.3855 -7.0362 12.7443 23 1 1.7455 -8.3240 13.1148 24 1 3.8621 -7.1891 12.7796 25 1 1.9736 -5.9836 13.7074 26 6 1.5974 -4.7482 8.8037 27 6 2.6286 -2.7377 2.3561 28 6 2.1641 -2.0865 1.2287 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7210 -1.5953 -1.2328 33 1 2.2584 1.0891 2.3623 34 1 3.0787 -0.0717 4.3729 35 1 4.1307 -2.0687 5.2668 36 1 3.9838 -3.6302 4.4253 37 1 1.4162 -2.8478 5.3037 38 1 -0.0845 -3.2307 6.2795 39 1 -1.9972 -3.8165 7.7062 40 1 -1.6458 -4.9945 9.8298 41 1 3.3389 -7.4849 10.1114 42 1 2.6009 -5.0031 9.1111 43 1 2.7351 -3.8125 2.3535 44 1 1.9069 -2.6525 0.3457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171128346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:22 Heat of formation + Delta-G solvation = -74.479772 kcal Electronic energy + Delta-G solvation = -25668.219532 eV Core-core repulsion = 21934.466943 eV Total energy + Delta-G solvation = -3733.752589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15734 -40.52869 -38.87434 -38.12844 -35.93302 -35.53593 -33.23833 -32.09329 -31.83218 -31.29617 -30.55000 -27.56316 -26.93940 -24.48035 -23.80432 -23.39157 -22.77662 -21.65000 -21.22914 -19.58899 -18.55471 -18.01095 -17.21116 -17.05065 -16.85068 -16.50164 -16.09794 -15.99950 -15.93361 -15.30687 -15.18764 -15.06805 -14.61496 -14.43282 -14.36490 -14.26748 -14.09147 -13.71450 -13.43715 -13.08288 -12.94071 -12.87905 -12.78410 -12.65350 -12.55063 -12.20608 -12.04420 -11.93338 -11.79600 -11.52088 -11.13589 -11.07019 -10.87268 -10.20970 -9.89049 -9.64969 -9.48137 -9.39597 -8.67434 -6.38722 0.17415 0.36400 0.43625 0.99985 1.36041 1.45927 1.52358 2.07895 2.18877 2.23097 2.77664 2.84048 3.50106 3.57029 3.68802 3.75263 3.82553 4.02612 4.05997 4.16499 4.26734 4.40637 4.40954 4.48191 4.57894 4.63494 4.68472 4.83963 4.90563 4.96112 4.99130 5.08090 5.12012 5.17956 5.25724 5.29824 5.37910 5.39319 5.51084 5.57831 5.61358 5.85358 5.91491 5.98443 6.04349 6.27635 6.49042 6.65999 6.76418 6.87151 6.93711 7.26886 8.29570 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.002230 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.686179 B =12553.243816 C =13183.437120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.145 3.855 3 H 0.112 0.888 4 O -0.574 6.574 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.112 4.112 9 C 0.163 3.837 10 N -0.708 5.708 11 C 0.560 3.440 12 O -0.589 6.589 13 C -0.138 4.138 14 C -0.197 4.197 15 C -0.095 4.095 16 C -0.216 4.216 17 C 0.066 3.934 18 C -0.496 4.496 19 H 0.085 0.915 20 C 0.028 3.972 21 N -0.825 5.825 22 Si 0.982 3.018 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.255 1.255 26 C -0.131 4.131 27 C -0.104 4.104 28 C -0.117 4.117 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.387 0.613 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.411 0.589 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 12.380 -18.815 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.086 3.914 3 H 0.130 0.870 4 O -0.382 6.382 5 C -0.113 4.113 6 C -0.133 4.133 7 C -0.122 4.122 8 C -0.113 4.113 9 C 0.040 3.960 10 N -0.361 5.361 11 C 0.351 3.649 12 O -0.470 6.470 13 C -0.141 4.141 14 C -0.217 4.217 15 C -0.113 4.113 16 C -0.236 4.236 17 C 0.064 3.936 18 C -0.526 4.526 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.178 1.178 26 C -0.151 4.151 27 C -0.123 4.123 28 C -0.135 4.135 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.237 0.763 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.249 0.751 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.147 0.853 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.406 12.613 -18.793 22.761 hybrid contribution 0.016 -1.097 1.048 1.517 sum -2.391 11.517 -17.745 21.289 Atomic orbital electron populations 1.22449 0.94218 1.03340 1.03413 1.20862 0.93809 0.95910 0.80776 0.87048 1.86602 1.77678 1.30436 1.43466 1.20852 0.99024 0.94554 0.96837 1.21200 0.98898 1.01009 0.92232 1.21239 0.98433 0.93449 0.99087 1.19765 1.02520 0.94394 0.94597 1.20160 0.88343 0.98943 0.88564 1.45811 1.11161 1.59077 1.20019 1.18762 0.88432 0.76421 0.81332 1.90675 1.25870 1.56146 1.74331 1.19752 0.93535 1.04339 0.96486 1.20818 0.90706 1.08343 1.01815 1.20922 0.98717 0.97699 0.93978 1.21411 0.95528 1.07692 0.98974 1.17957 0.91611 0.90842 0.93185 1.19856 1.06434 1.26020 1.00261 0.89726 1.26870 0.95064 0.93921 1.02782 1.69892 1.14984 1.26440 1.33791 0.85199 0.77912 0.79612 0.77008 1.18113 1.19771 1.17816 1.21436 0.99126 0.99534 0.95040 1.21216 0.97973 1.00422 0.92647 1.21083 0.99731 0.94063 0.98586 0.90947 0.90895 0.91783 0.76299 0.83666 0.85153 0.91419 0.91687 0.75084 0.84895 0.84342 0.87269 0.90298 0.88364 0.85350 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.52 71.98 0.69 -0.93 16 2 C 0.15 1.69 3.83 29.85 0.11 1.80 16 3 H 0.11 1.18 8.05 -2.39 -0.02 1.17 16 4 O -0.57 -7.71 13.14 -148.98 -1.96 -9.66 16 5 C -0.11 -1.62 5.00 -19.86 -0.10 -1.72 16 6 C -0.12 -1.76 9.68 22.27 0.22 -1.54 16 7 C -0.10 -1.93 9.70 22.27 0.22 -1.71 16 8 C -0.11 -2.39 5.25 -19.86 -0.10 -2.50 16 9 C 0.16 4.50 5.80 85.63 0.50 4.99 16 10 N -0.71 -22.74 5.50 -469.67 -2.58 -25.32 16 11 C 0.56 24.84 7.77 86.80 0.67 25.52 16 12 O -0.59 -30.89 16.33 -3.87 -0.06 -30.95 16 13 C -0.14 -6.56 5.87 -20.14 -0.12 -6.68 16 14 C -0.20 -7.75 9.55 22.70 0.22 -7.54 16 15 C -0.10 -3.76 10.01 22.18 0.22 -3.54 16 16 C -0.22 -10.09 9.78 22.77 0.22 -9.87 16 17 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 18 C -0.50 -27.12 9.05 23.47 0.21 -26.91 16 19 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 20 C 0.03 1.50 5.14 85.25 0.44 1.94 16 21 N -0.83 -46.38 10.97 21.82 0.24 -46.14 16 22 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 26 C -0.13 -7.32 8.23 23.01 0.19 -7.13 16 27 C -0.10 -1.96 9.70 22.27 0.22 -1.74 16 28 C -0.12 -1.75 9.33 22.27 0.21 -1.54 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.39 2.72 7.39 -74.05 -0.55 2.17 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 36 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 37 H 0.41 11.11 6.48 -92.71 -0.60 10.50 16 38 H 0.13 4.01 6.38 -2.91 -0.02 3.99 16 39 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 41 H 0.29 14.83 8.30 -92.71 -0.77 14.06 16 42 H 0.10 6.12 5.77 -2.91 -0.02 6.11 16 43 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.14 1.37 6.61 -2.91 -0.02 1.35 16 Total: -1.00 -71.60 373.41 1.45 -70.16 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.11 Total: 35.70 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 3.89 Total: -35.58 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -2.34 Total: -71.46 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -2.02 Total: -40.62 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -71.60 1.45 -70.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171128346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.321 kcal (2) G-P(sol) polarization free energy of solvation -71.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds