Wall clock time and date at job start Tue Mar 31 2020 16:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47023 * 2 1 4 4 O 1.42896 * 109.47331 * 120.00455 * 2 1 3 5 5 C 1.50700 * 109.46853 * 240.00383 * 2 1 3 6 6 C 1.38237 * 120.00458 * 100.00382 * 5 2 1 7 7 C 1.38230 * 120.00059 * 180.02562 * 6 5 2 8 8 C 1.38234 * 120.00375 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.00367 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47279 * 89.99908 * 9 8 7 11 11 C 1.34777 * 120.00017 * 180.02562 * 10 9 8 12 12 O 1.21542 * 119.99838 * 359.97438 * 11 10 9 13 13 C 1.47888 * 119.99587 * 179.97438 * 11 10 9 14 14 C 1.39912 * 120.03008 * 359.97438 * 13 11 10 15 15 C 1.38329 * 120.36210 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41116 * 359.97438 * 15 14 13 17 17 C 1.40750 * 120.03993 * 0.02562 * 16 15 14 18 18 C 1.41432 * 120.17732 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99660 * 150.17685 * 18 17 16 20 20 C 1.39930 * 120.00204 * 330.18089 * 18 17 16 21 21 N 1.30824 * 120.00170 * 161.73158 * 20 18 17 22 22 Si 1.86802 * 119.99882 * 341.72549 * 20 18 17 23 23 H 1.48498 * 109.47019 * 95.41425 * 22 20 18 24 24 H 1.48493 * 109.47000 * 215.41400 * 22 20 18 25 25 H 1.48500 * 109.47040 * 335.41493 * 22 20 18 26 26 C 1.38999 * 120.02054 * 179.97438 * 13 11 10 27 27 C 1.38239 * 119.99552 * 0.25097 * 8 7 6 28 28 C 1.38234 * 120.00237 * 359.50179 * 27 8 7 29 29 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47262 * 300.00261 * 1 2 3 31 31 H 1.09008 * 109.47180 * 59.99501 * 1 2 3 32 32 H 0.96704 * 113.99923 * 59.99003 * 4 2 1 33 33 H 1.08001 * 119.99623 * 359.97438 * 6 5 2 34 34 H 1.08001 * 119.99997 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47070 * 330.00508 * 9 8 7 36 36 H 1.09003 * 109.47372 * 209.99948 * 9 8 7 37 37 H 0.96998 * 119.99441 * 0.02562 * 10 9 8 38 38 H 1.08006 * 119.81676 * 0.03857 * 14 13 11 39 39 H 1.08003 * 119.79248 * 179.97438 * 15 14 13 40 40 H 1.07993 * 119.98024 * 180.02562 * 16 15 14 41 41 H 0.96998 * 119.99940 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.20436 * 0.25466 * 26 13 11 43 43 H 1.08006 * 119.99564 * 179.72450 * 27 8 7 44 44 H 1.08003 * 120.00250 * 180.23064 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0322 -0.7103 -1.2305 6 6 2.4587 0.0195 -2.3243 7 6 2.9189 -0.6322 -3.4532 8 6 2.9532 -2.0136 -3.4882 9 6 3.4543 -2.7241 -4.7191 10 7 4.8997 -2.9354 -4.6065 11 6 5.5691 -3.5562 -5.5979 12 8 4.9737 -3.9412 -6.5851 13 6 7.0282 -3.7690 -5.4845 14 6 7.7143 -3.3256 -4.3486 15 6 9.0791 -3.5205 -4.2356 16 6 9.7785 -4.1537 -5.2393 17 6 9.1056 -4.6067 -6.3895 18 6 9.8207 -5.2576 -7.4216 19 1 9.3303 -6.0012 -8.0324 20 6 11.1636 -4.9384 -7.6513 21 7 11.9226 -5.7558 -8.3348 22 14 11.8724 -3.3449 -6.9820 23 1 12.5346 -3.6065 -5.6789 24 1 12.8669 -2.8035 -7.9428 25 1 10.7791 -2.3579 -6.7925 26 6 7.7191 -4.4097 -6.5064 27 6 2.5223 -2.7435 -2.3961 28 6 2.0669 -2.0919 -1.2653 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7209 -1.5953 1.2328 33 1 2.4315 1.0988 -2.2972 34 1 3.2517 -0.0620 -4.3079 35 1 3.2434 -2.1175 -5.5998 36 1 2.9525 -3.6872 -4.8124 37 1 5.3747 -2.6284 -3.8185 38 1 7.1752 -2.8285 -3.5556 39 1 9.5995 -3.1741 -3.3549 40 1 10.8439 -4.3026 -5.1437 41 1 12.8534 -5.5342 -8.4943 42 1 7.1944 -4.7500 -7.3868 43 1 2.5450 -3.8230 -2.4251 44 1 1.7338 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171128350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:29 Heat of formation + Delta-G solvation = -53.884036 kcal Electronic energy + Delta-G solvation = -25535.109761 eV Core-core repulsion = 21802.250270 eV Total energy + Delta-G solvation = -3732.859491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.26256 -39.34299 -37.67039 -37.20288 -34.73191 -33.70524 -32.40436 -31.26624 -30.85359 -30.14329 -29.70974 -26.50329 -25.14045 -23.68042 -23.03751 -22.49074 -20.99992 -20.66009 -20.03452 -18.17985 -17.78896 -16.49282 -16.38976 -15.91317 -15.75176 -15.45842 -15.07859 -15.00362 -14.68442 -14.31373 -14.02930 -13.79943 -13.71022 -13.63633 -13.46131 -12.77650 -12.75814 -12.61969 -12.55449 -12.41612 -12.02451 -11.85957 -11.61701 -11.47820 -11.25147 -11.05758 -10.79198 -10.56490 -10.55174 -10.02978 -9.74620 -9.53119 -9.25310 -9.23487 -8.89753 -8.88736 -7.88218 -7.77166 -7.01563 -4.56371 0.86574 1.07837 1.89727 2.50513 3.04785 3.16627 3.20863 3.25113 3.59988 3.76050 3.92325 3.99971 4.16427 4.41986 4.47695 4.51290 4.60824 4.71291 4.75046 5.07098 5.09983 5.22977 5.29840 5.34879 5.40665 5.48717 5.55019 5.62772 5.74995 5.75552 5.86702 6.01608 6.03826 6.18788 6.31772 6.37693 6.58860 6.63501 6.65350 6.69245 6.96587 7.14111 7.19762 7.39277 7.48752 7.73498 7.77797 7.99244 8.27073 8.51900 8.65845 8.71082 10.00548 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.002207 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.420744 B =12684.260603 C =13258.469226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.143 3.857 3 H 0.107 0.893 4 O -0.557 6.557 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.096 4.096 8 C -0.101 4.101 9 C 0.161 3.839 10 N -0.730 5.730 11 C 0.564 3.436 12 O -0.548 6.548 13 C -0.108 4.108 14 C -0.216 4.216 15 C -0.083 4.083 16 C -0.221 4.221 17 C 0.081 3.919 18 C -0.442 4.442 19 H 0.094 0.906 20 C 0.083 3.917 21 N -0.803 5.803 22 Si 0.911 3.089 23 H -0.269 1.269 24 H -0.289 1.289 25 H -0.244 1.244 26 C -0.136 4.136 27 C -0.096 4.096 28 C -0.115 4.115 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.374 0.626 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.402 0.598 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.286 0.714 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.280 10.994 15.085 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 H 0.125 0.875 4 O -0.363 6.363 5 C -0.114 4.114 6 C -0.130 4.130 7 C -0.115 4.115 8 C -0.102 4.102 9 C 0.037 3.963 10 N -0.384 5.384 11 C 0.354 3.646 12 O -0.426 6.426 13 C -0.111 4.111 14 C -0.236 4.236 15 C -0.101 4.101 16 C -0.241 4.241 17 C 0.078 3.922 18 C -0.470 4.470 19 H 0.112 0.888 20 C -0.136 4.136 21 N -0.427 5.427 22 Si 0.737 3.263 23 H -0.195 1.195 24 H -0.216 1.216 25 H -0.167 1.167 26 C -0.156 4.156 27 C -0.114 4.114 28 C -0.133 4.133 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.222 0.778 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.238 0.762 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.145 0.855 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.224 11.173 14.306 25.722 hybrid contribution 0.450 0.213 0.450 0.671 sum -17.774 11.386 14.755 25.754 Atomic orbital electron populations 1.22492 0.95359 1.02947 1.03004 1.20824 0.93037 0.96029 0.81749 0.87534 1.86639 1.77295 1.29221 1.43130 1.20590 0.99854 0.94421 0.96575 1.20966 0.99223 0.99842 0.93014 1.21140 0.98239 0.93824 0.98298 1.19985 1.00393 0.93911 0.95880 1.20126 0.81638 0.99886 0.94611 1.46000 1.07706 1.61766 1.22953 1.18811 0.87918 0.76166 0.81689 1.90700 1.70100 1.50836 1.30967 1.19406 0.90439 1.04108 0.97177 1.20387 0.94578 1.10277 0.98337 1.20516 0.93844 0.98173 0.97601 1.21181 0.98978 1.08443 0.95477 1.17705 0.91722 0.90400 0.92347 1.19515 0.94453 1.19163 1.13882 0.88829 1.26169 0.96310 0.98199 0.92960 1.69689 1.07618 1.34422 1.30937 0.86311 0.79289 0.82644 0.78052 1.19545 1.21647 1.16694 1.21273 0.94319 1.02105 0.97884 1.21100 0.97602 1.00181 0.92527 1.20815 1.00679 0.93646 0.98169 0.92068 0.91391 0.91260 0.77758 0.85757 0.85496 0.90785 0.90789 0.76243 0.88649 0.88272 0.87874 0.90309 0.86638 0.85522 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 9.51 37.16 0.35 -0.58 16 2 C 0.14 0.96 3.83 -27.88 -0.11 0.85 16 3 H 0.11 0.68 8.00 -51.93 -0.42 0.26 16 4 O -0.56 -4.34 13.19 -35.23 -0.46 -4.81 16 5 C -0.11 -0.90 4.97 -104.62 -0.52 -1.42 16 6 C -0.11 -0.92 9.67 -39.58 -0.38 -1.31 16 7 C -0.10 -0.90 9.70 -39.59 -0.38 -1.28 16 8 C -0.10 -1.03 5.25 -104.63 -0.55 -1.57 16 9 C 0.16 1.98 5.80 -5.19 -0.03 1.95 16 10 N -0.73 -10.79 5.50 -62.42 -0.34 -11.14 16 11 C 0.56 11.00 7.77 -12.31 -0.10 10.90 16 12 O -0.55 -12.25 16.33 5.33 0.09 -12.16 16 13 C -0.11 -2.31 5.87 -105.04 -0.62 -2.93 16 14 C -0.22 -4.19 9.55 -38.92 -0.37 -4.56 16 15 C -0.08 -1.70 10.01 -39.72 -0.40 -2.10 16 16 C -0.22 -5.16 7.17 -38.81 -0.28 -5.44 16 17 C 0.08 2.05 5.10 -106.87 -0.55 1.50 16 18 C -0.44 -11.88 9.57 -37.73 -0.36 -12.24 16 19 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 20 C 0.08 2.15 5.40 -17.35 -0.09 2.06 16 21 N -0.80 -21.12 13.93 55.55 0.77 -20.35 16 22 Si 0.91 20.35 24.52 -169.99 -4.17 16.19 16 23 H -0.27 -5.78 6.71 56.52 0.38 -5.40 16 24 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.24 -5.58 6.86 56.52 0.39 -5.20 16 26 C -0.14 -3.27 9.34 -38.44 -0.36 -3.62 16 27 C -0.10 -0.87 9.70 -39.58 -0.38 -1.26 16 28 C -0.12 -0.91 9.32 -39.58 -0.37 -1.28 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.37 1.71 7.50 45.56 0.34 2.05 16 33 H 0.12 0.78 8.04 -52.49 -0.42 0.36 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 36 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.40 5.32 6.48 -40.82 -0.26 5.06 16 38 H 0.10 1.52 6.38 -52.48 -0.33 1.18 16 39 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.10 2.38 4.72 -52.49 -0.25 2.14 16 41 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 42 H 0.12 2.83 7.64 -52.49 -0.40 2.43 16 43 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.12 0.66 6.79 -52.48 -0.36 0.30 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -30.60 368.34 -9.12 -39.72 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.07 Total: 9.32 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -5.49 Total: -22.33 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.43 Total: -31.49 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.38 Total: -16.97 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.17 Total: 16.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.60 -9.12 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171128350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.160 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds