Wall clock time and date at job start Tue Mar 31 2020 16:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47023 * 2 1 4 4 O 1.42896 * 109.47331 * 120.00455 * 2 1 3 5 5 C 1.50700 * 109.46853 * 240.00383 * 2 1 3 6 6 C 1.38237 * 120.00458 * 100.00382 * 5 2 1 7 7 C 1.38230 * 120.00059 * 180.02562 * 6 5 2 8 8 C 1.38234 * 120.00375 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.00367 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47279 * 89.99908 * 9 8 7 11 11 C 1.34777 * 120.00017 * 180.02562 * 10 9 8 12 12 O 1.21542 * 119.99838 * 359.97438 * 11 10 9 13 13 C 1.47888 * 119.99587 * 179.97438 * 11 10 9 14 14 C 1.39912 * 120.03008 * 359.97438 * 13 11 10 15 15 C 1.38329 * 120.36210 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41116 * 359.97438 * 15 14 13 17 17 C 1.40750 * 120.03993 * 0.02562 * 16 15 14 18 18 C 1.41432 * 120.17732 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99660 * 150.17685 * 18 17 16 20 20 C 1.39930 * 120.00204 * 330.18089 * 18 17 16 21 21 N 1.30824 * 120.00170 * 161.73158 * 20 18 17 22 22 Si 1.86802 * 119.99882 * 341.72549 * 20 18 17 23 23 H 1.48498 * 109.47019 * 95.41425 * 22 20 18 24 24 H 1.48493 * 109.47000 * 215.41400 * 22 20 18 25 25 H 1.48500 * 109.47040 * 335.41493 * 22 20 18 26 26 C 1.38999 * 120.02054 * 179.97438 * 13 11 10 27 27 C 1.38239 * 119.99552 * 0.25097 * 8 7 6 28 28 C 1.38234 * 120.00237 * 359.50179 * 27 8 7 29 29 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47262 * 300.00261 * 1 2 3 31 31 H 1.09008 * 109.47180 * 59.99501 * 1 2 3 32 32 H 0.96704 * 113.99923 * 59.99003 * 4 2 1 33 33 H 1.08001 * 119.99623 * 359.97438 * 6 5 2 34 34 H 1.08001 * 119.99997 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47070 * 330.00508 * 9 8 7 36 36 H 1.09003 * 109.47372 * 209.99948 * 9 8 7 37 37 H 0.96998 * 119.99441 * 0.02562 * 10 9 8 38 38 H 1.08006 * 119.81676 * 0.03857 * 14 13 11 39 39 H 1.08003 * 119.79248 * 179.97438 * 15 14 13 40 40 H 1.07993 * 119.98024 * 180.02562 * 16 15 14 41 41 H 0.96998 * 119.99940 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.20436 * 0.25466 * 26 13 11 43 43 H 1.08006 * 119.99564 * 179.72450 * 27 8 7 44 44 H 1.08003 * 120.00250 * 180.23064 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0322 -0.7103 -1.2305 6 6 2.4587 0.0195 -2.3243 7 6 2.9189 -0.6322 -3.4532 8 6 2.9532 -2.0136 -3.4882 9 6 3.4543 -2.7241 -4.7191 10 7 4.8997 -2.9354 -4.6065 11 6 5.5691 -3.5562 -5.5979 12 8 4.9737 -3.9412 -6.5851 13 6 7.0282 -3.7690 -5.4845 14 6 7.7143 -3.3256 -4.3486 15 6 9.0791 -3.5205 -4.2356 16 6 9.7785 -4.1537 -5.2393 17 6 9.1056 -4.6067 -6.3895 18 6 9.8207 -5.2576 -7.4216 19 1 9.3303 -6.0012 -8.0324 20 6 11.1636 -4.9384 -7.6513 21 7 11.9226 -5.7558 -8.3348 22 14 11.8724 -3.3449 -6.9820 23 1 12.5346 -3.6065 -5.6789 24 1 12.8669 -2.8035 -7.9428 25 1 10.7791 -2.3579 -6.7925 26 6 7.7191 -4.4097 -6.5064 27 6 2.5223 -2.7435 -2.3961 28 6 2.0669 -2.0919 -1.2653 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.7209 -1.5953 1.2328 33 1 2.4315 1.0988 -2.2972 34 1 3.2517 -0.0620 -4.3079 35 1 3.2434 -2.1175 -5.5998 36 1 2.9525 -3.6872 -4.8124 37 1 5.3747 -2.6284 -3.8185 38 1 7.1752 -2.8285 -3.5556 39 1 9.5995 -3.1741 -3.3549 40 1 10.8439 -4.3026 -5.1437 41 1 12.8534 -5.5342 -8.4943 42 1 7.1944 -4.7500 -7.3868 43 1 2.5450 -3.8230 -2.4251 44 1 1.7338 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171128350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:28 Heat of formation + Delta-G solvation = -74.115901 kcal Electronic energy + Delta-G solvation = -25535.987080 eV Core-core repulsion = 21802.250270 eV Total energy + Delta-G solvation = -3733.736810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.21807 -40.57517 -39.09443 -38.13882 -35.94282 -35.54922 -33.31670 -32.39917 -31.88921 -31.77604 -30.59891 -27.60818 -26.83378 -24.71032 -23.92178 -23.43732 -22.47465 -21.66127 -21.58917 -19.73044 -18.50985 -18.12806 -17.34419 -17.24297 -17.04708 -16.48047 -16.14971 -16.05474 -15.94901 -15.46454 -15.20131 -15.18769 -14.59602 -14.55255 -14.39283 -14.37374 -14.13066 -13.90151 -13.61892 -13.34214 -13.16189 -12.89059 -12.84901 -12.68876 -12.55156 -12.31909 -12.05989 -11.80508 -11.77334 -11.57699 -11.23599 -11.08974 -10.91641 -10.23798 -9.87865 -9.65482 -9.64141 -9.56943 -8.92342 -6.56201 0.16205 0.17943 0.44779 0.72906 1.25126 1.41098 1.48048 1.93236 2.12005 2.18326 2.64106 2.83305 3.44226 3.51658 3.58775 3.74855 3.83416 3.90979 4.06451 4.16265 4.24766 4.27029 4.39511 4.42049 4.49157 4.54575 4.67619 4.69385 4.83830 4.87588 4.90457 4.97240 4.99562 5.13045 5.14447 5.24451 5.33720 5.39506 5.41675 5.59296 5.61974 5.63461 5.70458 5.83507 5.99449 6.09188 6.28820 6.53230 6.64762 6.73255 6.77841 7.18958 8.16572 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.002207 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.420744 B =12684.260603 C =13258.469226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.144 3.856 3 H 0.109 0.891 4 O -0.574 6.574 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.104 4.104 8 C -0.112 4.112 9 C 0.162 3.838 10 N -0.706 5.706 11 C 0.563 3.437 12 O -0.585 6.585 13 C -0.113 4.113 14 C -0.183 4.183 15 C -0.082 4.082 16 C -0.224 4.224 17 C 0.065 3.935 18 C -0.487 4.487 19 H 0.050 0.950 20 C 0.045 3.955 21 N -0.848 5.848 22 Si 0.968 3.032 23 H -0.247 1.247 24 H -0.277 1.277 25 H -0.252 1.252 26 C -0.166 4.166 27 C -0.102 4.102 28 C -0.117 4.117 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.387 0.613 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.413 0.587 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.107 0.893 41 H 0.295 0.705 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.288 13.879 19.323 30.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.085 3.915 3 H 0.127 0.873 4 O -0.382 6.382 5 C -0.113 4.113 6 C -0.135 4.135 7 C -0.122 4.122 8 C -0.113 4.113 9 C 0.040 3.960 10 N -0.359 5.359 11 C 0.352 3.648 12 O -0.466 6.466 13 C -0.116 4.116 14 C -0.202 4.202 15 C -0.100 4.100 16 C -0.244 4.244 17 C 0.062 3.938 18 C -0.517 4.517 19 H 0.068 0.932 20 C -0.170 4.170 21 N -0.474 5.474 22 Si 0.790 3.210 23 H -0.171 1.171 24 H -0.204 1.204 25 H -0.175 1.175 26 C -0.187 4.187 27 C -0.121 4.121 28 C -0.135 4.135 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.251 0.749 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.150 0.850 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.255 14.061 18.591 30.233 hybrid contribution 0.484 -0.621 -0.662 1.028 sum -18.771 13.441 17.928 29.230 Atomic orbital electron populations 1.22447 0.94217 1.03376 1.03325 1.20868 0.93848 0.95893 0.80896 0.87302 1.86613 1.77704 1.30419 1.43457 1.20834 0.98976 0.94613 0.96878 1.21214 0.98694 1.00947 0.92640 1.21247 0.98488 0.93542 0.98940 1.19769 1.02040 0.94218 0.95263 1.20201 0.79779 1.00068 0.95995 1.45836 1.08825 1.59540 1.21691 1.18596 0.87331 0.76662 0.82221 1.90690 1.70541 1.52656 1.32731 1.19684 0.91802 1.03041 0.97042 1.20968 0.94555 1.06908 0.97807 1.21035 0.94263 0.96663 0.98052 1.21385 0.99460 1.08178 0.95357 1.17788 0.92170 0.90981 0.92818 1.19450 0.95780 1.20745 1.15711 0.93159 1.26906 0.96031 1.00887 0.93172 1.69721 1.08401 1.36156 1.33074 0.85464 0.78524 0.78335 0.78719 1.17127 1.20375 1.17547 1.21203 0.94434 1.04320 0.98702 1.21230 0.97658 1.00565 0.92634 1.21096 0.99975 0.93936 0.98479 0.91614 0.91021 0.90999 0.76307 0.83941 0.85132 0.91172 0.91108 0.74932 0.83738 0.83568 0.87545 0.89418 0.89155 0.85033 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.51 71.98 0.68 -0.62 16 2 C 0.14 1.48 3.83 29.85 0.11 1.60 16 3 H 0.11 1.06 8.00 -2.39 -0.02 1.04 16 4 O -0.57 -7.18 13.19 -148.98 -1.96 -9.14 16 5 C -0.11 -1.42 4.97 -19.86 -0.10 -1.52 16 6 C -0.12 -1.57 9.67 22.27 0.22 -1.35 16 7 C -0.10 -1.66 9.70 22.27 0.22 -1.44 16 8 C -0.11 -2.01 5.25 -19.87 -0.10 -2.11 16 9 C 0.16 3.74 5.80 85.63 0.50 4.24 16 10 N -0.71 -19.15 5.50 -469.66 -2.58 -21.73 16 11 C 0.56 21.45 7.77 86.80 0.67 22.12 16 12 O -0.58 -26.69 16.33 -3.85 -0.06 -26.75 16 13 C -0.11 -4.68 5.87 -20.13 -0.12 -4.79 16 14 C -0.18 -6.30 9.55 22.70 0.22 -6.08 16 15 C -0.08 -2.99 10.01 22.18 0.22 -2.77 16 16 C -0.22 -10.10 7.17 22.77 0.16 -9.94 16 17 C 0.06 3.38 5.10 -21.32 -0.11 3.27 16 18 C -0.49 -28.17 9.57 23.47 0.22 -27.94 16 19 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 20 C 0.04 2.41 5.40 85.25 0.46 2.87 16 21 N -0.85 -46.90 13.93 21.82 0.30 -46.60 16 22 Si 0.97 41.84 24.52 68.60 1.68 43.52 16 23 H -0.25 -9.68 6.71 99.48 0.67 -9.02 16 24 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 25 H -0.25 -11.08 6.86 99.48 0.68 -10.40 16 26 C -0.17 -8.33 9.34 23.01 0.21 -8.11 16 27 C -0.10 -1.59 9.70 22.27 0.22 -1.37 16 28 C -0.12 -1.46 9.32 22.27 0.21 -1.25 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.39 2.27 7.50 -74.05 -0.56 1.72 16 33 H 0.14 1.32 8.04 -2.91 -0.02 1.30 16 34 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 36 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 37 H 0.41 9.21 6.48 -92.71 -0.60 8.61 16 38 H 0.15 3.61 6.38 -2.91 -0.02 3.59 16 39 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 40 H 0.11 4.70 4.72 -2.91 -0.01 4.69 16 41 H 0.30 14.55 8.30 -92.71 -0.77 13.78 16 42 H 0.09 4.85 7.64 -2.91 -0.02 4.83 16 43 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.14 1.03 6.79 -2.91 -0.02 1.01 16 Total: -1.00 -70.82 368.34 1.10 -69.73 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.18 Total: 26.20 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.90 Total: -35.22 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -2.28 Total: -68.33 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -2.03 Total: -35.89 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.68 Total: 43.52 kcal Total: -70.82 1.10 -69.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171128350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.388 kcal (2) G-P(sol) polarization free energy of solvation -70.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds