Wall clock time and date at job start Tue Mar 31 2020 14:50:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42902 * 109.47370 * 2 1
4 4 C 1.53007 * 109.46488 * 119.99888 * 2 1 3
5 5 N 1.46497 * 109.47299 * 304.99787 * 4 2 1
6 6 C 1.34775 * 120.00208 * 180.02562 * 5 4 2
7 7 O 1.21553 * 119.99881 * 359.97438 * 6 5 4
8 8 C 1.47886 * 120.00434 * 180.02562 * 6 5 4
9 9 C 1.39925 * 120.01893 * 359.72557 * 8 6 5
10 10 C 1.38326 * 120.35297 * 179.74233 * 9 8 6
11 11 C 1.37754 * 120.41236 * 0.55685 * 10 9 8
12 12 C 1.40742 * 120.04067 * 359.69784 * 11 10 9
13 13 C 1.41438 * 120.18071 * 180.02562 * 12 11 10
14 14 H 1.08003 * 119.99836 * 24.43841 * 13 12 11
15 15 C 1.39935 * 120.00094 * 204.43980 * 13 12 11
16 16 N 1.30827 * 120.00435 * 17.88073 * 15 13 12
17 17 Si 1.86805 * 120.00044 * 197.87690 * 15 13 12
18 18 H 1.48494 * 109.46771 * 60.00123 * 17 15 13
19 19 H 1.48494 * 109.47011 * 180.02562 * 17 15 13
20 20 H 1.48504 * 109.47035 * 300.00245 * 17 15 13
21 21 C 1.38990 * 120.02925 * 179.97438 * 8 6 5
22 22 C 1.50701 * 109.47679 * 239.99812 * 2 1 3
23 23 C 1.38225 * 120.00043 * 89.99746 * 22 2 1
24 24 C 1.38241 * 120.00059 * 180.02562 * 23 22 2
25 25 C 1.38231 * 119.99684 * 359.96270 * 24 23 22
26 26 C 1.38230 * 120.00249 * 0.27478 * 25 24 23
27 27 C 1.38233 * 119.99759 * 270.03193 * 22 2 1
28 28 H 1.08999 * 109.47462 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47178 * 300.00589 * 1 2 3
30 30 H 1.09004 * 109.46641 * 60.00263 * 1 2 3
31 31 H 0.96701 * 113.99830 * 179.97438 * 3 2 1
32 32 H 1.08998 * 109.47149 * 65.00592 * 4 2 1
33 33 H 1.09001 * 109.46684 * 184.99912 * 4 2 1
34 34 H 0.96998 * 120.00216 * 0.02562 * 5 4 2
35 35 H 1.07997 * 119.82221 * 359.97438 * 9 8 6
36 36 H 1.08005 * 119.79552 * 180.27635 * 10 9 8
37 37 H 1.08000 * 119.97969 * 179.72270 * 11 10 9
38 38 H 0.96993 * 120.00240 * 180.02562 * 16 15 13
39 39 H 1.08004 * 120.19867 * 359.95876 * 21 8 6
40 40 H 1.08001 * 120.00471 * 0.02562 * 23 22 2
41 41 H 1.08000 * 120.00052 * 179.97438 * 24 23 22
42 42 H 1.08001 * 119.99412 * 179.97438 * 25 24 23
43 43 H 1.07996 * 119.99973 * 179.72326 * 26 25 24
44 44 H 1.07999 * 120.00639 * 359.97438 * 27 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 2.0398 -0.7213 1.2494
5 7 1.4557 -0.1036 2.4424
6 6 1.7645 -0.5768 3.6660
7 8 2.5273 -1.5163 3.7797
8 6 1.1744 0.0463 4.8704
9 6 0.2998 1.1309 4.7404
10 6 -0.2602 1.7156 5.8620
11 6 0.0451 1.2446 7.1200
12 6 0.9268 0.1581 7.2708
13 6 1.2419 -0.3282 8.5610
14 1 0.5567 -0.1687 9.3804
15 6 2.4416 -1.0159 8.7759
16 7 3.4176 -0.9149 7.9105
17 14 2.6496 -2.0781 10.2984
18 1 1.6182 -3.1464 10.3011
19 1 4.0008 -2.6938 10.2915
20 1 2.4951 -1.2378 11.5130
21 6 1.4920 -0.4415 6.1325
22 6 2.0325 -0.7104 -1.2304
23 6 2.2628 0.0004 -2.3933
24 6 2.7233 -0.6514 -3.5221
25 6 2.9540 -2.0138 -3.4876
26 6 2.7189 -2.7255 -2.3262
27 6 2.2623 -2.0731 -1.1962
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 2.9704 1.4236 0.0004
32 1 1.7515 -1.7715 1.2057
33 1 3.1262 -0.6444 1.2953
34 1 0.8467 0.6459 2.3518
35 1 0.0579 1.5111 3.7590
36 1 -0.9376 2.5494 5.7509
37 1 -0.3927 1.7093 7.9911
38 1 4.2490 -1.3918 8.0593
39 1 2.1692 -1.2763 6.2377
40 1 2.0832 1.0650 -2.4200
41 1 2.9029 -0.0960 -4.4308
42 1 3.3133 -2.5231 -4.3697
43 1 2.8949 -3.7908 -2.3006
44 1 2.0821 -2.6286 -0.2878
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000172047112.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:50:37
Heat of formation + Delta-G solvation = -46.026024 kcal
Electronic energy + Delta-G solvation = -26403.169378 eV
Core-core repulsion = 22670.650636 eV
Total energy + Delta-G solvation = -3732.518742 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-40.34338 -39.05466 -37.55518 -36.84451 -34.16812 -33.69141 -32.37071 -31.11731
-30.27528 -29.45824 -29.34281 -26.76362 -25.23624 -23.54446 -22.80532 -21.92530
-20.94809 -20.38792 -19.57321 -17.86412 -17.85182 -16.69905 -16.13493 -15.57225
-15.42912 -15.19816 -14.86825 -14.82517 -14.44939 -14.16221 -13.94891 -13.73584
-13.47083 -13.13547 -12.99512 -12.63391 -12.56837 -12.50316 -12.39959 -12.07201
-11.83131 -11.62954 -11.40184 -11.14720 -11.07365 -10.94069 -10.73890 -10.50121
-10.28018 -10.03001 -9.68716 -9.20491 -9.16094 -9.08015 -8.97324 -8.66855
-7.62294 -7.51363 -6.79620 -4.40862 1.05447 1.16143 2.21680 2.82805
3.07601 3.09310 3.17171 3.50084 3.57418 3.86503 3.92354 4.03978
4.40569 4.50305 4.64017 4.76047 4.78063 4.86341 4.92726 5.22824
5.31826 5.50231 5.51640 5.61079 5.66297 5.67239 5.79609 5.80475
5.90021 6.00246 6.11098 6.21685 6.27387 6.29397 6.31225 6.72651
6.73720 6.83418 6.99193 7.02574 7.21886 7.38890 7.41581 7.71028
7.76666 7.93402 8.09866 8.19745 8.50945 8.80618 8.84061 8.94850
10.15080
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.020827 B = 0.002613 C = 0.002391
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1344.082858 B =10714.954178 C =11705.357739
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.164 3.836
3 O -0.549 6.549
4 C 0.099 3.901
5 N -0.730 5.730
6 C 0.563 3.437
7 O -0.548 6.548
8 C -0.128 4.128
9 C -0.217 4.217
10 C -0.098 4.098
11 C -0.212 4.212
12 C 0.098 3.902
13 C -0.460 4.460
14 H 0.081 0.919
15 C 0.073 3.927
16 N -0.783 5.783
17 Si 0.911 3.089
18 H -0.263 1.263
19 H -0.277 1.277
20 H -0.265 1.265
21 C -0.093 4.093
22 C -0.113 4.113
23 C -0.101 4.101
24 C -0.123 4.123
25 C -0.120 4.120
26 C -0.120 4.120
27 C -0.111 4.111
28 H 0.074 0.926
29 H 0.071 0.929
30 H 0.066 0.934
31 H 0.380 0.620
32 H 0.075 0.925
33 H 0.068 0.932
34 H 0.403 0.597
35 H 0.090 0.910
36 H 0.093 0.907
37 H 0.096 0.904
38 H 0.285 0.715
39 H 0.134 0.866
40 H 0.129 0.871
41 H 0.122 0.878
42 H 0.120 0.880
43 H 0.123 0.877
44 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.584 -0.140 -19.376 19.441
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.123 3.877
3 O -0.355 6.355
4 C -0.026 4.026
5 N -0.385 5.385
6 C 0.354 3.646
7 O -0.426 6.426
8 C -0.131 4.131
9 C -0.237 4.237
10 C -0.116 4.116
11 C -0.232 4.232
12 C 0.096 3.904
13 C -0.489 4.489
14 H 0.099 0.901
15 C -0.146 4.146
16 N -0.408 5.408
17 Si 0.735 3.265
18 H -0.187 1.187
19 H -0.202 1.202
20 H -0.190 1.190
21 C -0.113 4.113
22 C -0.114 4.114
23 C -0.119 4.119
24 C -0.141 4.141
25 C -0.138 4.138
26 C -0.138 4.138
27 C -0.128 4.128
28 H 0.093 0.907
29 H 0.089 0.911
30 H 0.085 0.915
31 H 0.228 0.772
32 H 0.093 0.907
33 H 0.086 0.914
34 H 0.240 0.760
35 H 0.108 0.892
36 H 0.111 0.889
37 H 0.114 0.886
38 H 0.096 0.904
39 H 0.152 0.848
40 H 0.147 0.853
41 H 0.140 0.860
42 H 0.138 0.862
43 H 0.141 0.859
44 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -1.408 -0.761 -19.337 19.403
hybrid contribution 0.604 -0.226 0.492 0.811
sum -0.804 -0.987 -18.844 18.887
Atomic orbital electron populations
1.21756 0.91200 1.03024 1.03294 1.20190 0.95415 0.81931 0.90166
1.86547 1.27230 1.24942 1.96747 1.21950 0.98615 0.97624 0.84416
1.45892 1.50383 1.37310 1.04963 1.18873 0.80145 0.82384 0.83194
1.90693 1.36296 1.28809 1.86849 1.19452 1.01818 0.99358 0.92451
1.20349 1.05238 1.01467 0.96639 1.20439 0.99313 0.98780 0.93070
1.21098 1.06717 0.99888 0.95458 1.17597 0.90155 0.89487 0.93199
1.19554 1.03127 1.30911 0.95322 0.90109 1.25966 0.95127 0.95287
0.98211 1.69782 1.03453 1.32893 1.34640 0.86326 0.78286 0.80520
0.81396 1.18721 1.20238 1.18963 1.21636 1.00212 1.00058 0.89363
1.20385 1.00726 0.94425 0.95855 1.21005 0.98433 1.00426 0.92039
1.21160 0.99899 0.94738 0.98335 1.21202 0.99955 0.94501 0.98117
1.21175 0.99510 1.00062 0.93034 1.21247 0.98692 0.94028 0.98877
0.90703 0.91051 0.91460 0.77175 0.90718 0.91413 0.76010 0.89234
0.88882 0.88620 0.90396 0.84848 0.85311 0.86045 0.86161 0.85886
0.85348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.42 8.60 37.16 0.32 -1.10 16
2 C 0.16 1.79 0.90 -91.77 -0.08 1.71 16
3 O -0.55 -5.97 11.91 -35.23 -0.42 -6.39 16
4 C 0.10 1.36 4.29 -4.04 -0.02 1.34 16
5 N -0.73 -12.12 5.14 -61.23 -0.31 -12.44 16
6 C 0.56 12.35 7.77 -12.31 -0.10 12.26 16
7 O -0.55 -13.72 16.33 5.32 0.09 -13.64 16
8 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16
9 C -0.22 -4.60 9.55 -38.92 -0.37 -4.98 16
10 C -0.10 -2.10 10.01 -39.73 -0.40 -2.50 16
11 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16
12 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16
13 C -0.46 -12.12 9.05 -37.73 -0.34 -12.46 16
14 H 0.08 2.01 7.91 -52.48 -0.42 1.60 16
15 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16
16 N -0.78 -20.84 10.96 55.55 0.61 -20.24 16
17 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16
18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16
19 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16
20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16
21 C -0.09 -2.48 8.24 -38.45 -0.32 -2.80 16
22 C -0.11 -1.15 4.81 -104.63 -0.50 -1.66 16
23 C -0.10 -0.94 9.35 -39.59 -0.37 -1.31 16
24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16
25 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16
26 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16
27 C -0.11 -1.12 9.14 -39.58 -0.36 -1.49 16
28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
29 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16
30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.38 3.26 9.04 45.56 0.41 3.67 16
32 H 0.07 1.04 6.21 -51.93 -0.32 0.71 16
33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
34 H 0.40 6.09 5.00 -40.82 -0.20 5.89 16
35 H 0.09 1.60 6.38 -52.49 -0.33 1.26 16
36 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16
37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16
38 H 0.28 6.98 8.30 -40.82 -0.34 6.65 16
39 H 0.13 3.86 5.74 -52.48 -0.30 3.56 16
40 H 0.13 1.10 7.48 -52.49 -0.39 0.71 16
41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16
42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16
43 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16
44 H 0.13 1.29 6.05 -52.49 -0.32 0.98 16
LS Contribution 366.86 15.07 5.53 5.53
Total: -1.00 -30.74 366.86 -9.69 -40.43
By element:
Atomic # 1 Polarization: 20.24 SS G_CDS: -4.73 Total: 15.51 kcal
Atomic # 6 Polarization: -17.16 SS G_CDS: -5.41 Total: -22.57 kcal
Atomic # 7 Polarization: -32.96 SS G_CDS: 0.29 Total: -32.67 kcal
Atomic # 8 Polarization: -19.69 SS G_CDS: -0.33 Total: -20.02 kcal
Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -30.74 -9.69 -40.43 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000172047112.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.597 kcal
(2) G-P(sol) polarization free energy of solvation -30.741 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.338 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.026 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds