Wall clock time and date at job start Tue Mar 31 2020 14:50:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42902 * 109.47370 * 2 1
4 4 C 1.53007 * 109.46488 * 119.99888 * 2 1 3
5 5 N 1.46497 * 109.47299 * 304.99787 * 4 2 1
6 6 C 1.34775 * 120.00208 * 180.02562 * 5 4 2
7 7 O 1.21553 * 119.99881 * 359.97438 * 6 5 4
8 8 C 1.47886 * 120.00434 * 180.02562 * 6 5 4
9 9 C 1.39925 * 120.01893 * 359.72557 * 8 6 5
10 10 C 1.38326 * 120.35297 * 179.74233 * 9 8 6
11 11 C 1.37754 * 120.41236 * 0.55685 * 10 9 8
12 12 C 1.40742 * 120.04067 * 359.69784 * 11 10 9
13 13 C 1.41438 * 120.18071 * 180.02562 * 12 11 10
14 14 H 1.08003 * 119.99836 * 24.43841 * 13 12 11
15 15 C 1.39935 * 120.00094 * 204.43980 * 13 12 11
16 16 N 1.30827 * 120.00435 * 17.88073 * 15 13 12
17 17 Si 1.86805 * 120.00044 * 197.87690 * 15 13 12
18 18 H 1.48494 * 109.46771 * 60.00123 * 17 15 13
19 19 H 1.48494 * 109.47011 * 180.02562 * 17 15 13
20 20 H 1.48504 * 109.47035 * 300.00245 * 17 15 13
21 21 C 1.38990 * 120.02925 * 179.97438 * 8 6 5
22 22 C 1.50701 * 109.47679 * 239.99812 * 2 1 3
23 23 C 1.38225 * 120.00043 * 89.99746 * 22 2 1
24 24 C 1.38241 * 120.00059 * 180.02562 * 23 22 2
25 25 C 1.38231 * 119.99684 * 359.96270 * 24 23 22
26 26 C 1.38230 * 120.00249 * 0.27478 * 25 24 23
27 27 C 1.38233 * 119.99759 * 270.03193 * 22 2 1
28 28 H 1.08999 * 109.47462 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47178 * 300.00589 * 1 2 3
30 30 H 1.09004 * 109.46641 * 60.00263 * 1 2 3
31 31 H 0.96701 * 113.99830 * 179.97438 * 3 2 1
32 32 H 1.08998 * 109.47149 * 65.00592 * 4 2 1
33 33 H 1.09001 * 109.46684 * 184.99912 * 4 2 1
34 34 H 0.96998 * 120.00216 * 0.02562 * 5 4 2
35 35 H 1.07997 * 119.82221 * 359.97438 * 9 8 6
36 36 H 1.08005 * 119.79552 * 180.27635 * 10 9 8
37 37 H 1.08000 * 119.97969 * 179.72270 * 11 10 9
38 38 H 0.96993 * 120.00240 * 180.02562 * 16 15 13
39 39 H 1.08004 * 120.19867 * 359.95876 * 21 8 6
40 40 H 1.08001 * 120.00471 * 0.02562 * 23 22 2
41 41 H 1.08000 * 120.00052 * 179.97438 * 24 23 22
42 42 H 1.08001 * 119.99412 * 179.97438 * 25 24 23
43 43 H 1.07996 * 119.99973 * 179.72326 * 26 25 24
44 44 H 1.07999 * 120.00639 * 359.97438 * 27 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 2.0398 -0.7213 1.2494
5 7 1.4557 -0.1036 2.4424
6 6 1.7645 -0.5768 3.6660
7 8 2.5273 -1.5163 3.7797
8 6 1.1744 0.0463 4.8704
9 6 0.2998 1.1309 4.7404
10 6 -0.2602 1.7156 5.8620
11 6 0.0451 1.2446 7.1200
12 6 0.9268 0.1581 7.2708
13 6 1.2419 -0.3282 8.5610
14 1 0.5567 -0.1687 9.3804
15 6 2.4416 -1.0159 8.7759
16 7 3.4176 -0.9149 7.9105
17 14 2.6496 -2.0781 10.2984
18 1 1.6182 -3.1464 10.3011
19 1 4.0008 -2.6938 10.2915
20 1 2.4951 -1.2378 11.5130
21 6 1.4920 -0.4415 6.1325
22 6 2.0325 -0.7104 -1.2304
23 6 2.2628 0.0004 -2.3933
24 6 2.7233 -0.6514 -3.5221
25 6 2.9540 -2.0138 -3.4876
26 6 2.7189 -2.7255 -2.3262
27 6 2.2623 -2.0731 -1.1962
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 2.9704 1.4236 0.0004
32 1 1.7515 -1.7715 1.2057
33 1 3.1262 -0.6444 1.2953
34 1 0.8467 0.6459 2.3518
35 1 0.0579 1.5111 3.7590
36 1 -0.9376 2.5494 5.7509
37 1 -0.3927 1.7093 7.9911
38 1 4.2490 -1.3918 8.0593
39 1 2.1692 -1.2763 6.2377
40 1 2.0832 1.0650 -2.4200
41 1 2.9029 -0.0960 -4.4308
42 1 3.3133 -2.5231 -4.3697
43 1 2.8949 -3.7908 -2.3006
44 1 2.0821 -2.6286 -0.2878
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000172047112.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:50:36
Heat of formation + Delta-G solvation = -65.062222 kcal
Electronic energy + Delta-G solvation = -26403.994849 eV
Core-core repulsion = 22670.650636 eV
Total energy + Delta-G solvation = -3733.344213 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.37991 -40.48719 -38.89446 -38.22958 -35.71921 -35.35127 -33.38651 -32.01655
-31.76767 -31.28082 -30.24717 -28.01704 -27.06442 -24.64305 -23.78694 -23.09694
-22.75662 -21.40881 -21.11342 -19.58749 -18.74725 -18.09853 -17.24403 -17.08775
-16.65516 -16.62205 -16.42655 -15.88469 -15.66841 -15.36333 -15.15199 -15.08910
-14.74007 -14.44775 -14.27758 -14.17590 -13.90640 -13.51398 -13.38156 -13.31939
-12.96645 -12.93390 -12.80620 -12.60746 -12.52949 -12.21484 -12.13357 -11.91318
-11.72062 -11.52253 -11.20377 -11.06873 -10.78805 -10.18507 -9.84639 -9.72948
-9.47888 -9.39138 -8.66978 -6.38451 0.35555 0.36993 0.47549 1.00840
1.35973 1.47627 1.50537 2.08049 2.16658 2.19359 2.78002 2.82257
3.17593 3.51161 3.58640 3.69332 3.89129 4.01292 4.09928 4.14734
4.28283 4.40950 4.50671 4.56468 4.58928 4.65526 4.68001 4.78625
4.87456 4.90989 5.05317 5.08345 5.14328 5.17392 5.18955 5.30718
5.38446 5.51541 5.55213 5.60249 5.61358 5.85739 5.92231 6.04823
6.07508 6.27990 6.48436 6.63119 6.68138 6.87360 6.94155 7.27514
8.29671
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.020827 B = 0.002613 C = 0.002391
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1344.082858 B =10714.954178 C =11705.357739
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.178 3.822
3 O -0.554 6.554
4 C 0.097 3.903
5 N -0.705 5.705
6 C 0.560 3.440
7 O -0.589 6.589
8 C -0.138 4.138
9 C -0.198 4.198
10 C -0.095 4.095
11 C -0.217 4.217
12 C 0.066 3.934
13 C -0.497 4.497
14 H 0.085 0.915
15 C 0.029 3.971
16 N -0.825 5.825
17 Si 0.983 3.017
18 H -0.260 1.260
19 H -0.272 1.272
20 H -0.252 1.252
21 C -0.131 4.131
22 C -0.122 4.122
23 C -0.106 4.106
24 C -0.125 4.125
25 C -0.121 4.121
26 C -0.129 4.129
27 C -0.128 4.128
28 H 0.077 0.923
29 H 0.067 0.933
30 H 0.078 0.922
31 H 0.390 0.610
32 H 0.073 0.927
33 H 0.059 0.941
34 H 0.413 0.587
35 H 0.133 0.867
36 H 0.139 0.861
37 H 0.109 0.891
38 H 0.287 0.713
39 H 0.099 0.901
40 H 0.137 0.863
41 H 0.145 0.855
42 H 0.144 0.856
43 H 0.136 0.864
44 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.724 1.116 -21.438 21.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.137 3.863
3 O -0.361 6.361
4 C -0.027 4.027
5 N -0.359 5.359
6 C 0.350 3.650
7 O -0.471 6.471
8 C -0.141 4.141
9 C -0.218 4.218
10 C -0.113 4.113
11 C -0.236 4.236
12 C 0.064 3.936
13 C -0.526 4.526
14 H 0.103 0.897
15 C -0.186 4.186
16 N -0.451 5.451
17 Si 0.803 3.197
18 H -0.185 1.185
19 H -0.197 1.197
20 H -0.176 1.176
21 C -0.152 4.152
22 C -0.123 4.123
23 C -0.124 4.124
24 C -0.143 4.143
25 C -0.139 4.139
26 C -0.147 4.147
27 C -0.146 4.146
28 H 0.096 0.904
29 H 0.086 0.914
30 H 0.097 0.903
31 H 0.240 0.760
32 H 0.091 0.909
33 H 0.078 0.922
34 H 0.252 0.748
35 H 0.150 0.850
36 H 0.156 0.844
37 H 0.127 0.873
38 H 0.097 0.903
39 H 0.117 0.883
40 H 0.154 0.846
41 H 0.163 0.837
42 H 0.161 0.839
43 H 0.154 0.846
44 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -2.575 0.540 -21.440 21.601
hybrid contribution 0.890 -0.512 0.911 1.373
sum -1.685 0.028 -20.529 20.598
Atomic orbital electron populations
1.21800 0.90641 1.03409 1.03654 1.19999 0.95714 0.81707 0.88881
1.86524 1.28304 1.24640 1.96641 1.22157 0.98129 0.97993 0.84456
1.45670 1.49342 1.36719 1.04172 1.18752 0.79877 0.82066 0.84344
1.90669 1.38204 1.30672 1.87543 1.19756 1.02090 1.00050 0.92237
1.20824 1.02749 0.99384 0.98807 1.20923 0.99133 0.99394 0.91862
1.21408 1.05795 0.99055 0.97385 1.17957 0.91428 0.90793 0.93422
1.19843 1.04058 1.33016 0.95706 0.89710 1.26872 0.94364 0.95996
1.01371 1.69886 1.04043 1.34253 1.36882 0.85237 0.78251 0.78579
0.77597 1.18473 1.19684 1.17573 1.21448 1.01886 1.00658 0.91184
1.20295 1.01730 0.94409 0.95863 1.21138 0.98423 1.00819 0.91976
1.21482 0.98940 0.94993 0.98862 1.21531 0.99130 0.94710 0.98553
1.21416 0.99269 1.00960 0.93022 1.21310 0.99777 0.94311 0.99240
0.90407 0.91383 0.90323 0.76050 0.90875 0.92244 0.74795 0.84975
0.84355 0.87267 0.90296 0.88258 0.84560 0.83741 0.83851 0.84601
0.86160
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.60 8.60 71.98 0.62 -1.98 16
2 C 0.18 3.63 0.90 -11.54 -0.01 3.62 16
3 O -0.55 -10.87 11.91 -148.98 -1.77 -12.64 16
4 C 0.10 2.62 4.29 86.38 0.37 2.99 16
5 N -0.71 -22.79 5.14 -465.93 -2.39 -25.18 16
6 C 0.56 24.95 7.77 86.80 0.67 25.62 16
7 O -0.59 -30.88 16.33 -3.88 -0.06 -30.94 16
8 C -0.14 -6.63 5.87 -20.13 -0.12 -6.75 16
9 C -0.20 -7.93 9.55 22.70 0.22 -7.71 16
10 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16
11 C -0.22 -10.21 9.78 22.77 0.22 -9.99 16
12 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16
13 C -0.50 -27.26 9.05 23.47 0.21 -27.05 16
14 H 0.08 4.37 7.91 -2.91 -0.02 4.34 16
15 C 0.03 1.53 5.14 85.25 0.44 1.96 16
16 N -0.83 -46.48 10.96 21.82 0.24 -46.24 16
17 Si 0.98 39.88 29.60 68.60 2.03 41.91 16
18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16
19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16
20 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16
21 C -0.13 -7.38 8.24 23.01 0.19 -7.19 16
22 C -0.12 -2.33 4.81 -19.87 -0.10 -2.42 16
23 C -0.11 -1.73 9.35 22.27 0.21 -1.53 16
24 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16
25 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16
26 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16
27 C -0.13 -2.53 9.14 22.27 0.20 -2.33 16
28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
29 H 0.07 1.31 6.57 -2.39 -0.02 1.29 16
30 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16
31 H 0.39 5.99 9.04 -74.06 -0.67 5.32 16
32 H 0.07 2.05 6.21 -2.39 -0.01 2.04 16
33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
34 H 0.41 11.50 5.00 -92.71 -0.46 11.04 16
35 H 0.13 4.12 6.38 -2.91 -0.02 4.10 16
36 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16
37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16
38 H 0.29 14.90 8.30 -92.71 -0.77 14.14 16
39 H 0.10 6.21 5.74 -2.91 -0.02 6.19 16
40 H 0.14 1.99 7.48 -2.91 -0.02 1.97 16
41 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16
42 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16
43 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16
44 H 0.12 2.47 6.05 -2.91 -0.02 2.46 16
Total: -1.00 -70.51 366.86 1.86 -68.66
By element:
Atomic # 1 Polarization: 42.31 SS G_CDS: -0.09 Total: 42.22 kcal
Atomic # 6 Polarization: -41.68 SS G_CDS: 3.91 Total: -37.77 kcal
Atomic # 7 Polarization: -69.27 SS G_CDS: -2.16 Total: -71.43 kcal
Atomic # 8 Polarization: -41.75 SS G_CDS: -1.84 Total: -43.59 kcal
Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal
Total: -70.51 1.86 -68.66 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000172047112.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.593 kcal
(2) G-P(sol) polarization free energy of solvation -70.511 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.918 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds