Wall clock time and date at job start Tue Mar 31 2020 14:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47345 * 2 1 4 4 C 1.53004 * 109.46775 * 239.99689 * 2 1 3 5 5 N 1.46502 * 109.46882 * 60.00332 * 4 2 1 6 6 C 1.34777 * 119.99635 * 179.97438 * 5 4 2 7 7 O 1.21545 * 120.00309 * 359.72190 * 6 5 4 8 8 C 1.47887 * 119.99896 * 179.72266 * 6 5 4 9 9 C 1.39924 * 120.02502 * 359.72184 * 8 6 5 10 10 C 1.38325 * 120.36030 * 179.78512 * 9 8 6 11 11 C 1.37761 * 120.40864 * 0.47303 * 10 9 8 12 12 C 1.40746 * 120.03941 * 359.78148 * 11 10 9 13 13 C 1.41435 * 120.17588 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00545 * 334.93157 * 13 12 11 15 15 C 1.39934 * 119.99927 * 154.93179 * 13 12 11 16 16 N 1.30827 * 120.00176 * 342.58689 * 15 13 12 17 17 Si 1.86801 * 120.00190 * 162.58884 * 15 13 12 18 18 H 1.48495 * 109.47244 * 89.99944 * 17 15 13 19 19 H 1.48506 * 109.47230 * 210.00127 * 17 15 13 20 20 H 1.48502 * 109.46941 * 329.99888 * 17 15 13 21 21 C 1.38990 * 120.02443 * 179.97438 * 8 6 5 22 22 C 1.50703 * 109.47322 * 120.00044 * 2 1 3 23 23 C 1.38233 * 119.99737 * 89.72386 * 22 2 1 24 24 C 1.38245 * 119.99593 * 179.79201 * 23 22 2 25 25 C 1.38233 * 119.99588 * 0.43877 * 24 23 22 26 26 C 1.38237 * 120.00375 * 359.81283 * 25 24 23 27 27 C 1.38226 * 119.99897 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47514 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46900 * 300.00031 * 1 2 3 30 30 H 1.09004 * 109.47427 * 59.99985 * 1 2 3 31 31 H 0.96698 * 113.99882 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47336 * 299.99979 * 4 2 1 33 33 H 1.09003 * 109.47073 * 180.02562 * 4 2 1 34 34 H 0.97001 * 120.00114 * 359.72106 * 5 4 2 35 35 H 1.08004 * 119.81854 * 0.02562 * 9 8 6 36 36 H 1.07997 * 119.79847 * 180.23600 * 10 9 8 37 37 H 1.08003 * 119.97736 * 179.76583 * 11 10 9 38 38 H 0.96998 * 120.00419 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.20359 * 359.95461 * 21 8 6 40 40 H 1.07998 * 120.00750 * 359.97438 * 23 22 2 41 41 H 1.07998 * 119.99820 * 180.27459 * 24 23 22 42 42 H 1.08007 * 119.99376 * 179.83959 * 25 24 23 43 43 H 1.07999 * 119.99871 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00068 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7214 -1.2493 5 7 1.5515 -0.0307 -2.4454 6 6 1.8775 -0.4910 -3.6695 7 8 2.5807 -1.4760 -3.7811 8 6 1.3795 0.2026 -4.8770 9 6 0.5651 1.3332 -4.7493 10 6 0.0991 1.9899 -5.8740 11 6 0.4232 1.5330 -7.1326 12 6 1.2368 0.3942 -7.2809 13 6 1.5709 -0.0777 -8.5716 14 1 0.9259 0.1402 -9.4100 15 6 2.7372 -0.8270 -8.7625 16 7 3.6813 -0.8098 -7.8570 17 14 2.9461 -1.8518 -10.3103 18 1 3.5978 -1.0317 -11.3628 19 1 3.7920 -3.0350 -10.0102 20 1 1.6147 -2.3036 -10.7883 21 6 1.7158 -0.2713 -6.1396 22 6 2.0323 -0.7104 1.2305 23 6 2.2573 -2.0739 1.1978 24 6 2.7223 -2.7249 2.3253 25 6 2.9535 -2.0137 3.4879 26 6 2.7236 -0.6510 3.5220 27 6 2.2629 0.0005 2.3933 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.9703 1.4235 -0.0004 32 1 1.6765 -1.7490 -1.2492 33 1 3.1299 -0.7218 -1.2491 34 1 0.9906 0.7556 -2.3564 35 1 0.3021 1.6975 -3.7671 36 1 -0.5258 2.8639 -5.7648 37 1 0.0524 2.0489 -8.0060 38 1 4.4896 -1.3295 -7.9891 39 1 2.3413 -1.1455 -6.2430 40 1 2.0727 -2.6303 0.2908 41 1 2.9022 -3.7894 2.2986 42 1 3.3143 -2.5228 4.3695 43 1 2.9047 -0.0954 4.4302 44 1 2.0828 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172047117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:43 Heat of formation + Delta-G solvation = -66.324158 kcal Electronic energy + Delta-G solvation = -26400.202954 eV Core-core repulsion = 22666.804019 eV Total energy + Delta-G solvation = -3733.398935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 6.48 seconds Orbital eigenvalues (eV) -41.36991 -40.48658 -38.89357 -38.22824 -35.70619 -35.32482 -33.41007 -32.01585 -31.76447 -31.28161 -30.25616 -27.99073 -27.05810 -24.62552 -23.79071 -23.09684 -22.75502 -21.43200 -21.09861 -19.58033 -18.74301 -18.08902 -17.23279 -17.07507 -16.65804 -16.61552 -16.42194 -15.88573 -15.66417 -15.35088 -15.16215 -15.08846 -14.75537 -14.43708 -14.27460 -14.17669 -13.89915 -13.51899 -13.37887 -13.32546 -12.97863 -12.94287 -12.78145 -12.60015 -12.54366 -12.21330 -12.12790 -11.92167 -11.72561 -11.51799 -11.19974 -11.06865 -10.79042 -10.18645 -9.84511 -9.72806 -9.47288 -9.38837 -8.66676 -6.38393 0.35666 0.37018 0.47668 1.00470 1.36131 1.46070 1.52421 2.08076 2.16264 2.19515 2.78348 2.82243 3.18830 3.51536 3.58453 3.69260 3.89681 4.02210 4.10211 4.14936 4.28753 4.41122 4.51673 4.56771 4.59020 4.64842 4.68266 4.79342 4.87714 4.91019 5.05009 5.08595 5.14371 5.17828 5.18934 5.30735 5.38352 5.51703 5.55302 5.60342 5.61407 5.85914 5.92261 6.04863 6.07587 6.28128 6.48887 6.62872 6.68426 6.87693 6.94190 7.27855 8.30247 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.002613 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.141715 B =10713.137977 C =11715.185845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.179 3.821 3 O -0.553 6.553 4 C 0.097 3.903 5 N -0.705 5.705 6 C 0.560 3.440 7 O -0.589 6.589 8 C -0.138 4.138 9 C -0.197 4.197 10 C -0.096 4.096 11 C -0.216 4.216 12 C 0.066 3.934 13 C -0.497 4.497 14 H 0.084 0.916 15 C 0.029 3.971 16 N -0.826 5.826 17 Si 0.983 3.017 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.255 1.255 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.106 4.106 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.390 0.610 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.413 0.587 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.286 0.714 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 0.946 21.360 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.137 3.863 3 O -0.360 6.360 4 C -0.027 4.027 5 N -0.358 5.358 6 C 0.350 3.650 7 O -0.471 6.471 8 C -0.141 4.141 9 C -0.217 4.217 10 C -0.114 4.114 11 C -0.236 4.236 12 C 0.064 3.936 13 C -0.526 4.526 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.452 5.452 17 Si 0.803 3.197 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.178 1.178 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.124 4.124 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.239 0.761 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.252 0.748 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.137 0.317 21.372 21.604 hybrid contribution 0.918 -0.510 -0.906 1.387 sum -2.219 -0.193 20.467 20.587 Atomic orbital electron populations 1.21800 0.90617 1.03392 1.03657 1.20003 0.95701 0.81721 0.88854 1.86517 1.28300 1.24600 1.96622 1.22132 0.99122 0.96989 0.84409 1.45625 1.53688 1.32558 1.03951 1.18744 0.78924 0.82967 0.84382 1.90668 1.40069 1.28697 1.87666 1.19754 1.02978 0.99207 0.92192 1.20830 1.04011 0.98057 0.98756 1.20926 0.99201 0.99381 0.91844 1.21417 1.06681 0.98110 0.97370 1.17959 0.91276 0.90895 0.93458 1.19851 1.06833 1.30984 0.94957 0.89746 1.26866 0.94242 0.95949 1.01554 1.69890 1.05769 1.33301 1.36208 0.85199 0.79469 0.77807 0.77243 1.18138 1.19752 1.17827 1.21439 1.01997 1.00363 0.91295 1.20307 1.01742 0.94398 0.95865 1.21296 0.99732 0.94290 0.99269 1.21419 0.99244 1.00980 0.93040 1.21533 0.99163 0.94711 0.98534 1.21478 0.98960 0.94985 0.98872 1.21137 0.98432 1.00828 0.91973 0.90416 0.90384 0.91405 0.76064 0.90972 0.92283 0.74773 0.84939 0.84354 0.87264 0.90330 0.88319 0.86170 0.84598 0.83862 0.83759 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.65 71.98 0.62 -1.95 16 2 C 0.18 3.62 0.88 -11.54 -0.01 3.61 16 3 O -0.55 -10.79 11.71 -148.98 -1.75 -12.53 16 4 C 0.10 2.64 4.09 86.38 0.35 2.99 16 5 N -0.70 -22.69 5.10 -465.92 -2.38 -25.07 16 6 C 0.56 24.91 7.77 86.80 0.67 25.59 16 7 O -0.59 -30.87 16.33 -3.86 -0.06 -30.93 16 8 C -0.14 -6.62 5.87 -20.13 -0.12 -6.74 16 9 C -0.20 -7.87 9.55 22.70 0.22 -7.65 16 10 C -0.10 -3.83 10.01 22.18 0.22 -3.61 16 11 C -0.22 -10.18 9.78 22.77 0.22 -9.95 16 12 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 13 C -0.50 -27.27 9.05 23.47 0.21 -27.06 16 14 H 0.08 4.36 7.90 -2.91 -0.02 4.33 16 15 C 0.03 1.51 5.14 85.25 0.44 1.95 16 16 N -0.83 -46.54 10.97 21.82 0.24 -46.30 16 17 Si 0.98 39.91 29.59 68.60 2.03 41.94 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 21 C -0.13 -7.33 8.23 23.01 0.19 -7.14 16 22 C -0.12 -2.33 4.80 -19.87 -0.10 -2.42 16 23 C -0.13 -2.51 9.14 22.27 0.20 -2.31 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 25 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 26 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 27 C -0.11 -1.74 9.35 22.27 0.21 -1.53 16 28 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.30 6.86 -2.39 -0.02 1.29 16 31 H 0.39 6.02 9.04 -74.06 -0.67 5.35 16 32 H 0.07 2.02 6.51 -2.39 -0.02 2.01 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 11.49 5.20 -92.71 -0.48 11.01 16 35 H 0.13 4.13 6.38 -2.91 -0.02 4.11 16 36 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 39 H 0.10 6.17 5.76 -2.91 -0.02 6.15 16 40 H 0.12 2.45 6.17 -2.91 -0.02 2.44 16 41 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.14 1.99 7.48 -2.91 -0.02 1.97 16 Total: -1.00 -70.47 367.39 1.87 -68.60 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: -0.11 Total: 41.98 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 3.89 Total: -37.69 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -2.14 Total: -71.37 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.81 Total: -43.46 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -70.47 1.87 -68.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172047117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.271 kcal (2) G-P(sol) polarization free energy of solvation -70.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.48 seconds