Wall clock time and date at job start Tue Mar 31 2020 16:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.50702 * 109.46902 * 120.00026 * 2 1 3 5 5 C 1.38279 * 119.97325 * 74.91287 * 4 2 1 6 6 C 1.38248 * 120.11127 * 179.97438 * 5 4 2 7 7 C 1.38166 * 120.05380 * 359.97438 * 6 5 4 8 8 C 1.38712 * 119.94258 * 359.76062 * 7 6 5 9 9 O 1.35900 * 120.05423 * 180.25916 * 8 7 6 10 10 C 1.38125 * 119.96831 * 254.89027 * 4 2 1 11 11 N 1.46498 * 109.47034 * 239.99918 * 2 1 3 12 12 C 1.46499 * 120.00005 * 356.54115 * 11 2 1 13 13 C 1.34776 * 119.99786 * 176.54427 * 11 2 1 14 14 O 1.21540 * 120.00089 * 5.12726 * 13 11 2 15 15 C 1.47887 * 119.99727 * 185.12254 * 13 11 2 16 16 C 1.39919 * 120.02495 * 214.37494 * 15 13 11 17 17 C 1.38330 * 120.36019 * 179.72057 * 16 15 13 18 18 C 1.37760 * 120.40843 * 0.55773 * 17 16 15 19 19 C 1.40753 * 120.03909 * 359.72376 * 18 17 16 20 20 C 1.41439 * 120.17536 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00010 * 143.40618 * 20 19 18 22 22 C 1.39937 * 119.99999 * 323.39869 * 20 19 18 23 23 N 1.30829 * 119.99924 * 172.56331 * 22 20 19 24 24 Si 1.86801 * 120.00166 * 352.56976 * 22 20 19 25 25 H 1.48498 * 109.47149 * 87.89144 * 24 22 20 26 26 H 1.48502 * 109.47307 * 207.89496 * 24 22 20 27 27 H 1.48502 * 109.47232 * 327.89330 * 24 22 20 28 28 C 1.38994 * 120.02526 * 34.65316 * 15 13 11 29 29 H 1.08996 * 109.47405 * 300.00199 * 1 2 3 30 30 H 1.08998 * 109.47253 * 59.99948 * 1 2 3 31 31 H 1.08997 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.94977 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.97347 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.02410 * 180.02562 * 7 6 5 35 35 H 0.96698 * 114.00531 * 270.25874 * 9 8 7 36 36 H 1.07996 * 120.02945 * 0.02562 * 10 4 2 37 37 H 1.09005 * 109.47120 * 85.26422 * 12 11 2 38 38 H 1.09001 * 109.47080 * 205.26054 * 12 11 2 39 39 H 1.08997 * 109.47569 * 325.25943 * 12 11 2 40 40 H 1.08003 * 119.82093 * 359.97438 * 16 15 13 41 41 H 1.07998 * 119.79924 * 180.26176 * 17 16 15 42 42 H 1.07998 * 119.97714 * 179.74003 * 18 17 16 43 43 H 0.96995 * 119.99838 * 180.02562 * 23 22 20 44 44 H 1.07998 * 120.20554 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.9686 -2.0897 1.3063 6 6 2.4291 -2.7444 2.4335 7 6 2.9547 -2.0216 3.4872 8 6 3.0247 -0.6383 3.4113 9 8 3.5462 0.0745 4.4442 10 6 2.5564 0.0167 2.2814 11 7 2.0183 -0.6906 -1.1961 12 6 1.0685 -1.3133 -2.1215 13 6 3.3414 -0.7532 -1.4452 14 8 4.1340 -0.3192 -0.6324 15 6 3.8288 -1.3500 -2.7075 16 6 5.0303 -2.0668 -2.7249 17 6 5.4897 -2.6329 -3.9005 18 6 4.7759 -2.4878 -5.0698 19 6 3.5680 -1.7652 -5.0729 20 6 2.8325 -1.6149 -6.2717 21 1 1.7529 -1.6263 -6.2478 22 6 3.5038 -1.4514 -7.4886 23 7 2.8330 -1.4584 -8.6118 24 14 5.3577 -1.2233 -7.5094 25 1 6.0194 -2.5519 -7.5562 26 1 5.7461 -0.4344 -8.7060 27 1 5.7816 -0.5023 -6.2823 28 6 3.0966 -1.1943 -3.8786 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.5592 -2.6566 0.4832 33 1 2.3779 -3.8217 2.4905 34 1 3.3146 -2.5336 4.3674 35 1 2.8949 0.3380 5.1087 36 1 2.6058 1.0939 2.2218 37 1 0.7103 -0.5673 -2.8310 38 1 1.5635 -2.1202 -2.6618 39 1 0.2251 -1.7156 -1.5604 40 1 5.6000 -2.1823 -1.8147 41 1 6.4161 -3.1879 -3.9027 42 1 5.1432 -2.9291 -5.9845 43 1 3.2983 -1.3454 -9.4553 44 1 2.1707 -0.6384 -3.8707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177642652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:15 Heat of formation + Delta-G solvation = -38.972549 kcal Electronic energy + Delta-G solvation = -27183.455953 eV Core-core repulsion = 23451.243073 eV Total energy + Delta-G solvation = -3732.212880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65144 -40.48956 -39.18941 -38.01317 -36.81096 -35.46587 -33.76170 -32.38325 -31.65519 -30.77642 -29.99853 -28.17190 -27.04297 -25.33075 -23.83361 -23.58677 -22.67438 -22.04029 -20.65940 -19.27380 -18.76494 -17.87138 -17.73162 -17.53786 -17.12566 -16.80887 -16.54829 -16.19586 -15.94042 -15.53352 -15.10267 -14.86749 -14.69031 -14.48981 -14.38107 -13.99199 -13.78075 -13.71780 -13.36064 -13.32237 -13.13618 -13.03263 -12.91147 -12.71722 -12.49424 -12.32011 -12.29160 -12.18476 -11.76020 -11.54836 -11.43459 -11.21888 -10.76077 -9.83425 -9.75195 -9.59343 -9.54445 -9.42645 -8.82075 -6.52334 0.24339 0.28319 0.36558 0.72217 1.26593 1.39031 1.46301 1.84529 2.00839 2.12070 2.66493 2.71959 3.24884 3.36429 3.64813 3.73613 3.92052 4.08262 4.16568 4.19764 4.24472 4.28547 4.37496 4.41331 4.54525 4.58756 4.61402 4.74033 4.84577 4.90547 4.92747 4.95128 4.98088 5.05427 5.17409 5.23156 5.40093 5.42015 5.43970 5.51476 5.60294 5.68626 5.75358 5.86312 5.90492 6.07979 6.33602 6.34468 6.63680 6.82514 6.86420 7.16056 8.25868 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.003171 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.778564 B = 8827.311782 C = 9413.283178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.181 3.819 3 H 0.071 0.929 4 C -0.071 4.071 5 C -0.126 4.126 6 C -0.106 4.106 7 C -0.156 4.156 8 C 0.097 3.903 9 O -0.510 6.510 10 C -0.144 4.144 11 N -0.600 5.600 12 C 0.065 3.935 13 C 0.562 3.438 14 O -0.570 6.570 15 C -0.112 4.112 16 C -0.174 4.174 17 C -0.090 4.090 18 C -0.221 4.221 19 C 0.068 3.932 20 C -0.478 4.478 21 H 0.069 0.931 22 C 0.049 3.951 23 N -0.859 5.859 24 Si 0.953 3.047 25 H -0.254 1.254 26 H -0.283 1.283 27 H -0.259 1.259 28 C -0.162 4.162 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.409 0.591 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.291 0.709 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 -0.375 19.479 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.078 3.922 3 H 0.089 0.911 4 C -0.072 4.072 5 C -0.144 4.144 6 C -0.124 4.124 7 C -0.174 4.174 8 C 0.053 3.947 9 O -0.324 6.324 10 C -0.163 4.163 11 N -0.332 5.332 12 C -0.077 4.077 13 C 0.352 3.648 14 O -0.450 6.450 15 C -0.115 4.115 16 C -0.194 4.194 17 C -0.108 4.108 18 C -0.241 4.241 19 C 0.065 3.935 20 C -0.508 4.508 21 H 0.087 0.913 22 C -0.164 4.164 23 N -0.487 5.487 24 Si 0.778 3.222 25 H -0.179 1.179 26 H -0.210 1.210 27 H -0.183 1.183 28 C -0.181 4.181 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.268 0.732 36 H 0.144 0.856 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.264 -0.185 19.320 20.025 hybrid contribution 0.416 0.273 -0.390 0.632 sum -4.848 0.088 18.930 19.541 Atomic orbital electron populations 1.22095 0.89792 1.04133 1.04291 1.20045 0.96671 0.94442 0.81002 0.91109 1.20026 0.97990 0.94325 0.94870 1.21091 1.01010 0.93811 0.98491 1.21277 0.97396 1.00989 0.92764 1.21617 1.01555 0.93307 1.00940 1.18536 0.96580 0.90390 0.89213 1.84796 1.38863 1.73707 1.34992 1.21310 0.99918 1.00596 0.94520 1.47888 1.05335 1.55522 1.24421 1.22371 0.93488 0.98535 0.93256 1.18668 0.82420 0.77997 0.85707 1.90701 1.55906 1.49641 1.48747 1.19694 0.97191 1.01760 0.92810 1.20747 0.96686 1.03825 0.98116 1.20906 0.99232 0.98717 0.91913 1.21524 0.99697 1.04767 0.98068 1.17831 0.92071 0.90193 0.93382 1.19381 0.95317 1.45804 0.90324 0.91305 1.26598 1.04026 0.91370 0.94402 1.69646 1.40366 1.39140 0.99535 0.85696 0.78673 0.79705 0.78098 1.17920 1.20967 1.18292 1.21680 1.01619 1.03067 0.91748 0.89403 0.90301 0.90343 0.85809 0.83567 0.83845 0.73212 0.85638 0.91460 0.90978 0.88017 0.87019 0.84832 0.87537 0.89872 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.02 71.98 0.58 -1.73 16 2 C 0.18 4.44 2.88 44.25 0.13 4.57 16 3 H 0.07 1.90 7.95 -2.39 -0.02 1.88 16 4 C -0.07 -1.83 3.65 -19.88 -0.07 -1.91 16 5 C -0.13 -3.08 9.21 22.28 0.21 -2.88 16 6 C -0.11 -2.32 10.04 22.25 0.22 -2.10 16 7 C -0.16 -3.39 9.99 22.37 0.22 -3.17 16 8 C 0.10 2.34 6.70 22.50 0.15 2.49 16 9 O -0.51 -10.58 13.50 -92.42 -1.25 -11.83 16 10 C -0.14 -3.74 9.61 22.36 0.21 -3.52 16 11 N -0.60 -17.56 2.47 -830.17 -2.05 -19.61 16 12 C 0.07 1.60 7.86 127.77 1.00 2.60 16 13 C 0.56 21.55 7.11 86.80 0.62 22.17 16 14 O -0.57 -25.09 15.95 -3.84 -0.06 -25.16 16 15 C -0.11 -4.59 5.19 -20.13 -0.10 -4.70 16 16 C -0.17 -7.14 9.61 22.70 0.22 -6.93 16 17 C -0.09 -3.61 10.01 22.18 0.22 -3.38 16 18 C -0.22 -9.94 7.02 22.77 0.16 -9.78 16 19 C 0.07 3.21 5.04 -21.32 -0.11 3.11 16 20 C -0.48 -24.98 9.60 23.47 0.23 -24.75 16 21 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 22 C 0.05 2.53 5.49 85.25 0.47 3.00 16 23 N -0.86 -45.81 13.93 21.82 0.30 -45.50 16 24 Si 0.95 41.88 24.46 68.60 1.68 43.56 16 25 H -0.25 -10.43 6.57 99.48 0.65 -9.78 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.26 -11.80 6.80 99.48 0.68 -11.13 16 28 C -0.16 -6.87 7.31 23.01 0.17 -6.70 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.14 7.86 -2.39 -0.02 1.12 16 31 H 0.08 1.09 6.70 -2.39 -0.02 1.07 16 32 H 0.12 2.87 7.87 -2.91 -0.02 2.85 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.41 3.78 9.06 -74.06 -0.67 3.11 16 36 H 0.13 3.08 8.00 -2.91 -0.02 3.06 16 37 H 0.07 1.60 7.05 -2.38 -0.02 1.58 16 38 H 0.07 2.10 5.69 -2.39 -0.01 2.08 16 39 H 0.10 1.76 6.02 -2.39 -0.01 1.75 16 40 H 0.11 4.42 7.98 -2.91 -0.02 4.39 16 41 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.11 4.74 4.68 -2.91 -0.01 4.73 16 43 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 44 H 0.13 5.03 5.43 -2.91 -0.02 5.01 16 Total: -1.00 -67.53 358.07 3.43 -64.10 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.29 Total: 28.06 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 4.52 Total: -33.61 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -1.74 Total: -65.12 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.31 Total: -36.99 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.68 Total: 43.56 kcal Total: -67.53 3.43 -64.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177642652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.124 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds