Wall clock time and date at job start Tue Mar 31 2020 16:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46639 * 2 1 4 4 C 1.53001 * 109.47054 * 240.00489 * 2 1 3 5 5 C 1.50699 * 109.47036 * 174.99969 * 4 2 1 6 6 C 1.38266 * 119.94582 * 89.99876 * 5 4 2 7 7 C 1.38143 * 120.05763 * 179.70231 * 6 5 4 8 8 C 1.38736 * 119.94035 * 0.27321 * 7 6 5 9 9 O 1.35906 * 120.05244 * 180.02562 * 8 7 6 10 10 C 1.38728 * 119.89024 * 359.97438 * 8 7 6 11 11 C 1.38148 * 119.94512 * 0.02562 * 10 8 7 12 12 N 1.46497 * 109.47247 * 120.00150 * 2 1 3 13 13 C 1.34781 * 119.99943 * 274.99895 * 12 2 1 14 14 O 1.21547 * 119.99604 * 0.02562 * 13 12 2 15 15 C 1.47885 * 119.99679 * 180.02562 * 13 12 2 16 16 C 1.39916 * 120.02559 * 359.72409 * 15 13 12 17 17 C 1.38333 * 120.35710 * 179.71572 * 16 15 13 18 18 C 1.37754 * 120.40829 * 0.56373 * 17 16 15 19 19 C 1.40751 * 120.03997 * 359.71791 * 18 17 16 20 20 C 1.41442 * 120.17407 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00307 * 334.93442 * 20 19 18 22 22 C 1.39936 * 119.99426 * 154.92846 * 20 19 18 23 23 N 1.30824 * 120.00658 * 342.58941 * 22 20 19 24 24 Si 1.86802 * 119.99780 * 162.58729 * 22 20 19 25 25 H 1.48505 * 109.47315 * 89.99892 * 24 22 20 26 26 H 1.48498 * 109.47282 * 210.00119 * 24 22 20 27 27 H 1.48503 * 109.47038 * 330.00313 * 24 22 20 28 28 C 1.38995 * 120.02171 * 180.02562 * 15 13 12 29 29 H 1.08994 * 109.47000 * 300.00072 * 1 2 3 30 30 H 1.09003 * 109.47070 * 60.00068 * 1 2 3 31 31 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47255 * 54.99338 * 4 2 1 33 33 H 1.09004 * 109.46706 * 294.99670 * 4 2 1 34 34 H 1.08006 * 119.96899 * 359.97438 * 6 5 4 35 35 H 1.07995 * 120.02540 * 180.29681 * 7 6 5 36 36 H 0.96698 * 113.99873 * 90.00062 * 9 8 7 37 37 H 1.08003 * 120.02762 * 179.97438 * 10 8 7 38 38 H 1.07996 * 119.97318 * 180.02562 * 11 10 8 39 39 H 0.96998 * 119.99946 * 94.99895 * 12 2 1 40 40 H 1.07995 * 119.82559 * 359.97438 * 16 15 13 41 41 H 1.07994 * 119.79673 * 180.26389 * 17 16 15 42 42 H 1.08008 * 119.97835 * 179.74273 * 18 17 16 43 43 H 0.96994 * 120.00442 * 179.97438 * 23 22 20 44 44 H 1.07997 * 120.20223 * 359.97383 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 6 4.3282 -1.5823 -0.7150 7 6 5.7052 -1.4904 -0.7771 8 6 6.2990 -0.4230 -1.4350 9 8 7.6534 -0.3306 -1.4979 10 6 5.5078 0.5492 -2.0296 11 6 4.1312 0.4526 -1.9647 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6407 -0.7153 3.5644 16 6 2.9686 -2.0742 3.5034 17 6 3.4364 -2.7316 4.6270 18 6 3.5739 -2.0594 5.8215 19 6 3.2434 -0.6937 5.9035 20 6 3.3840 -0.0005 7.1284 21 1 3.3447 -0.5412 8.0625 22 6 3.5742 1.3858 7.1299 23 7 3.9594 1.9945 6.0379 24 14 3.2778 2.3675 8.6913 25 1 4.5372 2.4438 9.4747 26 1 2.8316 3.7388 8.3367 27 1 2.2291 1.7003 9.5039 28 6 2.7732 -0.0226 4.7621 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 3.8655 -2.4131 -0.2029 35 1 6.3189 -2.2489 -0.3141 36 1 8.0420 -0.7660 -2.2690 37 1 5.9677 1.3813 -2.5420 38 1 3.5149 1.2090 -2.4277 39 1 2.2491 -1.6318 1.1525 40 1 2.8599 -2.6117 2.5730 41 1 3.6909 -3.7795 4.5686 42 1 3.9359 -2.5805 6.6955 43 1 4.0908 2.9555 6.0388 44 1 2.5170 1.0252 4.8149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178911139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:22 Heat of formation + Delta-G solvation = -49.720422 kcal Electronic energy + Delta-G solvation = -26761.801968 eV Core-core repulsion = 23029.123025 eV Total energy + Delta-G solvation = -3732.678943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.01762 -39.17865 -37.45131 -36.85294 -35.28172 -33.72698 -31.89969 -31.03527 -30.40562 -29.48761 -29.23140 -26.13355 -25.29100 -23.18443 -22.88249 -21.71546 -21.02652 -20.46924 -19.52443 -18.49259 -17.72720 -16.33646 -16.09314 -15.87412 -15.44548 -15.33396 -15.04058 -14.65006 -14.34591 -13.90295 -13.75174 -13.53363 -13.45366 -13.06762 -12.80389 -12.67371 -12.49840 -12.45965 -12.19108 -11.91319 -11.68714 -11.61886 -11.22204 -11.10207 -11.03824 -10.87519 -10.72929 -10.51707 -10.46799 -9.99811 -9.67026 -9.18963 -9.03455 -8.96106 -8.65319 -8.46540 -7.59861 -7.49279 -6.77187 -4.39137 1.16501 1.31768 2.25185 2.83649 3.09360 3.12340 3.18064 3.55263 3.71429 3.90896 3.94905 4.12419 4.63908 4.68678 4.74093 4.92861 4.95136 5.16935 5.30075 5.38972 5.45464 5.61682 5.62220 5.64046 5.73917 5.78520 5.84998 5.94522 6.06442 6.19463 6.23003 6.28599 6.34430 6.37968 6.52774 6.74139 6.76340 6.94992 7.01800 7.05336 7.23694 7.40802 7.56906 7.72485 7.78768 7.95059 8.13649 8.22488 8.53151 8.82838 8.86101 9.01728 10.17566 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003430 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.149004 B = 8162.074784 C = 8719.080867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.087 0.913 4 C -0.087 4.087 5 C -0.087 4.087 6 C -0.092 4.092 7 C -0.138 4.138 8 C 0.098 3.902 9 O -0.499 6.499 10 C -0.144 4.144 11 C -0.101 4.101 12 N -0.729 5.729 13 C 0.566 3.434 14 O -0.546 6.546 15 C -0.127 4.127 16 C -0.217 4.217 17 C -0.098 4.098 18 C -0.212 4.212 19 C 0.100 3.900 20 C -0.461 4.461 21 H 0.081 0.919 22 C 0.074 3.926 23 N -0.783 5.783 24 Si 0.909 3.091 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.260 1.260 28 C -0.092 4.092 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.386 0.614 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.395 0.605 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.284 0.716 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -5.725 -17.047 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.125 4.125 5 C -0.087 4.087 6 C -0.110 4.110 7 C -0.157 4.157 8 C 0.053 3.947 9 O -0.308 6.308 10 C -0.162 4.162 11 C -0.119 4.119 12 N -0.383 5.383 13 C 0.357 3.643 14 O -0.424 6.424 15 C -0.130 4.130 16 C -0.237 4.237 17 C -0.116 4.116 18 C -0.232 4.232 19 C 0.097 3.903 20 C -0.490 4.490 21 H 0.099 0.901 22 C -0.145 4.145 23 N -0.408 5.408 24 Si 0.733 3.267 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.184 1.184 28 C -0.112 4.112 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.241 0.759 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.231 0.769 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.713 -4.299 -16.586 17.148 hybrid contribution 0.312 -0.233 0.223 0.449 sum -0.401 -4.532 -16.362 16.983 Atomic orbital electron populations 1.22191 0.95412 1.01985 1.02490 1.20818 0.93568 0.97690 0.83721 0.89529 1.20938 0.91244 1.01942 0.98364 1.19830 0.95561 0.95159 0.98119 1.20899 0.92970 0.98937 0.98202 1.21421 0.95335 0.98234 1.00687 1.18486 0.82776 0.94647 0.98741 1.84879 1.16854 1.79310 1.49773 1.21371 0.93973 0.99681 1.01207 1.20894 0.94135 0.97508 0.99348 1.45996 1.69094 1.13842 1.09382 1.18812 0.76081 0.86261 0.83185 1.90685 1.50503 1.16064 1.85197 1.19484 1.06043 0.94170 0.93314 1.20300 1.12389 0.93634 0.97376 1.20420 1.00177 0.97486 0.93533 1.21092 1.09321 0.96164 0.96659 1.17594 0.88556 0.91141 0.93005 1.19578 1.43824 0.91930 0.93675 0.90123 1.25957 0.92261 0.98452 0.97877 1.69789 1.30528 1.11735 1.28699 0.86303 0.79716 0.79003 0.81701 1.19437 1.19956 1.18380 1.21627 0.98342 1.00490 0.90763 0.91677 0.92062 0.92562 0.89537 0.90391 0.85788 0.85390 0.75919 0.85627 0.85700 0.76906 0.89447 0.88997 0.88678 0.90444 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 2 C 0.15 1.98 2.56 -67.93 -0.17 1.81 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.09 -0.86 4.89 -27.88 -0.14 -1.00 16 5 C -0.09 -1.01 4.95 -104.60 -0.52 -1.53 16 6 C -0.09 -1.11 9.09 -39.61 -0.36 -1.47 16 7 C -0.14 -1.75 9.99 -39.43 -0.39 -2.14 16 8 C 0.10 1.24 6.71 -39.22 -0.26 0.98 16 9 O -0.50 -5.78 13.50 -19.44 -0.26 -6.04 16 10 C -0.14 -1.72 9.99 -39.43 -0.39 -2.11 16 11 C -0.10 -1.16 9.69 -39.60 -0.38 -1.54 16 12 N -0.73 -11.86 4.48 -54.73 -0.25 -12.11 16 13 C 0.57 12.44 7.74 -12.31 -0.10 12.35 16 14 O -0.55 -13.82 16.00 5.32 0.09 -13.73 16 15 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16 16 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 17 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 18 C -0.21 -5.11 9.78 -38.81 -0.38 -5.49 16 19 C 0.10 2.67 5.57 -106.87 -0.59 2.08 16 20 C -0.46 -12.30 9.05 -37.73 -0.34 -12.64 16 21 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 22 C 0.07 1.89 5.14 -17.35 -0.09 1.81 16 23 N -0.78 -21.22 10.97 55.55 0.61 -20.62 16 24 Si 0.91 19.07 29.59 -169.99 -5.03 14.04 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 28 C -0.09 -2.50 8.23 -38.45 -0.32 -2.81 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.12 1.31 7.57 -52.48 -0.40 0.92 16 35 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.39 2.30 9.06 45.56 0.41 2.72 16 37 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.40 5.61 5.84 -40.82 -0.24 5.37 16 40 H 0.09 1.50 6.38 -52.49 -0.33 1.17 16 41 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 43 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 44 H 0.13 3.90 5.77 -52.49 -0.30 3.59 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -32.76 373.42 -9.71 -42.48 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -5.47 Total: -24.42 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.36 Total: -32.72 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.18 Total: -19.77 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.76 -9.71 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178911139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.243 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds