Wall clock time and date at job start Tue Mar 31 2020 16:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46639 * 2 1 4 4 C 1.53001 * 109.47054 * 240.00489 * 2 1 3 5 5 C 1.50699 * 109.47036 * 174.99969 * 4 2 1 6 6 C 1.38266 * 119.94582 * 89.99876 * 5 4 2 7 7 C 1.38143 * 120.05763 * 179.70231 * 6 5 4 8 8 C 1.38736 * 119.94035 * 0.27321 * 7 6 5 9 9 O 1.35906 * 120.05244 * 180.02562 * 8 7 6 10 10 C 1.38728 * 119.89024 * 359.97438 * 8 7 6 11 11 C 1.38148 * 119.94512 * 0.02562 * 10 8 7 12 12 N 1.46497 * 109.47247 * 120.00150 * 2 1 3 13 13 C 1.34781 * 119.99943 * 274.99895 * 12 2 1 14 14 O 1.21547 * 119.99604 * 0.02562 * 13 12 2 15 15 C 1.47885 * 119.99679 * 180.02562 * 13 12 2 16 16 C 1.39916 * 120.02559 * 359.72409 * 15 13 12 17 17 C 1.38333 * 120.35710 * 179.71572 * 16 15 13 18 18 C 1.37754 * 120.40829 * 0.56373 * 17 16 15 19 19 C 1.40751 * 120.03997 * 359.71791 * 18 17 16 20 20 C 1.41442 * 120.17407 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00307 * 334.93442 * 20 19 18 22 22 C 1.39936 * 119.99426 * 154.92846 * 20 19 18 23 23 N 1.30824 * 120.00658 * 342.58941 * 22 20 19 24 24 Si 1.86802 * 119.99780 * 162.58729 * 22 20 19 25 25 H 1.48505 * 109.47315 * 89.99892 * 24 22 20 26 26 H 1.48498 * 109.47282 * 210.00119 * 24 22 20 27 27 H 1.48503 * 109.47038 * 330.00313 * 24 22 20 28 28 C 1.38995 * 120.02171 * 180.02562 * 15 13 12 29 29 H 1.08994 * 109.47000 * 300.00072 * 1 2 3 30 30 H 1.09003 * 109.47070 * 60.00068 * 1 2 3 31 31 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47255 * 54.99338 * 4 2 1 33 33 H 1.09004 * 109.46706 * 294.99670 * 4 2 1 34 34 H 1.08006 * 119.96899 * 359.97438 * 6 5 4 35 35 H 1.07995 * 120.02540 * 180.29681 * 7 6 5 36 36 H 0.96698 * 113.99873 * 90.00062 * 9 8 7 37 37 H 1.08003 * 120.02762 * 179.97438 * 10 8 7 38 38 H 1.07996 * 119.97318 * 180.02562 * 11 10 8 39 39 H 0.96998 * 119.99946 * 94.99895 * 12 2 1 40 40 H 1.07995 * 119.82559 * 359.97438 * 16 15 13 41 41 H 1.07994 * 119.79673 * 180.26389 * 17 16 15 42 42 H 1.08008 * 119.97835 * 179.74273 * 18 17 16 43 43 H 0.96994 * 120.00442 * 179.97438 * 23 22 20 44 44 H 1.07997 * 120.20223 * 359.97383 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 6 4.3282 -1.5823 -0.7150 7 6 5.7052 -1.4904 -0.7771 8 6 6.2990 -0.4230 -1.4350 9 8 7.6534 -0.3306 -1.4979 10 6 5.5078 0.5492 -2.0296 11 6 4.1312 0.4526 -1.9647 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6407 -0.7153 3.5644 16 6 2.9686 -2.0742 3.5034 17 6 3.4364 -2.7316 4.6270 18 6 3.5739 -2.0594 5.8215 19 6 3.2434 -0.6937 5.9035 20 6 3.3840 -0.0005 7.1284 21 1 3.3447 -0.5412 8.0625 22 6 3.5742 1.3858 7.1299 23 7 3.9594 1.9945 6.0379 24 14 3.2778 2.3675 8.6913 25 1 4.5372 2.4438 9.4747 26 1 2.8316 3.7388 8.3367 27 1 2.2291 1.7003 9.5039 28 6 2.7732 -0.0226 4.7621 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 3.8655 -2.4131 -0.2029 35 1 6.3189 -2.2489 -0.3141 36 1 8.0420 -0.7660 -2.2690 37 1 5.9677 1.3813 -2.5420 38 1 3.5149 1.2090 -2.4277 39 1 2.2491 -1.6318 1.1525 40 1 2.8599 -2.6117 2.5730 41 1 3.6909 -3.7795 4.5686 42 1 3.9359 -2.5805 6.6955 43 1 4.0908 2.9555 6.0388 44 1 2.5170 1.0252 4.8149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178911139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:21 Heat of formation + Delta-G solvation = -70.581180 kcal Electronic energy + Delta-G solvation = -26762.706558 eV Core-core repulsion = 23029.123025 eV Total energy + Delta-G solvation = -3733.583533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.17764 -40.51921 -38.95996 -38.12317 -36.53830 -35.60747 -33.29046 -31.91977 -31.79471 -31.28372 -30.63443 -27.22282 -27.00292 -24.75597 -23.78401 -22.90297 -22.70529 -21.66948 -21.18342 -19.51983 -19.36039 -17.93641 -17.40649 -16.95803 -16.77237 -16.51174 -16.38034 -16.22540 -15.83662 -15.36205 -15.10619 -14.91208 -14.47432 -14.37748 -14.32640 -14.25132 -13.83831 -13.47730 -13.34243 -13.15743 -12.98915 -12.83923 -12.78241 -12.54027 -12.49242 -12.22983 -12.11520 -11.91369 -11.83429 -11.50618 -11.37476 -11.07294 -10.72512 -10.11765 -9.90165 -9.46230 -9.38488 -9.36802 -8.66828 -6.38966 0.27844 0.40275 0.42877 1.01240 1.34682 1.45411 1.51355 2.13390 2.19116 2.31690 2.68623 2.79936 3.31470 3.70336 3.77654 3.90528 3.95409 4.07971 4.14311 4.29841 4.41271 4.44252 4.46980 4.53695 4.59046 4.78394 4.79298 4.88821 4.91286 5.00361 5.08418 5.09433 5.15257 5.20825 5.30491 5.31637 5.39469 5.48527 5.51983 5.56595 5.71490 5.87427 5.93076 5.95211 6.05423 6.29406 6.53192 6.73312 6.86499 6.87714 6.95166 7.38895 8.29983 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003430 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.149004 B = 8162.074784 C = 8719.080867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.057 0.943 4 C -0.074 4.074 5 C -0.098 4.098 6 C -0.102 4.102 7 C -0.158 4.158 8 C 0.084 3.916 9 O -0.514 6.514 10 C -0.159 4.159 11 C -0.108 4.108 12 N -0.704 5.704 13 C 0.561 3.439 14 O -0.592 6.592 15 C -0.139 4.139 16 C -0.194 4.194 17 C -0.096 4.096 18 C -0.218 4.218 19 C 0.068 3.932 20 C -0.500 4.500 21 H 0.084 0.916 22 C 0.029 3.971 23 N -0.828 5.828 24 Si 0.982 3.018 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.253 1.253 28 C -0.133 4.133 29 H 0.027 0.973 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.408 0.592 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.409 0.591 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.107 0.893 43 H 0.285 0.715 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -8.201 -18.851 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.098 4.098 6 C -0.119 4.119 7 C -0.177 4.177 8 C 0.040 3.960 9 O -0.327 6.327 10 C -0.177 4.177 11 C -0.126 4.126 12 N -0.357 5.357 13 C 0.351 3.649 14 O -0.473 6.473 15 C -0.142 4.142 16 C -0.214 4.214 17 C -0.113 4.113 18 C -0.238 4.238 19 C 0.065 3.935 20 C -0.529 4.529 21 H 0.102 0.898 22 C -0.185 4.185 23 N -0.454 5.454 24 Si 0.802 3.198 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.177 1.177 28 C -0.153 4.153 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.266 0.734 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.247 0.753 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.331 -6.843 -18.443 19.717 hybrid contribution 0.545 0.373 0.577 0.877 sum -0.786 -6.470 -17.867 19.018 Atomic orbital electron populations 1.22142 0.93977 1.03232 1.02153 1.21051 0.94647 0.96541 0.83884 0.92495 1.20929 0.89892 1.03266 0.97088 1.20090 0.96626 0.95062 0.98041 1.21191 0.92877 0.99632 0.98248 1.21633 0.96053 0.98678 1.01294 1.18714 0.83244 0.95023 0.99007 1.84809 1.16629 1.79883 1.51419 1.21613 0.94497 1.00015 1.01593 1.21230 0.94256 0.97949 0.99166 1.45820 1.67140 1.14218 1.08506 1.18688 0.76130 0.85769 0.84323 1.90661 1.52642 1.18028 1.86003 1.19840 1.05590 0.95635 0.93158 1.20833 1.08951 0.92264 0.99348 1.20927 0.98565 0.99602 0.92252 1.21412 1.08665 0.95210 0.98517 1.17940 0.89516 0.92770 0.93242 1.19869 1.45969 0.93097 0.94007 0.89794 1.26861 0.91282 0.99214 1.01157 1.69901 1.32491 1.11903 1.31131 0.85214 0.80031 0.77132 0.77435 1.18120 1.19780 1.17684 1.21428 1.01561 0.99468 0.92865 0.95375 0.89114 0.90444 0.86622 0.87764 0.84047 0.84884 0.73366 0.84584 0.83863 0.75289 0.84501 0.84284 0.87441 0.90426 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.48 71.98 0.68 -2.73 16 2 C 0.14 3.53 2.56 44.99 0.12 3.65 16 3 H 0.06 1.79 7.58 -2.39 -0.02 1.77 16 4 C -0.07 -1.17 4.89 29.85 0.15 -1.02 16 5 C -0.10 -2.02 4.95 -19.85 -0.10 -2.12 16 6 C -0.10 -2.20 9.09 22.25 0.20 -1.99 16 7 C -0.16 -3.78 9.99 22.37 0.22 -3.56 16 8 C 0.08 2.08 6.71 22.51 0.15 2.23 16 9 O -0.51 -11.61 13.50 -92.49 -1.25 -12.85 16 10 C -0.16 -3.64 9.99 22.37 0.22 -3.42 16 11 C -0.11 -2.29 9.69 22.25 0.22 -2.08 16 12 N -0.70 -21.49 4.48 -445.36 -1.99 -23.48 16 13 C 0.56 24.90 7.74 86.80 0.67 25.57 16 14 O -0.59 -31.41 16.00 -3.86 -0.06 -31.48 16 15 C -0.14 -6.68 5.87 -20.13 -0.12 -6.79 16 16 C -0.19 -7.61 9.55 22.70 0.22 -7.39 16 17 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 18 C -0.22 -10.36 9.78 22.77 0.22 -10.14 16 19 C 0.07 3.75 5.57 -21.32 -0.12 3.64 16 20 C -0.50 -27.92 9.05 23.47 0.21 -27.71 16 21 H 0.08 4.41 7.90 -2.91 -0.02 4.38 16 22 C 0.03 1.58 5.14 85.25 0.44 2.02 16 23 N -0.83 -47.89 10.97 21.82 0.24 -47.65 16 24 Si 0.98 40.71 29.59 68.60 2.03 42.74 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 28 C -0.13 -7.56 8.23 23.01 0.19 -7.37 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.12 1.24 8.09 -2.39 -0.02 1.22 16 33 H 0.10 1.16 8.08 -2.38 -0.02 1.14 16 34 H 0.14 2.42 7.57 -2.91 -0.02 2.40 16 35 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.41 4.52 9.06 -74.06 -0.67 3.84 16 37 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.41 9.97 5.84 -92.71 -0.54 9.43 16 40 H 0.14 3.94 6.38 -2.91 -0.02 3.93 16 41 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.29 15.25 8.30 -92.71 -0.77 14.48 16 44 H 0.10 6.08 5.77 -2.91 -0.02 6.06 16 Total: -1.00 -78.15 373.42 2.59 -75.56 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.17 Total: 39.94 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 3.80 Total: -42.79 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.75 Total: -71.13 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.31 Total: -44.33 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -78.15 2.59 -75.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178911139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.982 kcal (2) G-P(sol) polarization free energy of solvation -78.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds